Wall clock time and date at job start Tue Mar 31 2020 05:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46980 * 89.99582 * 8 6 4 10 10 H 1.48493 * 109.47135 * 209.99651 * 8 6 4 11 11 H 1.48498 * 109.47274 * 330.00048 * 8 6 4 12 12 N 1.46902 * 109.47094 * 119.99508 * 2 1 3 13 13 C 1.46900 * 110.99736 * 58.95813 * 12 2 1 14 14 C 1.46895 * 111.00186 * 295.00225 * 12 2 1 15 15 C 1.50703 * 109.46874 * 189.99595 * 14 12 2 16 16 C 1.33638 * 126.03714 * 89.69748 * 15 14 12 17 17 N 1.31786 * 114.50220 * 179.78725 * 16 15 14 18 18 C 1.29020 * 117.12095 * 0.51312 * 17 16 15 19 19 C 1.50706 * 124.91449 * 179.74754 * 18 17 16 20 20 C 1.53003 * 109.46622 * 59.96803 * 19 18 17 21 21 C 1.53001 * 109.47101 * 179.97438 * 19 18 17 22 22 C 1.52994 * 109.47468 * 299.96736 * 19 18 17 23 23 S 1.70974 * 110.17064 * 359.71992 * 18 17 16 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 27 27 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 28 28 H 1.08997 * 109.47292 * 59.99623 * 13 12 2 29 29 H 1.09002 * 109.47267 * 179.97438 * 13 12 2 30 30 H 1.09000 * 109.47210 * 300.00139 * 13 12 2 31 31 H 1.08999 * 109.47066 * 309.99575 * 14 12 2 32 32 H 1.09001 * 109.47511 * 70.00176 * 14 12 2 33 33 H 1.08004 * 122.74637 * 359.96730 * 16 15 14 34 34 H 1.08993 * 109.47099 * 59.99611 * 20 19 18 35 35 H 1.08999 * 109.46688 * 179.97438 * 20 19 18 36 36 H 1.09007 * 109.46868 * 299.99612 * 20 19 18 37 37 H 1.08998 * 109.47180 * 60.00189 * 21 19 18 38 38 H 1.08994 * 109.46927 * 180.02562 * 21 19 18 39 39 H 1.09005 * 109.46855 * 300.00569 * 21 19 18 40 40 H 1.08999 * 109.47618 * 59.99555 * 22 19 18 41 41 H 1.08999 * 109.47198 * 180.02562 * 22 19 18 42 42 H 1.09003 * 109.47135 * 299.99944 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.3429 -2.1618 -4.4118 10 1 2.4867 -0.1415 -5.1122 11 1 3.6294 -1.7584 -3.7121 12 7 2.0196 -0.6924 1.1995 13 6 1.5283 -2.0760 1.2460 14 6 1.6487 0.0393 2.4181 15 6 2.3678 -0.5571 3.6006 16 6 3.5697 -0.1911 4.0561 17 7 3.9824 -0.8642 5.1113 18 6 3.2000 -1.7843 5.5650 19 6 3.4979 -2.6608 6.7542 20 6 3.6866 -1.7879 7.9965 21 6 2.3326 -3.6260 6.9810 22 6 4.7769 -3.4585 6.4923 23 16 1.7759 -1.8649 4.6222 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 0.7089 1.1612 -3.4844 28 1 1.8762 -2.6150 0.3648 29 1 1.9060 -2.5657 2.1436 30 1 0.4385 -2.0742 1.2639 31 1 1.9297 1.0871 2.3124 32 1 0.5722 -0.0344 2.5727 33 1 4.1536 0.5940 3.5988 34 1 2.7754 -1.2197 8.1830 35 1 3.9016 -2.4218 8.8567 36 1 4.5169 -1.1004 7.8347 37 1 2.1983 -4.2479 6.0960 38 1 2.5479 -4.2596 7.8414 39 1 1.4213 -3.0578 7.1675 40 1 5.6072 -2.7710 6.3305 41 1 4.9921 -4.0927 7.3522 42 1 4.6425 -4.0803 5.6072 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093090973.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:35 Heat of formation + Delta-G solvation = 36.195090 kcal Electronic energy + Delta-G solvation = -20258.398695 eV Core-core repulsion = 17365.053893 eV Total energy + Delta-G solvation = -2893.344802 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.72769 -37.52176 -36.51659 -32.97315 -30.72668 -28.39381 -27.61268 -27.41485 -26.68008 -25.21321 -24.91710 -22.89701 -20.90111 -19.45849 -18.32102 -17.53763 -16.21056 -15.55282 -15.26733 -14.78737 -14.33523 -14.31971 -14.12204 -13.68345 -13.46388 -13.39709 -12.77598 -12.52656 -12.34224 -12.19522 -11.85825 -11.80253 -11.43563 -11.32874 -11.19237 -11.15314 -11.11710 -10.89339 -10.82052 -10.69096 -10.43649 -10.07427 -9.91274 -9.36163 -8.98325 -8.90064 -8.49139 -8.41903 -7.22662 -6.03784 -4.07648 0.96235 1.55641 2.01196 3.10231 3.29581 3.36425 3.40884 4.06679 4.40014 4.63490 4.73366 4.92367 5.08771 5.27992 5.31543 5.32668 5.39214 5.43749 5.56626 5.58489 5.67003 5.71774 5.79316 5.89948 6.03755 6.09734 6.13347 6.14740 6.18477 6.36618 6.48199 6.61955 6.76943 6.85289 7.05408 7.40628 7.66768 7.78988 7.97561 8.04793 8.32132 8.52961 8.97873 9.57517 11.03341 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.033900 B = 0.003718 C = 0.003636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.765081 B = 7528.477863 C = 7699.045197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.211 3.789 3 H 0.041 0.959 4 C -0.500 4.500 5 H 0.063 0.937 6 C 0.059 3.941 7 N -0.894 5.894 8 Si 0.896 3.104 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.273 1.273 12 N -0.527 5.527 13 C 0.030 3.970 14 C 0.125 3.875 15 C -0.189 4.189 16 C 0.038 3.962 17 N -0.468 5.468 18 C 0.041 3.959 19 C 0.013 3.987 20 C -0.132 4.132 21 C -0.153 4.153 22 C -0.133 4.133 23 S 0.108 5.892 24 H 0.031 0.969 25 H 0.090 0.910 26 H 0.007 0.993 27 H 0.260 0.740 28 H 0.075 0.925 29 H 0.042 0.958 30 H 0.019 0.981 31 H 0.089 0.911 32 H 0.039 0.961 33 H 0.174 0.826 34 H 0.054 0.946 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.071 0.929 39 H 0.062 0.938 40 H 0.066 0.934 41 H 0.062 0.938 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.672 -6.385 18.828 19.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.105 3.895 3 H 0.059 0.941 4 C -0.538 4.538 5 H 0.081 0.919 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.724 3.276 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.198 1.198 12 N -0.251 5.251 13 C -0.119 4.119 14 C -0.005 4.005 15 C -0.310 4.310 16 C -0.113 4.113 17 N -0.182 5.182 18 C -0.237 4.237 19 C 0.009 3.991 20 C -0.191 4.191 21 C -0.211 4.211 22 C -0.192 4.192 23 S 0.363 5.637 24 H 0.050 0.950 25 H 0.108 0.892 26 H 0.026 0.974 27 H 0.070 0.930 28 H 0.094 0.906 29 H 0.061 0.939 30 H 0.038 0.962 31 H 0.107 0.893 32 H 0.057 0.943 33 H 0.191 0.809 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.714 -6.774 18.921 20.170 hybrid contribution -0.159 0.356 -1.397 1.451 sum 1.556 -6.418 17.523 18.726 Atomic orbital electron populations 1.22426 1.00795 0.99451 1.00625 1.19350 0.89794 0.94646 0.85671 0.94078 1.21094 1.30665 1.12526 0.89556 0.91910 1.24917 0.95199 0.95104 0.98996 1.69876 1.37020 1.23021 1.23464 0.86517 0.79273 0.79284 0.82477 1.20812 1.21256 1.19822 1.62428 1.59476 1.02017 1.01215 1.22333 0.97159 0.91195 1.01222 1.20462 0.95529 0.97816 0.86732 1.26135 1.00218 1.01483 1.03137 1.21620 0.94078 1.01961 0.93595 1.66134 1.32947 1.06792 1.12302 1.26898 0.94890 0.99941 1.02010 1.19149 0.96845 0.92970 0.90093 1.21822 1.02529 0.99438 0.95323 1.22014 0.97226 0.99119 1.02750 1.21828 0.96100 0.99631 1.01661 1.83880 1.22671 1.33937 1.23165 0.95007 0.89168 0.97400 0.92964 0.90612 0.93889 0.96232 0.89330 0.94287 0.80909 0.92643 0.91934 0.91520 0.91779 0.90996 0.91914 0.91500 0.91946 0.92471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.12 8.28 37.16 0.31 -3.81 16 2 C 0.21 5.21 2.34 -68.87 -0.16 5.05 16 3 H 0.04 1.11 8.03 -51.93 -0.42 0.69 16 4 C -0.50 -13.53 7.94 -34.44 -0.27 -13.80 16 5 H 0.06 1.72 6.75 -52.49 -0.35 1.36 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 7 N -0.89 -25.17 11.32 55.43 0.63 -24.54 16 8 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 9 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 11 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 12 N -0.53 -11.25 4.73 -237.74 -1.13 -12.38 16 13 C 0.03 0.59 8.70 60.06 0.52 1.11 16 14 C 0.13 2.27 4.94 -4.98 -0.02 2.24 16 15 C -0.19 -3.08 5.32 -35.92 -0.19 -3.27 16 16 C 0.04 0.61 11.25 -19.18 -0.22 0.39 16 17 N -0.47 -7.28 10.53 -11.86 -0.12 -7.40 16 18 C 0.04 0.56 5.78 -13.46 -0.08 0.48 16 19 C 0.01 0.14 0.99 -155.66 -0.15 -0.02 16 20 C -0.13 -1.22 8.45 37.16 0.31 -0.90 16 21 C -0.15 -1.30 7.54 37.16 0.28 -1.02 16 22 C -0.13 -1.31 8.45 37.15 0.31 -0.99 16 23 S 0.11 1.51 20.10 -107.50 -2.16 -0.65 16 24 H 0.03 0.73 6.38 -51.93 -0.33 0.40 16 25 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16 26 H 0.01 0.15 6.75 -51.93 -0.35 -0.20 16 27 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 28 H 0.08 1.61 6.53 -51.93 -0.34 1.28 16 29 H 0.04 0.77 5.87 -51.93 -0.30 0.47 16 30 H 0.02 0.38 6.28 -51.93 -0.33 0.06 16 31 H 0.09 1.57 8.00 -51.93 -0.42 1.15 16 32 H 0.04 0.70 6.94 -51.93 -0.36 0.34 16 33 H 0.17 2.61 8.06 -52.48 -0.42 2.18 16 34 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.69 8.14 -51.92 -0.42 0.26 16 37 H 0.06 0.57 7.92 -51.93 -0.41 0.16 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.53 7.92 -51.93 -0.41 0.12 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 339.61 15.07 5.12 5.12 Total: -1.00 -28.62 339.61 -9.00 -37.62 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -6.85 Total: -0.94 kcal Atomic # 6 Polarization: -13.58 SS G_CDS: 0.55 Total: -13.04 kcal Atomic # 7 Polarization: -43.70 SS G_CDS: -0.62 Total: -44.33 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: 1.51 SS G_CDS: -2.16 Total: -0.65 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -28.62 -9.00 -37.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093090973.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.813 kcal (2) G-P(sol) polarization free energy of solvation -28.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds