Wall clock time and date at job start Tue Mar 31 2020 05:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.47239 * 2 1 4 4 N 1.46497 * 109.47194 * 179.97438 * 3 2 1 5 5 C 1.36936 * 119.99592 * 93.45883 * 4 3 2 6 6 H 1.08004 * 119.99723 * 214.53953 * 5 4 3 7 7 C 1.38809 * 120.00441 * 34.26398 * 5 4 3 8 8 N 1.31616 * 119.99773 * 22.10783 * 7 5 4 9 9 Si 1.86801 * 120.00268 * 202.11365 * 7 5 4 10 10 H 1.48504 * 109.46863 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47241 * 119.99615 * 9 7 5 12 12 H 1.48504 * 109.47145 * 240.00169 * 9 7 5 13 13 C 1.46495 * 120.00398 * 273.45715 * 4 3 2 14 14 C 1.50700 * 109.47223 * 270.00307 * 13 4 3 15 15 C 1.33638 * 126.03885 * 90.01983 * 14 13 4 16 16 N 1.31784 * 114.49716 * 180.02562 * 15 14 13 17 17 C 1.29024 * 117.12661 * 359.97438 * 16 15 14 18 18 C 1.50698 * 124.91753 * 180.02562 * 17 16 15 19 19 C 1.53001 * 109.47035 * 60.02376 * 18 17 16 20 20 C 1.52994 * 109.47525 * 180.02562 * 18 17 16 21 21 C 1.53003 * 109.46982 * 300.03127 * 18 17 16 22 22 S 1.70976 * 110.16791 * 359.73066 * 17 16 15 23 23 H 1.08994 * 109.47102 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46782 * 299.99988 * 1 2 3 25 25 H 1.09001 * 109.47036 * 59.99654 * 1 2 3 26 26 H 1.09000 * 109.46782 * 240.00012 * 2 1 3 27 27 H 1.08996 * 109.47222 * 119.99911 * 2 1 3 28 28 H 1.09000 * 109.47104 * 59.99740 * 3 2 1 29 29 H 1.08996 * 109.46941 * 300.00083 * 3 2 1 30 30 H 0.97002 * 119.99806 * 179.97438 * 8 7 5 31 31 H 1.09004 * 109.47127 * 29.99633 * 13 4 3 32 32 H 1.08994 * 109.47481 * 149.99492 * 13 4 3 33 33 H 1.08002 * 122.75106 * 0.02562 * 15 14 13 34 34 H 1.09001 * 109.47143 * 60.00494 * 19 18 17 35 35 H 1.09007 * 109.46935 * 179.97438 * 19 18 17 36 36 H 1.09000 * 109.47650 * 300.00147 * 19 18 17 37 37 H 1.09003 * 109.47110 * 59.99701 * 20 18 17 38 38 H 1.08998 * 109.47649 * 180.02562 * 20 18 17 39 39 H 1.09009 * 109.47042 * 300.00288 * 20 18 17 40 40 H 1.08992 * 109.47519 * 59.99695 * 21 18 17 41 41 H 1.09007 * 109.46995 * 180.02562 * 21 18 17 42 42 H 1.09003 * 109.46777 * 299.99762 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.1902 1.5139 -1.1829 6 1 5.1275 0.9895 -1.2967 7 6 3.6773 2.2555 -2.2382 8 7 2.8078 3.2160 -2.0062 9 14 4.2209 1.8903 -3.9877 10 1 5.1981 0.7721 -3.9791 11 1 3.0400 1.5101 -4.8038 12 1 4.8573 3.0988 -4.5707 13 6 4.2371 1.3662 1.2673 14 6 4.4880 2.7583 1.7871 15 6 3.6831 3.4518 2.5976 16 7 4.1262 4.6527 2.9110 17 6 5.2603 5.0105 2.4104 18 6 5.9291 6.3392 2.6520 19 6 6.1952 6.5115 4.1488 20 6 7.2545 6.3892 1.8893 21 6 5.0165 7.4658 2.1633 22 16 5.8983 3.7559 1.4399 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6767 1.9564 0.8900 29 1 1.6768 1.9563 -0.8900 30 1 2.4496 3.7345 -2.7437 31 1 3.6477 0.8076 1.9945 32 1 5.1895 0.8611 1.1067 33 1 2.7462 3.0603 2.9657 34 1 6.8453 5.7089 4.4971 35 1 6.6794 7.4724 4.3235 36 1 5.2510 6.4759 4.6922 37 1 7.0649 6.2664 0.8230 38 1 7.7384 7.3500 2.0644 39 1 7.9046 5.5865 2.2376 40 1 4.0724 7.4302 2.7067 41 1 5.5005 8.4269 2.3376 42 1 4.8269 7.3430 1.0969 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092398404.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:39 Heat of formation + Delta-G solvation = 37.141675 kcal Electronic energy + Delta-G solvation = -20584.392803 eV Core-core repulsion = 17691.089048 eV Total energy + Delta-G solvation = -2893.303755 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.13007 -36.71501 -35.87333 -32.56024 -31.82419 -29.19589 -27.27137 -27.08516 -26.02457 -25.57891 -23.74758 -21.83804 -20.46100 -20.05367 -18.06121 -16.99677 -16.69883 -15.15675 -14.81110 -14.44485 -14.16191 -13.89672 -13.84034 -13.68850 -13.36293 -12.97009 -12.80250 -12.42955 -12.04804 -11.97448 -11.80182 -11.53140 -11.38919 -11.09892 -11.02221 -10.98132 -10.85231 -10.80098 -10.77653 -10.43351 -10.29121 -10.01773 -9.94542 -9.56764 -8.84052 -8.58891 -8.34435 -7.94675 -6.74985 -5.89722 -3.41703 1.57003 2.22493 2.68748 3.29590 3.38608 3.40607 3.64753 4.40187 4.54293 5.01323 5.10075 5.22225 5.33072 5.43765 5.66447 5.75445 5.78509 5.81965 5.87224 5.87759 5.99054 6.01962 6.03859 6.06606 6.15018 6.17993 6.25109 6.40707 6.43458 6.49347 6.50495 6.57961 6.70759 6.83530 6.86649 7.02500 7.22100 7.67583 7.74177 8.38208 8.54270 9.05706 9.67400 10.23852 11.09198 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.017124 B = 0.005811 C = 0.004905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.719195 B = 4817.551688 C = 5707.177692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.139 4.139 3 C 0.144 3.856 4 N -0.566 5.566 5 C -0.257 4.257 6 H 0.065 0.935 7 C 0.015 3.985 8 N -0.875 5.875 9 Si 0.897 3.103 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.289 1.289 13 C 0.206 3.794 14 C -0.185 4.185 15 C 0.000 4.000 16 N -0.468 5.468 17 C 0.014 3.986 18 C 0.018 3.982 19 C -0.130 4.130 20 C -0.151 4.151 21 C -0.132 4.132 22 S 0.118 5.882 23 H 0.040 0.960 24 H 0.045 0.955 25 H 0.050 0.950 26 H 0.057 0.943 27 H 0.041 0.959 28 H 0.021 0.979 29 H 0.100 0.900 30 H 0.256 0.744 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.158 0.842 34 H 0.053 0.947 35 H 0.057 0.943 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.060 0.940 40 H 0.063 0.937 41 H 0.056 0.944 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.476 2.672 8.184 9.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.179 4.179 3 C 0.018 3.982 4 N -0.284 5.284 5 C -0.388 4.388 6 H 0.083 0.917 7 C -0.187 4.187 8 N -0.516 5.516 9 Si 0.726 3.274 10 H -0.199 1.199 11 H -0.213 1.213 12 H -0.215 1.215 13 C 0.077 3.923 14 C -0.310 4.310 15 C -0.151 4.151 16 N -0.182 5.182 17 C -0.264 4.264 18 C 0.014 3.986 19 C -0.188 4.188 20 C -0.209 4.209 21 C -0.191 4.191 22 S 0.373 5.627 23 H 0.059 0.941 24 H 0.064 0.936 25 H 0.069 0.931 26 H 0.076 0.924 27 H 0.060 0.940 28 H 0.040 0.960 29 H 0.117 0.883 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.175 0.825 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.075 0.925 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.997 2.993 7.803 9.737 hybrid contribution -0.844 -0.309 -0.772 1.185 sum 4.153 2.683 7.031 8.595 Atomic orbital electron populations 1.21689 0.97414 0.99997 1.01165 1.22062 0.93780 1.01327 1.00691 1.21061 0.82729 0.92381 1.02047 1.44238 1.01336 1.82785 1.00028 1.19164 1.06771 1.24235 0.88582 0.91694 1.25179 0.99420 0.94787 0.99334 1.70014 1.32327 1.18508 1.30756 0.86320 0.78256 0.78004 0.84827 1.19901 1.21288 1.21529 1.19675 0.96655 0.87055 0.88916 1.27577 0.96861 1.05894 1.00679 1.21269 1.01704 0.89976 1.02136 1.65965 1.11814 1.16115 1.24319 1.26568 0.96915 1.01363 1.01534 1.19011 0.94145 0.88909 0.96509 1.21796 1.02092 1.01067 0.93890 1.21986 0.95843 1.02278 1.00802 1.21810 0.99459 0.96118 1.01703 1.83734 1.22842 1.08655 1.47440 0.94065 0.93591 0.93092 0.92408 0.94037 0.96019 0.88277 0.93414 0.92244 0.92605 0.82502 0.92822 0.92393 0.91795 0.91739 0.91492 0.92072 0.91808 0.92454 0.92464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.91 37.16 0.37 -2.01 16 2 C -0.14 -2.68 6.26 -26.73 -0.17 -2.85 16 3 C 0.14 3.27 5.26 -4.04 -0.02 3.25 16 4 N -0.57 -13.44 2.43 -174.61 -0.42 -13.86 16 5 C -0.26 -6.68 9.49 -15.06 -0.14 -6.83 16 6 H 0.07 1.69 7.92 -52.48 -0.42 1.28 16 7 C 0.01 0.39 4.94 -17.43 -0.09 0.30 16 8 N -0.88 -24.51 11.33 55.49 0.63 -23.88 16 9 Si 0.90 20.99 29.61 -169.99 -5.03 15.96 16 10 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 13 C 0.21 4.24 6.21 -5.20 -0.03 4.21 16 14 C -0.18 -3.83 6.18 -35.92 -0.22 -4.05 16 15 C 0.00 0.00 11.25 -19.18 -0.22 -0.22 16 16 N -0.47 -9.41 10.53 -11.86 -0.12 -9.53 16 17 C 0.01 0.26 5.78 -13.46 -0.08 0.18 16 18 C 0.02 0.26 0.99 -155.66 -0.15 0.11 16 19 C -0.13 -1.63 8.45 37.16 0.31 -1.31 16 20 C -0.15 -1.91 7.54 37.15 0.28 -1.63 16 21 C -0.13 -1.88 8.45 37.16 0.31 -1.56 16 22 S 0.12 2.27 21.57 -107.50 -2.32 -0.05 16 23 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.02 0.48 8.10 -51.93 -0.42 0.06 16 29 H 0.10 2.59 5.33 -51.93 -0.28 2.31 16 30 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 31 H 0.06 1.10 8.07 -51.93 -0.42 0.68 16 32 H 0.06 1.11 8.04 -51.93 -0.42 0.70 16 33 H 0.16 2.98 8.06 -52.49 -0.42 2.56 16 34 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.06 0.89 7.93 -51.93 -0.41 0.48 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.74 7.92 -51.92 -0.41 0.33 16 40 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 354.87 15.07 5.35 5.35 Total: -1.00 -28.58 354.87 -9.17 -37.75 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -7.40 Total: 0.68 kcal Atomic # 6 Polarization: -12.58 SS G_CDS: 0.16 Total: -12.42 kcal Atomic # 7 Polarization: -47.35 SS G_CDS: 0.08 Total: -47.27 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.03 Total: 15.96 kcal Atomic # 16 Polarization: 2.27 SS G_CDS: -2.32 Total: -0.05 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -28.58 -9.17 -37.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092398404.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.893 kcal (2) G-P(sol) polarization free energy of solvation -28.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds