Wall clock time and date at job start Tue Mar 31 2020 05:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46975 * 2 1 4 4 C 1.50703 * 109.46975 * 119.99775 * 2 1 3 5 5 H 1.08004 * 119.99501 * 120.00360 * 4 2 1 6 6 C 1.37873 * 120.00003 * 299.99700 * 4 2 1 7 7 N 1.31514 * 119.99980 * 180.02562 * 6 4 2 8 8 Si 1.86799 * 120.00317 * 0.02562 * 6 4 2 9 9 H 1.48504 * 109.47464 * 89.99432 * 8 6 4 10 10 H 1.48499 * 109.47257 * 209.99849 * 8 6 4 11 11 H 1.48504 * 109.46745 * 329.99575 * 8 6 4 12 12 N 1.46900 * 109.47002 * 239.99985 * 2 1 3 13 13 C 1.46899 * 110.99784 * 183.95572 * 12 2 1 14 14 C 1.46892 * 111.00044 * 60.00185 * 12 2 1 15 15 C 1.50707 * 109.47085 * 190.00188 * 14 12 2 16 16 C 1.33635 * 126.04014 * 89.95639 * 15 14 12 17 17 N 1.31783 * 114.50226 * 179.79203 * 16 15 14 18 18 C 1.29028 * 117.11870 * 0.47052 * 17 16 15 19 19 C 1.50708 * 124.91129 * 179.81479 * 18 17 16 20 20 C 1.52997 * 109.47141 * 59.69750 * 19 18 17 21 21 C 1.52992 * 109.47025 * 299.69357 * 19 18 17 22 22 C 1.53006 * 109.46735 * 179.69530 * 19 18 17 23 23 S 1.70978 * 110.17083 * 359.55110 * 18 17 16 24 24 H 1.08992 * 109.46796 * 59.99986 * 1 2 3 25 25 H 1.09001 * 109.46975 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47137 * 300.00135 * 1 2 3 27 27 H 0.96996 * 120.00591 * 180.02562 * 7 6 4 28 28 H 1.09007 * 109.47079 * 296.04297 * 13 12 2 29 29 H 1.09003 * 109.47714 * 56.04184 * 13 12 2 30 30 H 1.09001 * 109.47092 * 176.04546 * 13 12 2 31 31 H 1.09002 * 109.47616 * 69.99755 * 14 12 2 32 32 H 1.09000 * 109.47232 * 309.99591 * 14 12 2 33 33 H 1.08005 * 122.74809 * 0.03692 * 16 15 14 34 34 H 1.09002 * 109.47153 * 299.99670 * 20 19 18 35 35 H 1.09001 * 109.46832 * 179.97438 * 20 19 18 36 36 H 1.09004 * 109.47261 * 59.99842 * 20 19 18 37 37 H 1.09001 * 109.47066 * 180.02562 * 21 19 18 38 38 H 1.08996 * 109.47747 * 300.00019 * 21 19 18 39 39 H 1.09002 * 109.47103 * 60.00431 * 21 19 18 40 40 H 1.08993 * 109.46955 * 300.00223 * 22 19 18 41 41 H 1.09000 * 109.47050 * 60.00052 * 22 19 18 42 42 H 1.09001 * 109.47002 * 179.97438 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1381 -0.8589 3.5566 8 14 0.6249 1.2792 2.6541 9 1 -0.8028 0.8729 2.6997 10 1 0.9760 1.9952 3.9068 11 1 0.8472 2.1766 1.4920 12 7 2.0197 -0.6925 -1.1994 13 6 3.4851 -0.7946 -1.1870 14 6 1.5487 -0.0264 -2.4210 15 6 1.8580 -0.8912 -3.6159 16 6 1.0606 -1.8299 -4.1345 17 7 1.5576 -2.4489 -5.1864 18 6 2.7337 -2.0911 -5.5782 19 6 3.4683 -2.6824 -6.7538 20 6 2.6459 -2.4729 -8.0268 21 6 3.6783 -4.1802 -6.5229 22 6 4.8265 -1.9943 -6.9050 23 16 3.3352 -0.8439 -4.5751 24 1 -0.3632 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.9035 -0.5277 4.4376 28 1 3.9192 0.2044 -1.2300 29 1 3.8070 -1.2915 -0.2718 30 1 3.8164 -1.3722 -2.0499 31 1 2.0519 0.9346 -2.5280 32 1 0.4723 0.1324 -2.3564 33 1 0.0869 -2.0595 -3.7275 34 1 1.6783 -2.9631 -7.9191 35 1 3.1774 -2.9002 -8.8771 36 1 2.4963 -1.4057 -8.1912 37 1 4.2099 -4.6078 -7.3730 38 1 4.2642 -4.3295 -5.6160 39 1 2.7107 -4.6704 -6.4152 40 1 4.6769 -0.9273 -7.0693 41 1 5.4124 -2.1436 -5.9980 42 1 5.3580 -2.4223 -7.7549 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093090972.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:32 Heat of formation + Delta-G solvation = 45.746268 kcal Electronic energy + Delta-G solvation = -20294.039689 eV Core-core repulsion = 17401.109057 eV Total energy + Delta-G solvation = -2892.930632 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.78892 -37.58696 -36.55156 -32.94933 -30.98016 -29.70791 -27.64630 -27.43858 -26.92143 -25.15600 -24.40244 -22.90334 -20.95890 -19.63588 -18.42925 -17.66096 -16.77965 -15.76169 -15.12509 -14.94389 -14.41774 -14.38048 -14.23037 -13.97410 -13.47356 -13.27840 -12.99140 -12.58960 -12.48823 -12.35642 -12.13887 -12.00950 -11.88154 -11.65231 -11.34467 -11.21338 -11.14896 -10.97575 -10.75956 -10.65854 -10.45812 -10.18005 -9.57750 -9.42738 -9.10674 -8.98634 -8.61198 -8.54840 -7.45830 -6.10522 -4.09791 0.89442 1.49525 1.94897 3.03903 3.23445 3.32613 3.35439 4.02229 4.35729 4.60332 4.70596 4.80017 4.89608 5.17618 5.22589 5.28627 5.35555 5.41540 5.45079 5.54197 5.64841 5.69452 5.76254 5.82726 5.88694 5.98610 6.05662 6.08955 6.11801 6.21439 6.33023 6.40893 6.41846 6.51495 6.72440 6.85987 7.20518 7.51296 7.84271 7.92000 7.97875 8.59334 8.95525 9.50585 11.02099 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.038007 B = 0.003822 C = 0.003728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.531552 B = 7325.173029 C = 7508.114850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.182 3.818 3 H -0.001 1.001 4 C -0.507 4.507 5 H 0.084 0.916 6 C 0.071 3.929 7 N -0.898 5.898 8 Si 0.886 3.114 9 H -0.278 1.278 10 H -0.297 1.297 11 H -0.269 1.269 12 N -0.520 5.520 13 C 0.031 3.969 14 C 0.119 3.881 15 C -0.193 4.193 16 C 0.041 3.959 17 N -0.469 5.469 18 C 0.044 3.956 19 C 0.013 3.987 20 C -0.132 4.132 21 C -0.134 4.134 22 C -0.153 4.153 23 S 0.111 5.889 24 H 0.029 0.971 25 H 0.063 0.937 26 H 0.043 0.957 27 H 0.265 0.735 28 H 0.013 0.987 29 H 0.087 0.913 30 H 0.047 0.953 31 H 0.036 0.964 32 H 0.096 0.904 33 H 0.174 0.826 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.054 0.946 37 H 0.062 0.938 38 H 0.057 0.943 39 H 0.066 0.934 40 H 0.062 0.938 41 H 0.064 0.936 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.834 -0.439 -21.523 21.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.075 3.925 3 H 0.017 0.983 4 C -0.545 4.545 5 H 0.102 0.898 6 C -0.131 4.131 7 N -0.536 5.536 8 Si 0.717 3.283 9 H -0.205 1.205 10 H -0.224 1.224 11 H -0.195 1.195 12 N -0.244 5.244 13 C -0.117 4.117 14 C -0.011 4.011 15 C -0.314 4.314 16 C -0.109 4.109 17 N -0.182 5.182 18 C -0.234 4.234 19 C 0.009 3.991 20 C -0.191 4.191 21 C -0.193 4.193 22 C -0.211 4.211 23 S 0.366 5.634 24 H 0.048 0.952 25 H 0.082 0.918 26 H 0.061 0.939 27 H 0.074 0.926 28 H 0.031 0.969 29 H 0.106 0.894 30 H 0.066 0.934 31 H 0.054 0.946 32 H 0.114 0.886 33 H 0.191 0.809 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.276 -0.734 -21.547 21.807 hybrid contribution -1.211 1.425 0.767 2.021 sum 2.065 0.691 -20.779 20.893 Atomic orbital electron populations 1.22241 0.98450 1.01535 0.98296 1.19717 0.91533 0.92672 0.88541 0.98339 1.20956 1.32101 1.13659 0.87789 0.89833 1.24915 0.95792 0.96606 0.95769 1.69872 1.45572 1.40243 0.97900 0.86886 0.80820 0.83766 0.76873 1.20452 1.22438 1.19465 1.62002 1.10306 1.51644 1.00461 1.22369 0.87712 0.99107 1.02535 1.20594 1.01643 0.92301 0.86601 1.26035 0.96851 1.05161 1.03328 1.21610 1.02089 0.94206 0.93007 1.66144 1.10583 1.27492 1.13991 1.26927 0.94949 0.99688 1.01860 1.19163 0.93748 0.95932 0.90258 1.21823 1.00289 1.01982 0.95022 1.21830 1.02705 0.92921 1.01796 1.22019 0.95430 1.00750 1.02943 1.83896 1.20101 1.36202 1.23181 0.95189 0.91837 0.93863 0.92552 0.96876 0.89422 0.93414 0.94611 0.88628 0.80929 0.91509 0.91888 0.92661 0.91896 0.92408 0.91487 0.91926 0.91737 0.90944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.17 8.47 37.16 0.31 -2.86 16 2 C 0.18 4.26 1.65 -68.86 -0.11 4.15 16 3 H 0.00 -0.02 7.20 -51.93 -0.37 -0.39 16 4 C -0.51 -13.99 8.46 -34.44 -0.29 -14.29 16 5 H 0.08 2.51 6.65 -52.48 -0.35 2.16 16 6 C 0.07 2.02 5.45 -17.82 -0.10 1.92 16 7 N -0.90 -27.12 13.96 55.43 0.77 -26.34 16 8 Si 0.89 21.66 24.37 -169.99 -4.14 17.52 16 9 H -0.28 -6.61 6.87 56.52 0.39 -6.22 16 10 H -0.30 -7.28 7.11 56.52 0.40 -6.88 16 11 H -0.27 -6.32 6.53 56.52 0.37 -5.95 16 12 N -0.52 -10.71 4.61 -237.72 -1.10 -11.81 16 13 C 0.03 0.62 9.04 60.06 0.54 1.16 16 14 C 0.12 2.03 5.31 -4.98 -0.03 2.00 16 15 C -0.19 -3.01 5.31 -35.92 -0.19 -3.20 16 16 C 0.04 0.64 11.25 -19.19 -0.22 0.42 16 17 N -0.47 -7.06 10.53 -11.86 -0.12 -7.18 16 18 C 0.04 0.58 5.78 -13.45 -0.08 0.50 16 19 C 0.01 0.13 0.99 -155.66 -0.15 -0.03 16 20 C -0.13 -1.18 8.45 37.16 0.31 -0.86 16 21 C -0.13 -1.28 8.45 37.15 0.31 -0.97 16 22 C -0.15 -1.27 7.54 37.16 0.28 -0.98 16 23 S 0.11 1.48 20.21 -107.50 -2.17 -0.69 16 24 H 0.03 0.54 6.20 -51.93 -0.32 0.22 16 25 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 26 H 0.04 0.97 3.27 -51.93 -0.17 0.80 16 27 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 28 H 0.01 0.24 8.14 -51.92 -0.42 -0.18 16 29 H 0.09 1.93 6.10 -51.93 -0.32 1.61 16 30 H 0.05 0.85 6.12 -51.93 -0.32 0.53 16 31 H 0.04 0.60 8.12 -51.93 -0.42 0.17 16 32 H 0.10 1.55 5.83 -51.93 -0.30 1.25 16 33 H 0.17 2.48 8.06 -52.48 -0.42 2.05 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.51 7.92 -51.93 -0.41 0.09 16 41 H 0.06 0.56 7.92 -51.93 -0.41 0.15 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 335.31 15.07 5.05 5.05 Total: -1.00 -30.19 335.31 -7.92 -38.11 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -6.80 Total: -1.63 kcal Atomic # 6 Polarization: -13.62 SS G_CDS: 0.60 Total: -13.03 kcal Atomic # 7 Polarization: -44.89 SS G_CDS: -0.45 Total: -45.33 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.14 Total: 17.52 kcal Atomic # 16 Polarization: 1.48 SS G_CDS: -2.17 Total: -0.69 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.19 -7.92 -38.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093090972.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.854 kcal (2) G-P(sol) polarization free energy of solvation -30.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds