Wall clock time and date at job start Tue Mar 31 2020 05:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46975 * 2 1 4 4 C 1.50703 * 109.46975 * 119.99775 * 2 1 3 5 5 H 1.08004 * 119.99501 * 120.00360 * 4 2 1 6 6 C 1.37873 * 120.00003 * 299.99700 * 4 2 1 7 7 N 1.31514 * 119.99980 * 180.02562 * 6 4 2 8 8 Si 1.86799 * 120.00317 * 0.02562 * 6 4 2 9 9 H 1.48504 * 109.47464 * 89.99432 * 8 6 4 10 10 H 1.48499 * 109.47257 * 209.99849 * 8 6 4 11 11 H 1.48504 * 109.46745 * 329.99575 * 8 6 4 12 12 N 1.46900 * 109.47002 * 239.99985 * 2 1 3 13 13 C 1.46899 * 110.99784 * 183.95572 * 12 2 1 14 14 C 1.46892 * 111.00044 * 60.00185 * 12 2 1 15 15 C 1.50707 * 109.47085 * 190.00188 * 14 12 2 16 16 C 1.33635 * 126.04014 * 89.95639 * 15 14 12 17 17 N 1.31783 * 114.50226 * 179.79203 * 16 15 14 18 18 C 1.29028 * 117.11870 * 0.47052 * 17 16 15 19 19 C 1.50708 * 124.91129 * 179.81479 * 18 17 16 20 20 C 1.52997 * 109.47141 * 59.69750 * 19 18 17 21 21 C 1.52992 * 109.47025 * 299.69357 * 19 18 17 22 22 C 1.53006 * 109.46735 * 179.69530 * 19 18 17 23 23 S 1.70978 * 110.17083 * 359.55110 * 18 17 16 24 24 H 1.08992 * 109.46796 * 59.99986 * 1 2 3 25 25 H 1.09001 * 109.46975 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47137 * 300.00135 * 1 2 3 27 27 H 0.96996 * 120.00591 * 180.02562 * 7 6 4 28 28 H 1.09007 * 109.47079 * 296.04297 * 13 12 2 29 29 H 1.09003 * 109.47714 * 56.04184 * 13 12 2 30 30 H 1.09001 * 109.47092 * 176.04546 * 13 12 2 31 31 H 1.09002 * 109.47616 * 69.99755 * 14 12 2 32 32 H 1.09000 * 109.47232 * 309.99591 * 14 12 2 33 33 H 1.08005 * 122.74809 * 0.03692 * 16 15 14 34 34 H 1.09002 * 109.47153 * 299.99670 * 20 19 18 35 35 H 1.09001 * 109.46832 * 179.97438 * 20 19 18 36 36 H 1.09004 * 109.47261 * 59.99842 * 20 19 18 37 37 H 1.09001 * 109.47066 * 180.02562 * 21 19 18 38 38 H 1.08996 * 109.47747 * 300.00019 * 21 19 18 39 39 H 1.09002 * 109.47103 * 60.00431 * 21 19 18 40 40 H 1.08993 * 109.46955 * 300.00223 * 22 19 18 41 41 H 1.09000 * 109.47050 * 60.00052 * 22 19 18 42 42 H 1.09001 * 109.47002 * 179.97438 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1381 -0.8589 3.5566 8 14 0.6249 1.2792 2.6541 9 1 -0.8028 0.8729 2.6997 10 1 0.9760 1.9952 3.9068 11 1 0.8472 2.1766 1.4920 12 7 2.0197 -0.6925 -1.1994 13 6 3.4851 -0.7946 -1.1870 14 6 1.5487 -0.0264 -2.4210 15 6 1.8580 -0.8912 -3.6159 16 6 1.0606 -1.8299 -4.1345 17 7 1.5576 -2.4489 -5.1864 18 6 2.7337 -2.0911 -5.5782 19 6 3.4683 -2.6824 -6.7538 20 6 2.6459 -2.4729 -8.0268 21 6 3.6783 -4.1802 -6.5229 22 6 4.8265 -1.9943 -6.9050 23 16 3.3352 -0.8439 -4.5751 24 1 -0.3632 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.9035 -0.5277 4.4376 28 1 3.9192 0.2044 -1.2300 29 1 3.8070 -1.2915 -0.2718 30 1 3.8164 -1.3722 -2.0499 31 1 2.0519 0.9346 -2.5280 32 1 0.4723 0.1324 -2.3564 33 1 0.0869 -2.0595 -3.7275 34 1 1.6783 -2.9631 -7.9191 35 1 3.1774 -2.9002 -8.8771 36 1 2.4963 -1.4057 -8.1912 37 1 4.2099 -4.6078 -7.3730 38 1 4.2642 -4.3295 -5.6160 39 1 2.7107 -4.6704 -6.4152 40 1 4.6769 -0.9273 -7.0693 41 1 5.4124 -2.1436 -5.9980 42 1 5.3580 -2.4223 -7.7549 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093090972.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:32 Heat of formation + Delta-G solvation = 25.933505 kcal Electronic energy + Delta-G solvation = -20294.898835 eV Core-core repulsion = 17401.109057 eV Total energy + Delta-G solvation = -2893.789777 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.88389 -39.08945 -37.52965 -34.90295 -32.66503 -31.22150 -28.41095 -28.26625 -28.15664 -26.76124 -25.99073 -24.35169 -21.98976 -21.35879 -19.53054 -18.97956 -18.54355 -17.29261 -16.38985 -16.34056 -15.89012 -15.55344 -15.34195 -15.14902 -14.83345 -14.54700 -14.43380 -14.28156 -13.70074 -13.68703 -13.10964 -13.06531 -12.94295 -12.74791 -12.60446 -12.59087 -12.43345 -12.23063 -12.07621 -11.94391 -11.91187 -11.84463 -11.45010 -11.07617 -10.74290 -10.50861 -10.13370 -9.70282 -9.08466 -8.28779 -6.32696 -0.22461 0.40990 0.83837 1.30595 1.35160 1.45251 1.89479 2.31196 3.04646 3.09720 3.25339 3.83380 3.88140 3.97962 4.08584 4.14586 4.37250 4.39913 4.43373 4.53395 4.62931 4.71010 4.74186 4.75735 4.80188 4.86205 4.89718 4.97615 4.98316 5.01257 5.03520 5.14164 5.16288 5.29664 5.38032 5.40409 5.43560 5.62252 5.96342 6.26063 6.62328 6.73732 6.81285 7.31963 8.87529 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.038007 B = 0.003822 C = 0.003728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.531552 B = 7325.173029 C = 7508.114850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.185 3.815 3 H -0.005 1.005 4 C -0.509 4.509 5 H 0.041 0.959 6 C 0.013 3.987 7 N -0.948 5.948 8 Si 0.949 3.051 9 H -0.264 1.264 10 H -0.299 1.299 11 H -0.249 1.249 12 N -0.533 5.533 13 C 0.039 3.961 14 C 0.125 3.875 15 C -0.220 4.220 16 C 0.039 3.961 17 N -0.492 5.492 18 C 0.051 3.949 19 C 0.007 3.993 20 C -0.128 4.128 21 C -0.132 4.132 22 C -0.152 4.152 23 S 0.133 5.867 24 H 0.068 0.932 25 H 0.056 0.944 26 H 0.036 0.964 27 H 0.266 0.734 28 H 0.019 0.981 29 H 0.054 0.946 30 H 0.066 0.934 31 H 0.043 0.957 32 H 0.106 0.894 33 H 0.178 0.822 34 H 0.051 0.949 35 H 0.088 0.912 36 H 0.054 0.946 37 H 0.090 0.910 38 H 0.047 0.953 39 H 0.050 0.950 40 H 0.064 0.936 41 H 0.058 0.942 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.500 0.730 -24.247 24.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.078 3.922 3 H 0.012 0.988 4 C -0.547 4.547 5 H 0.059 0.941 6 C -0.184 4.184 7 N -0.588 5.588 8 Si 0.776 3.224 9 H -0.190 1.190 10 H -0.227 1.227 11 H -0.173 1.173 12 N -0.258 5.258 13 C -0.109 4.109 14 C -0.005 4.005 15 C -0.341 4.341 16 C -0.112 4.112 17 N -0.206 5.206 18 C -0.227 4.227 19 C 0.003 3.997 20 C -0.187 4.187 21 C -0.190 4.190 22 C -0.210 4.210 23 S 0.390 5.610 24 H 0.087 0.913 25 H 0.075 0.925 26 H 0.055 0.945 27 H 0.075 0.925 28 H 0.038 0.962 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.062 0.938 32 H 0.124 0.876 33 H 0.195 0.805 34 H 0.070 0.930 35 H 0.107 0.893 36 H 0.073 0.927 37 H 0.109 0.891 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.083 0.917 41 H 0.077 0.923 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.946 0.439 -24.302 24.484 hybrid contribution -0.996 0.930 1.491 2.020 sum 1.950 1.369 -22.811 22.935 Atomic orbital electron populations 1.22141 0.96511 1.01667 0.99817 1.19547 0.92970 0.91749 0.87966 0.98762 1.21206 1.31071 1.12430 0.90010 0.94056 1.25769 0.97367 0.99977 0.95291 1.70030 1.47706 1.42525 0.98576 0.85856 0.79352 0.79943 0.77247 1.18983 1.22735 1.17315 1.61903 1.10514 1.52261 1.01098 1.22235 0.87733 0.99332 1.01611 1.20551 1.02184 0.92517 0.85251 1.25908 0.98424 1.05956 1.03801 1.21793 1.02401 0.93922 0.93039 1.66209 1.11646 1.28267 1.14453 1.27655 0.94393 0.98668 1.01958 1.19432 0.94585 0.96165 0.89470 1.21805 0.99690 1.02032 0.95185 1.21826 1.02035 0.92583 1.02588 1.22042 0.94289 1.00885 1.03805 1.83765 1.18723 1.36006 1.22530 0.91345 0.92522 0.94512 0.92510 0.96220 0.92754 0.91589 0.93847 0.87614 0.80515 0.92963 0.89277 0.92686 0.89139 0.93369 0.93036 0.91696 0.92285 0.88418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.87 8.47 71.98 0.61 -5.26 16 2 C 0.19 8.53 1.65 44.17 0.07 8.61 16 3 H -0.01 -0.24 7.20 -2.39 -0.02 -0.25 16 4 C -0.51 -28.84 8.46 25.60 0.22 -28.62 16 5 H 0.04 2.63 6.65 -2.91 -0.02 2.61 16 6 C 0.01 0.76 5.45 84.65 0.46 1.23 16 7 N -0.95 -59.13 13.96 21.45 0.30 -58.84 16 8 Si 0.95 44.32 24.37 68.60 1.67 45.99 16 9 H -0.26 -11.68 6.87 99.48 0.68 -11.00 16 10 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 11 H -0.25 -10.73 6.53 99.48 0.65 -10.08 16 12 N -0.53 -21.70 4.61 -906.02 -4.18 -25.88 16 13 C 0.04 1.57 9.04 127.69 1.15 2.72 16 14 C 0.12 4.03 5.31 85.56 0.45 4.48 16 15 C -0.22 -6.56 5.31 24.64 0.13 -6.43 16 16 C 0.04 1.17 11.25 83.66 0.94 2.11 16 17 N -0.49 -14.30 10.53 -191.44 -2.02 -16.32 16 18 C 0.05 1.27 5.78 88.52 0.51 1.78 16 19 C 0.01 0.13 0.99 -52.93 -0.05 0.08 16 20 C -0.13 -1.95 8.45 71.98 0.61 -1.34 16 21 C -0.13 -2.26 8.45 71.98 0.61 -1.65 16 22 C -0.15 -2.06 7.54 71.98 0.54 -1.52 16 23 S 0.13 3.35 20.21 -56.49 -1.14 2.21 16 24 H 0.07 2.24 6.20 -2.39 -0.01 2.23 16 25 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 26 H 0.04 1.54 3.27 -2.39 -0.01 1.53 16 27 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 28 H 0.02 0.73 8.14 -2.38 -0.02 0.71 16 29 H 0.05 2.50 6.10 -2.39 -0.01 2.48 16 30 H 0.07 2.33 6.12 -2.39 -0.01 2.31 16 31 H 0.04 1.34 8.12 -2.39 -0.02 1.32 16 32 H 0.11 3.14 5.83 -2.39 -0.01 3.13 16 33 H 0.18 4.92 8.06 -2.91 -0.02 4.90 16 34 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 37 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.06 0.86 7.92 -2.39 -0.02 0.84 16 41 H 0.06 0.87 7.92 -2.39 -0.02 0.85 16 42 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -66.65 335.31 1.80 -64.85 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: 0.91 Total: 11.80 kcal Atomic # 6 Polarization: -30.07 SS G_CDS: 6.26 Total: -23.81 kcal Atomic # 7 Polarization: -95.13 SS G_CDS: -5.90 Total: -101.03 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 1.67 Total: 45.99 kcal Atomic # 16 Polarization: 3.35 SS G_CDS: -1.14 Total: 2.21 kcal Total: -66.65 1.80 -64.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093090972.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.780 kcal (2) G-P(sol) polarization free energy of solvation -66.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds