Wall clock time and date at job start Tue Mar 31 2020 05:23:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46980 * 89.99582 * 8 6 4 10 10 H 1.48493 * 109.47135 * 209.99651 * 8 6 4 11 11 H 1.48498 * 109.47274 * 330.00048 * 8 6 4 12 12 N 1.46902 * 109.47094 * 119.99508 * 2 1 3 13 13 C 1.46900 * 110.99736 * 58.95813 * 12 2 1 14 14 C 1.46895 * 111.00186 * 295.00225 * 12 2 1 15 15 C 1.50703 * 109.46874 * 189.99595 * 14 12 2 16 16 C 1.33638 * 126.03714 * 89.69748 * 15 14 12 17 17 N 1.31786 * 114.50220 * 179.78725 * 16 15 14 18 18 C 1.29020 * 117.12095 * 0.51312 * 17 16 15 19 19 C 1.50706 * 124.91449 * 179.74754 * 18 17 16 20 20 C 1.53003 * 109.46622 * 59.96803 * 19 18 17 21 21 C 1.53001 * 109.47101 * 179.97438 * 19 18 17 22 22 C 1.52994 * 109.47468 * 299.96736 * 19 18 17 23 23 S 1.70974 * 110.17064 * 359.71992 * 18 17 16 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 27 27 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 28 28 H 1.08997 * 109.47292 * 59.99623 * 13 12 2 29 29 H 1.09002 * 109.47267 * 179.97438 * 13 12 2 30 30 H 1.09000 * 109.47210 * 300.00139 * 13 12 2 31 31 H 1.08999 * 109.47066 * 309.99575 * 14 12 2 32 32 H 1.09001 * 109.47511 * 70.00176 * 14 12 2 33 33 H 1.08004 * 122.74637 * 359.96730 * 16 15 14 34 34 H 1.08993 * 109.47099 * 59.99611 * 20 19 18 35 35 H 1.08999 * 109.46688 * 179.97438 * 20 19 18 36 36 H 1.09007 * 109.46868 * 299.99612 * 20 19 18 37 37 H 1.08998 * 109.47180 * 60.00189 * 21 19 18 38 38 H 1.08994 * 109.46927 * 180.02562 * 21 19 18 39 39 H 1.09005 * 109.46855 * 300.00569 * 21 19 18 40 40 H 1.08999 * 109.47618 * 59.99555 * 22 19 18 41 41 H 1.08999 * 109.47198 * 180.02562 * 22 19 18 42 42 H 1.09003 * 109.47135 * 299.99944 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.3429 -2.1618 -4.4118 10 1 2.4867 -0.1415 -5.1122 11 1 3.6294 -1.7584 -3.7121 12 7 2.0196 -0.6924 1.1995 13 6 1.5283 -2.0760 1.2460 14 6 1.6487 0.0393 2.4181 15 6 2.3678 -0.5571 3.6006 16 6 3.5697 -0.1911 4.0561 17 7 3.9824 -0.8642 5.1113 18 6 3.2000 -1.7843 5.5650 19 6 3.4979 -2.6608 6.7542 20 6 3.6866 -1.7879 7.9965 21 6 2.3326 -3.6260 6.9810 22 6 4.7769 -3.4585 6.4923 23 16 1.7759 -1.8649 4.6222 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 0.7089 1.1612 -3.4844 28 1 1.8762 -2.6150 0.3648 29 1 1.9060 -2.5657 2.1436 30 1 0.4385 -2.0742 1.2639 31 1 1.9297 1.0871 2.3124 32 1 0.5722 -0.0344 2.5727 33 1 4.1536 0.5940 3.5988 34 1 2.7754 -1.2197 8.1830 35 1 3.9016 -2.4218 8.8567 36 1 4.5169 -1.1004 7.8347 37 1 2.1983 -4.2479 6.0960 38 1 2.5479 -4.2596 7.8414 39 1 1.4213 -3.0578 7.1675 40 1 5.6072 -2.7710 6.3305 41 1 4.9921 -4.0927 7.3522 42 1 4.6425 -4.0803 5.6072 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093090973.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:34 Heat of formation + Delta-G solvation = 19.532932 kcal Electronic energy + Delta-G solvation = -20259.121220 eV Core-core repulsion = 17365.053893 eV Total energy + Delta-G solvation = -2894.067327 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.88040 -39.09963 -37.53248 -34.90817 -32.27007 -30.13391 -28.31842 -28.15271 -28.08924 -27.20860 -26.32148 -24.40283 -21.95871 -21.22424 -19.47801 -18.65463 -18.21516 -17.17563 -16.49822 -16.28377 -15.66330 -15.46838 -15.28722 -15.22289 -14.68987 -14.56391 -14.35095 -13.93803 -13.39948 -13.18051 -13.08119 -12.96268 -12.92022 -12.68471 -12.59595 -12.58670 -12.52541 -12.33737 -12.08371 -11.99308 -11.93415 -11.83347 -11.73650 -10.94963 -10.51427 -10.49942 -10.12702 -9.70044 -8.92531 -8.11901 -6.22605 -0.21569 0.40797 0.83745 1.41658 1.43168 1.53452 1.89460 2.42648 3.09965 3.17582 3.44558 3.84028 3.90416 3.98682 4.09194 4.19110 4.41428 4.48620 4.59466 4.64985 4.72292 4.76443 4.79461 4.83859 4.86882 4.91884 4.98411 4.98868 5.03687 5.10676 5.12120 5.16592 5.30269 5.38832 5.43795 5.50777 5.68597 5.76451 6.14449 6.41856 6.65383 6.81147 6.89562 7.46480 8.94166 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.033900 B = 0.003718 C = 0.003636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.765081 B = 7528.477863 C = 7699.045197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.216 3.784 3 H 0.012 0.988 4 C -0.516 4.516 5 H 0.055 0.945 6 C 0.014 3.986 7 N -0.919 5.919 8 Si 0.957 3.043 9 H -0.275 1.275 10 H -0.284 1.284 11 H -0.272 1.272 12 N -0.539 5.539 13 C 0.038 3.962 14 C 0.132 3.868 15 C -0.218 4.218 16 C 0.036 3.964 17 N -0.491 5.491 18 C 0.050 3.950 19 C 0.008 3.992 20 C -0.129 4.129 21 C -0.152 4.152 22 C -0.131 4.131 23 S 0.138 5.862 24 H 0.032 0.968 25 H 0.063 0.937 26 H 0.027 0.973 27 H 0.262 0.738 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.021 0.979 31 H 0.085 0.915 32 H 0.042 0.958 33 H 0.174 0.826 34 H 0.053 0.947 35 H 0.089 0.911 36 H 0.051 0.949 37 H 0.059 0.941 38 H 0.098 0.902 39 H 0.063 0.937 40 H 0.050 0.950 41 H 0.090 0.910 42 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.721 -8.107 20.528 22.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.109 3.891 3 H 0.030 0.970 4 C -0.554 4.554 5 H 0.073 0.927 6 C -0.185 4.185 7 N -0.559 5.559 8 Si 0.783 3.217 9 H -0.201 1.201 10 H -0.209 1.209 11 H -0.196 1.196 12 N -0.262 5.262 13 C -0.111 4.111 14 C 0.002 3.998 15 C -0.339 4.339 16 C -0.114 4.114 17 N -0.205 5.205 18 C -0.228 4.228 19 C 0.004 3.996 20 C -0.188 4.188 21 C -0.210 4.210 22 C -0.190 4.190 23 S 0.394 5.606 24 H 0.051 0.949 25 H 0.082 0.918 26 H 0.046 0.954 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.040 0.960 31 H 0.103 0.897 32 H 0.060 0.940 33 H 0.191 0.809 34 H 0.072 0.928 35 H 0.108 0.892 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.117 0.883 39 H 0.082 0.918 40 H 0.069 0.931 41 H 0.109 0.891 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.755 -8.504 20.632 22.385 hybrid contribution -0.136 0.867 -1.793 1.996 sum 1.618 -7.637 18.839 20.392 Atomic orbital electron populations 1.22218 1.00106 0.99300 1.00262 1.19095 0.90174 0.93133 0.86673 0.97034 1.21348 1.30700 1.12475 0.90874 0.92680 1.25646 0.95377 0.95767 1.01699 1.69996 1.37798 1.24073 1.24056 0.85564 0.78767 0.78287 0.79060 1.20101 1.20922 1.19633 1.62281 1.59882 1.02666 1.01407 1.22254 0.97189 0.90340 1.01309 1.20333 0.95860 0.97525 0.86047 1.25927 1.00818 1.03516 1.03649 1.21751 0.94036 1.01927 0.93716 1.66203 1.33709 1.07895 1.12646 1.27684 0.94053 0.98975 1.02076 1.19438 0.98004 0.93080 0.89092 1.21810 1.01890 0.99446 0.95618 1.22042 0.96321 0.98899 1.03751 1.21824 0.95112 0.99419 1.02627 1.83701 1.22316 1.32320 1.22219 0.94887 0.91780 0.95397 0.92918 0.92363 0.91925 0.96024 0.89690 0.94008 0.80896 0.92768 0.89185 0.93020 0.92171 0.88347 0.91780 0.93081 0.89090 0.93251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.62 8.28 71.98 0.60 -7.03 16 2 C 0.22 10.88 2.34 44.17 0.10 10.98 16 3 H 0.01 0.65 8.03 -2.39 -0.02 0.63 16 4 C -0.52 -28.31 7.94 25.60 0.20 -28.11 16 5 H 0.06 3.05 6.75 -2.91 -0.02 3.03 16 6 C 0.01 0.76 5.30 84.66 0.45 1.21 16 7 N -0.92 -52.47 11.32 21.45 0.24 -52.23 16 8 Si 0.96 43.75 29.54 68.60 2.03 45.77 16 9 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 10 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 11 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 12 N -0.54 -23.13 4.73 -906.06 -4.29 -27.42 16 13 C 0.04 1.48 8.70 127.69 1.11 2.60 16 14 C 0.13 4.80 4.94 85.56 0.42 5.22 16 15 C -0.22 -7.02 5.32 24.64 0.13 -6.88 16 16 C 0.04 1.16 11.25 83.66 0.94 2.10 16 17 N -0.49 -14.90 10.53 -191.44 -2.02 -16.91 16 18 C 0.05 1.29 5.78 88.52 0.51 1.80 16 19 C 0.01 0.14 0.99 -52.93 -0.05 0.09 16 20 C -0.13 -2.04 8.45 71.98 0.61 -1.43 16 21 C -0.15 -2.09 7.54 71.98 0.54 -1.55 16 22 C -0.13 -2.26 8.45 71.98 0.61 -1.65 16 23 S 0.14 3.63 20.10 -56.49 -1.14 2.49 16 24 H 0.03 1.52 6.38 -2.39 -0.02 1.51 16 25 H 0.06 3.42 6.07 -2.39 -0.01 3.40 16 26 H 0.03 1.17 6.75 -2.38 -0.02 1.16 16 27 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 28 H 0.06 2.48 6.53 -2.39 -0.02 2.46 16 29 H 0.06 2.19 5.87 -2.39 -0.01 2.17 16 30 H 0.02 0.83 6.28 -2.39 -0.01 0.82 16 31 H 0.08 3.07 8.00 -2.39 -0.02 3.05 16 32 H 0.04 1.48 6.94 -2.39 -0.02 1.46 16 33 H 0.17 5.32 8.06 -2.91 -0.02 5.30 16 34 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 37 H 0.06 0.89 7.92 -2.39 -0.02 0.87 16 38 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.06 0.88 7.92 -2.38 -0.02 0.86 16 40 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.09 1.04 8.14 -2.39 -0.02 1.03 16 42 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -61.31 339.61 1.99 -59.32 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: 0.99 Total: 11.63 kcal Atomic # 6 Polarization: -28.82 SS G_CDS: 6.17 Total: -22.65 kcal Atomic # 7 Polarization: -90.50 SS G_CDS: -6.06 Total: -96.56 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.77 kcal Atomic # 16 Polarization: 3.63 SS G_CDS: -1.14 Total: 2.49 kcal Total: -61.31 1.99 -59.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093090973.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.852 kcal (2) G-P(sol) polarization free energy of solvation -61.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds