Wall clock time and date at job start Tue Mar 31 2020 05:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.47239 * 2 1 4 4 N 1.46497 * 109.47194 * 179.97438 * 3 2 1 5 5 C 1.36936 * 119.99592 * 93.45883 * 4 3 2 6 6 H 1.08004 * 119.99723 * 214.53953 * 5 4 3 7 7 C 1.38809 * 120.00441 * 34.26398 * 5 4 3 8 8 N 1.31616 * 119.99773 * 22.10783 * 7 5 4 9 9 Si 1.86801 * 120.00268 * 202.11365 * 7 5 4 10 10 H 1.48504 * 109.46863 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47241 * 119.99615 * 9 7 5 12 12 H 1.48504 * 109.47145 * 240.00169 * 9 7 5 13 13 C 1.46495 * 120.00398 * 273.45715 * 4 3 2 14 14 C 1.50700 * 109.47223 * 270.00307 * 13 4 3 15 15 C 1.33638 * 126.03885 * 90.01983 * 14 13 4 16 16 N 1.31784 * 114.49716 * 180.02562 * 15 14 13 17 17 C 1.29024 * 117.12661 * 359.97438 * 16 15 14 18 18 C 1.50698 * 124.91753 * 180.02562 * 17 16 15 19 19 C 1.53001 * 109.47035 * 60.02376 * 18 17 16 20 20 C 1.52994 * 109.47525 * 180.02562 * 18 17 16 21 21 C 1.53003 * 109.46982 * 300.03127 * 18 17 16 22 22 S 1.70976 * 110.16791 * 359.73066 * 17 16 15 23 23 H 1.08994 * 109.47102 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46782 * 299.99988 * 1 2 3 25 25 H 1.09001 * 109.47036 * 59.99654 * 1 2 3 26 26 H 1.09000 * 109.46782 * 240.00012 * 2 1 3 27 27 H 1.08996 * 109.47222 * 119.99911 * 2 1 3 28 28 H 1.09000 * 109.47104 * 59.99740 * 3 2 1 29 29 H 1.08996 * 109.46941 * 300.00083 * 3 2 1 30 30 H 0.97002 * 119.99806 * 179.97438 * 8 7 5 31 31 H 1.09004 * 109.47127 * 29.99633 * 13 4 3 32 32 H 1.08994 * 109.47481 * 149.99492 * 13 4 3 33 33 H 1.08002 * 122.75106 * 0.02562 * 15 14 13 34 34 H 1.09001 * 109.47143 * 60.00494 * 19 18 17 35 35 H 1.09007 * 109.46935 * 179.97438 * 19 18 17 36 36 H 1.09000 * 109.47650 * 300.00147 * 19 18 17 37 37 H 1.09003 * 109.47110 * 59.99701 * 20 18 17 38 38 H 1.08998 * 109.47649 * 180.02562 * 20 18 17 39 39 H 1.09009 * 109.47042 * 300.00288 * 20 18 17 40 40 H 1.08992 * 109.47519 * 59.99695 * 21 18 17 41 41 H 1.09007 * 109.46995 * 180.02562 * 21 18 17 42 42 H 1.09003 * 109.46777 * 299.99762 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.1902 1.5139 -1.1829 6 1 5.1275 0.9895 -1.2967 7 6 3.6773 2.2555 -2.2382 8 7 2.8078 3.2160 -2.0062 9 14 4.2209 1.8903 -3.9877 10 1 5.1981 0.7721 -3.9791 11 1 3.0400 1.5101 -4.8038 12 1 4.8573 3.0988 -4.5707 13 6 4.2371 1.3662 1.2673 14 6 4.4880 2.7583 1.7871 15 6 3.6831 3.4518 2.5976 16 7 4.1262 4.6527 2.9110 17 6 5.2603 5.0105 2.4104 18 6 5.9291 6.3392 2.6520 19 6 6.1952 6.5115 4.1488 20 6 7.2545 6.3892 1.8893 21 6 5.0165 7.4658 2.1633 22 16 5.8983 3.7559 1.4399 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6767 1.9564 0.8900 29 1 1.6768 1.9563 -0.8900 30 1 2.4496 3.7345 -2.7437 31 1 3.6477 0.8076 1.9945 32 1 5.1895 0.8611 1.1067 33 1 2.7462 3.0603 2.9657 34 1 6.8453 5.7089 4.4971 35 1 6.6794 7.4724 4.3235 36 1 5.2510 6.4759 4.6922 37 1 7.0649 6.2664 0.8230 38 1 7.7384 7.3500 2.0644 39 1 7.9046 5.5865 2.2376 40 1 4.0724 7.4302 2.7067 41 1 5.5005 8.4269 2.3376 42 1 4.8269 7.3430 1.0969 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092398404.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:38 Heat of formation + Delta-G solvation = 23.156839 kcal Electronic energy + Delta-G solvation = -20584.999231 eV Core-core repulsion = 17691.089048 eV Total energy + Delta-G solvation = -2893.910183 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.63661 -38.25780 -37.32687 -34.19919 -33.63847 -30.87173 -28.31062 -28.14965 -27.57638 -27.39330 -25.35906 -23.48810 -21.83546 -21.75829 -19.54432 -18.65689 -18.38487 -16.94978 -16.29261 -16.03474 -15.68372 -15.46319 -15.26021 -15.01874 -14.93956 -14.45251 -14.24623 -13.84786 -13.46651 -13.15112 -13.07728 -13.04534 -12.77449 -12.72761 -12.61155 -12.48781 -12.35347 -12.10733 -11.99950 -11.92667 -11.87307 -11.75175 -11.62111 -11.30167 -10.57769 -10.35577 -9.92873 -9.51078 -8.66662 -7.86657 -5.43436 0.02668 0.69659 1.12328 1.42333 1.46484 1.55325 2.06785 2.48857 3.22139 3.24971 3.71055 3.89021 4.00441 4.10979 4.32683 4.34259 4.42995 4.46971 4.54960 4.69724 4.70830 4.75490 4.82663 4.85049 4.88260 4.96598 4.97514 5.05442 5.10071 5.12391 5.17785 5.26870 5.35678 5.36807 5.39477 5.51322 5.55216 5.65283 5.89027 6.41512 6.98254 7.11299 7.78918 8.30932 9.09481 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.017124 B = 0.005811 C = 0.004905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.719195 B = 4817.551688 C = 5707.177692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.147 3.853 4 N -0.581 5.581 5 C -0.259 4.259 6 H 0.060 0.940 7 C -0.031 4.031 8 N -0.909 5.909 9 Si 0.951 3.049 10 H -0.265 1.265 11 H -0.289 1.289 12 H -0.294 1.294 13 C 0.209 3.791 14 C -0.210 4.210 15 C -0.002 4.002 16 N -0.490 5.490 17 C 0.028 3.972 18 C 0.011 3.989 19 C -0.124 4.124 20 C -0.149 4.149 21 C -0.129 4.129 22 S 0.116 5.884 23 H 0.066 0.934 24 H 0.055 0.945 25 H 0.039 0.961 26 H 0.040 0.960 27 H 0.055 0.945 28 H 0.018 0.982 29 H 0.066 0.934 30 H 0.250 0.750 31 H 0.080 0.920 32 H 0.059 0.941 33 H 0.166 0.834 34 H 0.054 0.946 35 H 0.090 0.910 36 H 0.050 0.950 37 H 0.047 0.953 38 H 0.099 0.901 39 H 0.064 0.936 40 H 0.048 0.952 41 H 0.093 0.907 42 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.490 3.075 9.336 11.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.168 4.168 3 C 0.021 3.979 4 N -0.300 5.300 5 C -0.390 4.390 6 H 0.078 0.922 7 C -0.229 4.229 8 N -0.552 5.552 9 Si 0.779 3.221 10 H -0.190 1.190 11 H -0.216 1.216 12 H -0.221 1.221 13 C 0.081 3.919 14 C -0.335 4.335 15 C -0.153 4.153 16 N -0.204 5.204 17 C -0.250 4.250 18 C 0.007 3.993 19 C -0.182 4.182 20 C -0.207 4.207 21 C -0.187 4.187 22 S 0.372 5.628 23 H 0.085 0.915 24 H 0.075 0.925 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.074 0.926 28 H 0.036 0.964 29 H 0.084 0.916 30 H 0.059 0.941 31 H 0.098 0.902 32 H 0.077 0.923 33 H 0.183 0.817 34 H 0.074 0.926 35 H 0.109 0.891 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.118 0.882 39 H 0.083 0.917 40 H 0.068 0.932 41 H 0.112 0.888 42 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 6.023 3.365 8.967 11.314 hybrid contribution -1.090 -0.363 -0.968 1.503 sum 4.933 3.003 7.999 9.866 Atomic orbital electron populations 1.21634 0.95140 1.01677 1.01175 1.21902 0.95733 0.98673 1.00475 1.20947 0.82599 0.94177 1.00153 1.44311 1.01687 1.83416 1.00554 1.19288 1.06405 1.23397 0.89866 0.92189 1.25747 1.00038 0.94934 1.02181 1.70150 1.34174 1.19866 1.31027 0.85476 0.77755 0.77649 0.81230 1.18957 1.21574 1.22065 1.19673 0.96820 0.87339 0.88116 1.27501 0.97958 1.06099 1.01899 1.21524 1.01872 0.90160 1.01723 1.66045 1.12734 1.16154 1.25497 1.27454 0.95990 1.02167 0.99379 1.19345 0.94796 0.86684 0.98506 1.21764 1.01797 1.03008 0.91654 1.21998 0.94904 1.04371 0.99389 1.21796 0.99184 0.97781 0.99971 1.83679 1.22535 1.09019 1.47595 0.91502 0.92546 0.94159 0.94117 0.92586 0.96367 0.91633 0.94118 0.90215 0.92289 0.81684 0.92640 0.89112 0.93091 0.93346 0.88183 0.91666 0.93233 0.88830 0.94582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.37 9.91 71.98 0.71 -3.66 16 2 C -0.13 -4.87 6.26 30.60 0.19 -4.68 16 3 C 0.15 6.78 5.26 86.38 0.45 7.23 16 4 N -0.58 -27.81 2.43 -706.36 -1.72 -29.53 16 5 C -0.26 -13.62 9.49 84.03 0.80 -12.83 16 6 H 0.06 3.15 7.92 -2.91 -0.02 3.13 16 7 C -0.03 -1.67 4.94 84.86 0.42 -1.25 16 8 N -0.91 -52.41 11.33 21.65 0.25 -52.17 16 9 Si 0.95 43.89 29.61 68.60 2.03 45.92 16 10 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 11 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 12 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 13 C 0.21 8.54 6.21 85.63 0.53 9.07 16 14 C -0.21 -8.68 6.18 24.64 0.15 -8.52 16 15 C 0.00 -0.10 11.25 83.66 0.94 0.84 16 16 N -0.49 -19.50 10.53 -191.45 -2.02 -21.52 16 17 C 0.03 1.01 5.78 88.52 0.51 1.53 16 18 C 0.01 0.28 0.99 -52.93 -0.05 0.23 16 19 C -0.12 -2.73 8.45 71.98 0.61 -2.13 16 20 C -0.15 -3.38 7.54 71.98 0.54 -2.84 16 21 C -0.13 -3.42 8.45 71.98 0.61 -2.81 16 22 S 0.12 4.43 21.57 -56.49 -1.22 3.21 16 23 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 24 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 25 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.02 0.82 8.10 -2.39 -0.02 0.80 16 29 H 0.07 3.54 5.33 -2.39 -0.01 3.53 16 30 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 31 H 0.08 2.87 8.07 -2.38 -0.02 2.85 16 32 H 0.06 2.34 8.04 -2.39 -0.02 2.32 16 33 H 0.17 6.25 8.06 -2.91 -0.02 6.23 16 34 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 36 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.05 1.26 7.93 -2.39 -0.02 1.24 16 38 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.06 1.43 7.92 -2.38 -0.02 1.41 16 40 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.09 1.80 8.14 -2.38 -0.02 1.78 16 42 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -62.40 354.87 4.70 -57.69 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: 0.96 Total: 16.20 kcal Atomic # 6 Polarization: -26.22 SS G_CDS: 6.42 Total: -19.80 kcal Atomic # 7 Polarization: -99.73 SS G_CDS: -3.49 Total: -103.21 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Atomic # 16 Polarization: 4.43 SS G_CDS: -1.22 Total: 3.21 kcal Total: -62.40 4.70 -57.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092398404.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.849 kcal (2) G-P(sol) polarization free energy of solvation -62.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds