Wall clock time and date at job start Tue Mar 31 2020 05:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47193 * 2 1 4 4 N 1.46508 * 109.47314 * 180.02562 * 3 2 1 5 5 C 1.36931 * 120.00103 * 93.45504 * 4 3 2 6 6 H 1.08011 * 119.99663 * 214.55100 * 5 4 3 7 7 C 1.38803 * 120.00212 * 34.27362 * 5 4 3 8 8 N 1.31616 * 120.00104 * 22.09757 * 7 5 4 9 9 Si 1.86802 * 120.00302 * 202.10227 * 7 5 4 10 10 H 1.48501 * 109.47419 * 89.99500 * 9 7 5 11 11 H 1.48496 * 109.47430 * 210.00128 * 9 7 5 12 12 H 1.48501 * 109.46955 * 329.99982 * 9 7 5 13 13 C 1.46504 * 119.99564 * 273.45943 * 4 3 2 14 14 C 1.50701 * 109.46748 * 269.99376 * 13 4 3 15 15 C 1.33638 * 126.03630 * 90.02813 * 14 13 4 16 16 N 1.31785 * 114.50285 * 180.02562 * 15 14 13 17 17 C 1.29026 * 117.12342 * 359.97438 * 16 15 14 18 18 C 1.50703 * 124.91864 * 180.02562 * 17 16 15 19 19 C 1.52995 * 109.47150 * 89.97178 * 18 17 16 20 20 C 1.52999 * 109.47454 * 65.00503 * 19 18 17 21 21 C 1.53003 * 109.46884 * 185.00138 * 19 18 17 22 22 S 1.70982 * 110.16467 * 359.72367 * 17 16 15 23 23 H 1.08995 * 109.47257 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.46857 * 299.99813 * 1 2 3 25 25 H 1.08996 * 109.47264 * 60.00037 * 1 2 3 26 26 H 1.09003 * 109.46857 * 240.00187 * 2 1 3 27 27 H 1.09008 * 109.47455 * 120.00327 * 2 1 3 28 28 H 1.08994 * 109.47219 * 60.00274 * 3 2 1 29 29 H 1.09001 * 109.47433 * 300.00181 * 3 2 1 30 30 H 0.97003 * 120.00473 * 179.97438 * 8 7 5 31 31 H 1.08997 * 109.47295 * 29.99614 * 13 4 3 32 32 H 1.08992 * 109.47062 * 150.00099 * 13 4 3 33 33 H 1.07997 * 122.75083 * 359.97438 * 15 14 13 34 34 H 1.08998 * 109.46902 * 209.97617 * 18 17 16 35 35 H 1.09000 * 109.46259 * 329.97130 * 18 17 16 36 36 H 1.09004 * 109.47118 * 304.99796 * 19 18 17 37 37 H 1.09003 * 109.47193 * 59.99131 * 20 19 18 38 38 H 1.09000 * 109.47181 * 179.97438 * 20 19 18 39 39 H 1.09011 * 109.46701 * 299.99942 * 20 19 18 40 40 H 1.09002 * 109.46984 * 59.99699 * 21 19 18 41 41 H 1.09000 * 109.47066 * 179.97438 * 21 19 18 42 42 H 1.08996 * 109.47237 * 299.99789 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4425 -0.0006 5 6 4.1892 1.5141 -1.1846 6 1 5.1264 0.9896 -1.2993 7 6 3.6756 2.2561 -2.2392 8 7 2.8062 3.2165 -2.0063 9 14 4.2180 1.8917 -3.9892 10 1 3.3126 0.8779 -4.5872 11 1 4.1650 3.1387 -4.7938 12 1 5.6078 1.3687 -3.9778 13 6 4.2380 1.3658 1.2656 14 6 4.4894 2.7577 1.7855 15 6 3.6851 3.4511 2.5969 16 7 4.1284 4.6519 2.9102 17 6 5.2621 5.0099 2.4088 18 6 5.9311 6.3386 2.6501 19 6 6.8378 6.2373 3.8783 20 6 7.9769 5.2569 3.5919 21 6 7.4198 7.6159 4.1975 22 16 5.8994 3.7553 1.4375 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6766 1.9564 -0.8900 30 1 2.4475 3.7353 -2.7432 31 1 3.6492 0.8070 1.9930 32 1 5.1903 0.8608 1.1041 33 1 2.7483 3.0598 2.9649 34 1 6.5280 6.6083 1.7789 35 1 5.1718 7.1018 2.8209 36 1 6.2578 5.8818 4.7299 37 1 8.5569 5.6124 2.7402 38 1 8.6232 5.1851 4.4667 39 1 7.5623 4.2747 3.3644 40 1 6.6083 8.3145 4.4015 41 1 8.0655 7.5439 5.0727 42 1 7.9998 7.9715 3.3459 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092398562.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:41 Heat of formation + Delta-G solvation = 33.375434 kcal Electronic energy + Delta-G solvation = -20268.671388 eV Core-core repulsion = 17375.204317 eV Total energy + Delta-G solvation = -2893.467071 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -38.98769 -36.56568 -35.93877 -32.59925 -31.98093 -29.98762 -27.93434 -27.15217 -25.68533 -24.89295 -23.11215 -21.81231 -20.35447 -20.05645 -18.41293 -17.25876 -16.73697 -15.14964 -15.02924 -14.58965 -14.34583 -14.17565 -13.82699 -13.66227 -13.38413 -13.07919 -12.64993 -12.44672 -12.34925 -12.15611 -11.90385 -11.55470 -11.34303 -11.12412 -11.02135 -10.93404 -10.84365 -10.79760 -10.62273 -10.45452 -10.31956 -10.03193 -9.94974 -9.57935 -8.88934 -8.59439 -8.34141 -7.94005 -6.76373 -5.90518 -3.42813 1.53486 2.20403 2.65502 3.30533 3.38356 3.38901 3.61634 4.39570 4.66232 4.93229 4.96960 5.20900 5.23481 5.42643 5.56356 5.60760 5.69369 5.80085 5.81579 5.86800 5.90320 5.96159 5.98514 6.04504 6.05688 6.17385 6.20465 6.33281 6.39250 6.40203 6.49925 6.57637 6.68967 6.83033 6.86026 6.99817 7.21596 7.66768 7.73316 8.37410 8.51792 9.04753 9.66313 10.22718 11.08473 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.018711 B = 0.005067 C = 0.004382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.118812 B = 5524.116780 C = 6388.342098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.139 4.139 3 C 0.143 3.857 4 N -0.566 5.566 5 C -0.259 4.259 6 H 0.066 0.934 7 C 0.015 3.985 8 N -0.876 5.876 9 Si 0.899 3.101 10 H -0.284 1.284 11 H -0.290 1.290 12 H -0.276 1.276 13 C 0.206 3.794 14 C -0.182 4.182 15 C -0.001 4.001 16 N -0.470 5.470 17 C 0.006 3.994 18 C -0.030 4.030 19 C -0.089 4.089 20 C -0.155 4.155 21 C -0.145 4.145 22 S 0.117 5.883 23 H 0.040 0.960 24 H 0.045 0.955 25 H 0.050 0.950 26 H 0.057 0.943 27 H 0.041 0.959 28 H 0.022 0.978 29 H 0.100 0.900 30 H 0.257 0.743 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.159 0.841 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.055 0.945 38 H 0.053 0.947 39 H 0.061 0.939 40 H 0.055 0.945 41 H 0.054 0.946 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.433 2.137 9.005 10.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.179 4.179 3 C 0.017 3.983 4 N -0.284 5.284 5 C -0.389 4.389 6 H 0.083 0.917 7 C -0.187 4.187 8 N -0.517 5.517 9 Si 0.728 3.272 10 H -0.211 1.211 11 H -0.216 1.216 12 H -0.201 1.201 13 C 0.076 3.924 14 C -0.307 4.307 15 C -0.152 4.152 16 N -0.184 5.184 17 C -0.272 4.272 18 C -0.071 4.071 19 C -0.109 4.109 20 C -0.212 4.212 21 C -0.202 4.202 22 S 0.371 5.629 23 H 0.059 0.941 24 H 0.064 0.936 25 H 0.069 0.931 26 H 0.076 0.924 27 H 0.060 0.940 28 H 0.040 0.960 29 H 0.117 0.883 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.176 0.824 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.092 0.908 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.957 2.499 8.620 10.772 hybrid contribution -0.839 -0.272 -0.765 1.168 sum 5.117 2.227 7.856 9.636 Atomic orbital electron populations 1.21688 0.97402 1.00014 1.01175 1.22060 0.93797 1.01299 1.00701 1.21069 0.82701 0.92411 1.02071 1.44250 1.01360 1.82747 1.00040 1.19150 1.06868 1.24295 0.88580 0.91654 1.25183 0.99399 0.94716 0.99368 1.70002 1.32292 1.18433 1.30935 0.86353 0.78768 0.77493 0.84605 1.21112 1.21621 1.20063 1.19691 0.96690 0.87034 0.88934 1.27573 0.96478 1.05957 1.00691 1.21281 1.01737 0.89988 1.02162 1.66069 1.11855 1.16276 1.24243 1.26513 0.96812 1.02249 1.01578 1.20167 0.97682 0.90914 0.98353 1.21074 0.96236 0.95915 0.97691 1.21990 0.97945 0.99953 1.01340 1.21825 1.00738 0.96315 1.01341 1.83761 1.22776 1.09057 1.47291 0.94053 0.93578 0.93083 0.92401 0.94026 0.95989 0.88266 0.93309 0.92181 0.92554 0.82411 0.90422 0.89794 0.90820 0.92565 0.92789 0.91992 0.92624 0.92680 0.92613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.91 37.16 0.37 -2.01 16 2 C -0.14 -2.68 6.26 -26.73 -0.17 -2.85 16 3 C 0.14 3.26 5.26 -4.04 -0.02 3.24 16 4 N -0.57 -13.44 2.43 -174.61 -0.42 -13.86 16 5 C -0.26 -6.71 9.49 -15.07 -0.14 -6.86 16 6 H 0.07 1.70 7.92 -52.48 -0.42 1.28 16 7 C 0.02 0.40 4.94 -17.44 -0.09 0.32 16 8 N -0.88 -24.57 11.33 55.49 0.63 -23.94 16 9 Si 0.90 20.98 29.61 -169.99 -5.03 15.95 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 13 C 0.21 4.21 6.21 -5.19 -0.03 4.18 16 14 C -0.18 -3.75 6.18 -35.92 -0.22 -3.97 16 15 C 0.00 -0.02 11.25 -19.18 -0.22 -0.24 16 16 N -0.47 -9.52 10.54 -11.86 -0.13 -9.65 16 17 C 0.01 0.11 6.02 -13.45 -0.08 0.03 16 18 C -0.03 -0.43 5.27 -27.88 -0.15 -0.58 16 19 C -0.09 -1.07 2.91 -90.62 -0.26 -1.33 16 20 C -0.15 -1.80 8.89 37.16 0.33 -1.47 16 21 C -0.14 -1.38 9.19 37.16 0.34 -1.04 16 22 S 0.12 2.24 21.62 -107.50 -2.32 -0.09 16 23 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.04 0.75 8.14 -51.92 -0.42 0.33 16 28 H 0.02 0.49 8.10 -51.93 -0.42 0.07 16 29 H 0.10 2.59 5.33 -51.93 -0.28 2.31 16 30 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 31 H 0.06 1.10 8.07 -51.93 -0.42 0.69 16 32 H 0.06 1.12 8.04 -51.93 -0.42 0.70 16 33 H 0.16 2.99 8.06 -52.49 -0.42 2.57 16 34 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.82 6.12 -51.92 -0.32 0.50 16 40 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 354.43 15.07 5.34 5.34 Total: -1.00 -28.62 354.43 -9.60 -38.22 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -7.32 Total: 0.61 kcal Atomic # 6 Polarization: -12.24 SS G_CDS: -0.34 Total: -12.58 kcal Atomic # 7 Polarization: -47.53 SS G_CDS: 0.08 Total: -47.45 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.03 Total: 15.95 kcal Atomic # 16 Polarization: 2.24 SS G_CDS: -2.32 Total: -0.09 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -28.62 -9.60 -38.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092398562.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.598 kcal (2) G-P(sol) polarization free energy of solvation -28.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds