Wall clock time and date at job start Tue Mar 31 2020 05:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86793 * 120.00147 * 2 1 4 4 H 1.48502 * 109.47502 * 270.00339 * 3 2 1 5 5 H 1.48499 * 109.47166 * 30.00577 * 3 2 1 6 6 H 1.48503 * 109.47305 * 150.00054 * 3 2 1 7 7 C 1.37881 * 119.99747 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99649 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99746 * 179.97438 * 7 2 1 10 10 C 1.53004 * 109.46806 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.46743 * 179.97438 * 10 9 7 12 12 N 1.46502 * 109.47061 * 179.97438 * 11 10 9 13 13 C 1.34782 * 120.00093 * 180.02562 * 12 11 10 14 14 O 1.21582 * 120.00050 * 5.09496 * 13 12 11 15 15 N 1.34775 * 119.99699 * 185.09133 * 13 12 11 16 16 C 1.47169 * 120.94339 * 5.49142 * 15 13 12 17 17 C 1.53301 * 108.37386 * 230.49511 * 16 15 13 18 18 O 1.42954 * 109.26690 * 307.77774 * 17 16 15 19 19 C 1.42965 * 114.17043 * 62.55262 * 18 17 16 20 20 C 1.47158 * 120.97879 * 185.53656 * 15 13 12 21 21 H 1.08993 * 109.70741 * 249.19318 * 20 15 13 22 22 C 1.52996 * 109.67977 * 9.72849 * 20 15 13 23 23 C 1.52994 * 117.50001 * 253.64668 * 22 20 15 24 24 C 1.52998 * 60.00517 * 252.51510 * 23 22 20 25 25 H 0.97000 * 119.99699 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.47308 * 59.99624 * 9 7 2 27 27 H 1.08998 * 109.46568 * 299.99339 * 9 7 2 28 28 H 1.08997 * 109.47296 * 59.99859 * 10 9 7 29 29 H 1.08996 * 109.46789 * 299.99487 * 10 9 7 30 30 H 1.09013 * 109.47339 * 60.00388 * 11 10 9 31 31 H 1.09000 * 109.47617 * 299.99939 * 11 10 9 32 32 H 0.97002 * 119.99803 * 359.97438 * 12 11 10 33 33 H 1.08997 * 109.64697 * 110.80724 * 16 15 13 34 34 H 1.08991 * 109.73098 * 350.24150 * 16 15 13 35 35 H 1.08998 * 109.51023 * 187.82222 * 17 16 15 36 36 H 1.09006 * 109.50830 * 67.72284 * 17 16 15 37 37 H 1.09003 * 109.50905 * 57.34307 * 19 18 17 38 38 H 1.09001 * 109.51599 * 177.44545 * 19 18 17 39 39 H 1.09003 * 115.55181 * 39.36322 * 22 20 15 40 40 H 1.09007 * 117.49929 * 0.02562 * 23 22 20 41 41 H 1.09006 * 117.50093 * 145.02431 * 23 22 20 42 42 H 1.08999 * 117.49613 * 252.51384 * 24 23 22 43 43 H 1.09003 * 117.49724 * 107.48506 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6526 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0214 -2.6367 -0.0010 11 6 5.5514 -2.6367 -0.0022 12 7 6.0397 -4.0179 -0.0015 13 6 7.3649 -4.2642 -0.0018 14 8 8.1542 -3.3441 0.0907 15 7 7.8148 -5.5304 -0.1047 16 6 6.8852 -6.6473 -0.3379 17 6 7.1718 -7.7391 0.6994 18 8 8.5654 -8.0566 0.6773 19 6 9.4197 -6.9674 1.0345 20 6 9.2493 -5.8365 0.0136 21 1 9.6386 -6.1535 -0.9538 22 6 10.0037 -4.5938 0.4905 23 6 10.8602 -3.8501 -0.5362 24 6 11.5297 -4.6780 0.5625 25 1 -0.4850 0.8401 0.0004 26 1 3.8752 -0.6804 0.8888 27 1 3.8744 -0.6802 -0.8912 28 1 3.6577 -3.1507 -0.8907 29 1 3.6585 -3.1502 0.8893 30 1 5.9155 -2.1225 0.8874 31 1 5.9141 -2.1232 -0.8927 32 1 5.4094 -4.7552 0.0000 33 1 7.0354 -7.0458 -1.3412 34 1 5.8579 -6.2995 -0.2305 35 1 6.5914 -8.6301 0.4599 36 1 6.8958 -7.3805 1.6911 37 1 9.1520 -6.6052 2.0271 38 1 10.4566 -7.3034 1.0369 39 1 9.4962 -3.9980 1.2492 40 1 10.8860 -4.2459 -1.5515 41 1 10.9163 -2.7646 -0.4532 42 1 12.0261 -4.1373 1.3683 43 1 11.9962 -5.6188 0.2701 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089896443.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:14 Heat of formation + Delta-G solvation = -34.890734 kcal Electronic energy + Delta-G solvation = -22617.009813 eV Core-core repulsion = 19277.829627 eV Total energy + Delta-G solvation = -3339.180185 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.92144 -38.66231 -37.29606 -35.45156 -34.83037 -33.24715 -31.60489 -31.12566 -28.27841 -26.80670 -24.92142 -23.20516 -22.43350 -22.03625 -21.11480 -20.59914 -19.63876 -18.00472 -16.92988 -16.68843 -16.36662 -15.93029 -15.61548 -15.35266 -15.09815 -14.65569 -14.36152 -14.22777 -13.91726 -13.52602 -13.27145 -12.72988 -12.63395 -12.05349 -12.02044 -11.81307 -11.66606 -11.50481 -11.25527 -11.03442 -10.90869 -10.69604 -10.48757 -10.29576 -10.09687 -9.89274 -9.73843 -9.24714 -9.13800 -8.90784 -8.57181 -8.53057 -6.07932 -4.06695 2.43915 3.21900 3.30272 3.37900 3.42204 3.42223 3.74314 3.89131 4.33941 4.43142 4.57621 4.64561 4.67846 4.81727 4.88323 4.98131 5.14129 5.19787 5.26298 5.29816 5.36596 5.43682 5.51968 5.55112 5.61338 5.66970 5.89449 6.01043 6.10000 6.14794 6.30451 6.44193 6.46946 6.66134 6.71786 6.80355 6.87847 7.21258 7.34784 7.73947 7.96321 8.48376 8.64103 8.95762 9.54376 11.05331 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.025119 B = 0.003371 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.444084 B = 8302.954434 C = 9252.338857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.067 3.933 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.522 4.522 8 H 0.072 0.928 9 C -0.010 4.010 10 C -0.113 4.113 11 C 0.133 3.867 12 N -0.743 5.743 13 C 0.705 3.295 14 O -0.572 6.572 15 N -0.634 5.634 16 C 0.077 3.923 17 C 0.046 3.954 18 O -0.380 6.380 19 C 0.054 3.946 20 C 0.164 3.836 21 H 0.075 0.925 22 C -0.126 4.126 23 C -0.155 4.155 24 C -0.198 4.198 25 H 0.263 0.737 26 H 0.019 0.981 27 H 0.014 0.986 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.392 0.608 33 H 0.078 0.922 34 H 0.091 0.909 35 H 0.107 0.893 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.106 0.894 39 H 0.127 0.873 40 H 0.085 0.915 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.904 -16.152 0.887 25.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.560 4.560 8 H 0.090 0.910 9 C -0.048 4.048 10 C -0.151 4.151 11 C 0.010 3.990 12 N -0.400 5.400 13 C 0.407 3.593 14 O -0.450 6.450 15 N -0.374 5.374 16 C -0.047 4.047 17 C -0.032 4.032 18 O -0.298 6.298 19 C -0.024 4.024 20 C 0.060 3.940 21 H 0.093 0.907 22 C -0.145 4.145 23 C -0.192 4.192 24 C -0.236 4.236 25 H 0.073 0.927 26 H 0.037 0.963 27 H 0.033 0.967 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.228 0.772 33 H 0.096 0.904 34 H 0.109 0.891 35 H 0.125 0.875 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.124 0.876 39 H 0.145 0.855 40 H 0.103 0.897 41 H 0.111 0.889 42 H 0.111 0.889 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 20.370 -15.491 0.887 25.607 hybrid contribution -0.248 0.817 -0.080 0.858 sum 20.123 -14.674 0.808 24.918 Atomic orbital electron populations 1.69912 1.06327 1.26975 1.50997 1.25028 0.94749 0.99250 0.94449 0.86774 0.80406 0.83506 0.78603 1.20234 1.21360 1.18886 1.21096 0.89312 0.94497 1.51122 0.91033 1.19494 0.97241 0.91421 0.96678 1.21704 0.90731 1.01041 1.01610 1.21511 0.95668 0.80060 1.01784 1.45597 1.04909 1.10038 1.79436 1.15910 0.82992 0.82424 0.77998 1.90923 1.53835 1.42963 1.57268 1.47341 1.07002 1.05348 1.77714 1.22347 0.94132 0.87972 1.00249 1.23005 0.83026 0.98706 0.98436 1.87963 1.16198 1.35579 1.90030 1.23038 0.95387 0.86850 0.97092 1.21268 0.79520 0.94352 0.98876 0.90719 1.22316 0.90555 0.97321 1.04276 1.22751 1.03158 0.98998 0.94270 1.23149 0.95706 1.02196 1.02507 0.92684 0.96290 0.96730 0.92226 0.92188 0.91922 0.92042 0.77216 0.90416 0.89132 0.87469 0.92384 0.92321 0.87631 0.85484 0.89653 0.88893 0.88899 0.89320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.67 13.96 55.43 0.77 -26.89 16 2 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 21.68 27.47 -169.99 -4.67 17.01 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.26 -6.28 6.54 56.52 0.37 -5.91 16 7 C -0.52 -14.63 9.66 -34.44 -0.33 -14.96 16 8 H 0.07 2.13 7.99 -52.48 -0.42 1.72 16 9 C -0.01 -0.24 4.04 -27.88 -0.11 -0.35 16 10 C -0.11 -2.08 5.27 -26.73 -0.14 -2.22 16 11 C 0.13 2.19 5.68 -4.04 -0.02 2.17 16 12 N -0.74 -10.26 5.45 -65.22 -0.36 -10.62 16 13 C 0.70 10.23 8.11 -86.91 -0.70 9.52 16 14 O -0.57 -9.91 12.13 5.29 0.06 -9.85 16 15 N -0.63 -7.23 3.02 -170.42 -0.51 -7.74 16 16 C 0.08 0.64 6.65 -3.52 -0.02 0.62 16 17 C 0.05 0.35 6.98 37.31 0.26 0.61 16 18 O -0.38 -3.60 10.74 -35.23 -0.38 -3.98 16 19 C 0.05 0.47 6.11 37.31 0.23 0.70 16 20 C 0.16 1.71 3.25 -67.42 -0.22 1.49 16 21 H 0.07 0.77 7.96 -51.93 -0.41 0.36 16 22 C -0.13 -1.45 3.22 -90.62 -0.29 -1.74 16 23 C -0.15 -1.75 9.59 -26.74 -0.26 -2.01 16 24 C -0.20 -1.81 10.01 -26.73 -0.27 -2.07 16 25 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 26 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 27 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 28 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.06 1.09 8.14 -51.92 -0.42 0.66 16 31 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.39 4.44 6.01 -40.82 -0.25 4.19 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.09 0.65 5.65 -51.93 -0.29 0.36 16 35 H 0.11 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.11 0.74 8.10 -51.93 -0.42 0.32 16 39 H 0.13 1.81 6.29 -51.93 -0.33 1.49 16 40 H 0.08 0.92 8.09 -51.93 -0.42 0.50 16 41 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 340.30 15.07 5.13 5.13 Total: -1.00 -32.56 340.30 -9.06 -41.61 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -7.12 Total: 1.76 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: -1.98 Total: -6.42 kcal Atomic # 7 Polarization: -45.16 SS G_CDS: -0.10 Total: -45.25 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: -0.31 Total: -13.83 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.67 Total: 17.01 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.56 -9.06 -41.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089896443.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.722 kcal (2) G-P(sol) polarization free energy of solvation -32.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds