Wall clock time and date at job start Tue Mar 31 2020 05:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46704 * 2 1 4 4 N 1.46499 * 109.46703 * 179.97438 * 3 2 1 5 5 C 1.36936 * 120.00694 * 269.51376 * 4 3 2 6 6 H 1.07999 * 119.99666 * 326.08722 * 5 4 3 7 7 C 1.38808 * 120.00452 * 146.08783 * 5 4 3 8 8 N 1.31618 * 119.99791 * 336.60396 * 7 5 4 9 9 Si 1.86798 * 120.00168 * 156.60817 * 7 5 4 10 10 H 1.48502 * 109.47001 * 59.99879 * 9 7 5 11 11 H 1.48505 * 109.47174 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.46854 * 299.99772 * 9 7 5 13 13 C 1.46508 * 119.99778 * 89.51458 * 4 3 2 14 14 C 1.50701 * 109.46871 * 90.00049 * 13 4 3 15 15 N 1.29029 * 124.91734 * 90.28517 * 14 13 4 16 16 C 1.31787 * 117.12248 * 180.22561 * 15 14 13 17 17 C 1.50691 * 122.74693 * 179.74917 * 16 15 14 18 18 C 1.52998 * 109.47027 * 254.70750 * 17 16 15 19 19 C 1.53000 * 109.47053 * 134.71134 * 17 16 15 20 20 C 1.52999 * 109.47449 * 14.70806 * 17 16 15 21 21 C 1.33635 * 114.49742 * 359.47956 * 16 15 14 22 22 S 1.70978 * 124.91331 * 269.97369 * 14 13 4 23 23 H 1.08997 * 109.46837 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.46783 * 299.99749 * 1 2 3 25 25 H 1.09001 * 109.46862 * 60.00250 * 1 2 3 26 26 H 1.08996 * 109.47299 * 240.00152 * 2 1 3 27 27 H 1.09001 * 109.46862 * 119.99750 * 2 1 3 28 28 H 1.08996 * 109.47296 * 60.00565 * 3 2 1 29 29 H 1.08993 * 109.47021 * 299.99756 * 3 2 1 30 30 H 0.97005 * 120.00172 * 179.97438 * 8 7 5 31 31 H 1.09000 * 109.47375 * 329.99802 * 13 4 3 32 32 H 1.08998 * 109.47069 * 209.99927 * 13 4 3 33 33 H 1.09002 * 109.47466 * 299.99818 * 18 17 16 34 34 H 1.08998 * 109.47475 * 59.99929 * 18 17 16 35 35 H 1.09002 * 109.47460 * 180.02562 * 18 17 16 36 36 H 1.08998 * 109.47399 * 179.97438 * 19 17 16 37 37 H 1.09001 * 109.46840 * 299.99481 * 19 17 16 38 38 H 1.08998 * 109.47630 * 59.99720 * 19 17 16 39 39 H 1.08997 * 109.46962 * 300.00301 * 20 17 16 40 40 H 1.09001 * 109.47255 * 60.00022 * 20 17 16 41 41 H 1.08998 * 109.47153 * 179.97438 * 20 17 16 42 42 H 1.08003 * 126.03916 * 180.26895 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1893 1.4528 1.1867 6 1 3.7868 1.9820 2.0377 7 6 5.4002 0.7831 1.2952 8 7 5.6789 -0.2095 0.4769 9 14 6.6343 1.2903 2.6025 10 1 6.0206 1.1420 3.9466 11 1 7.8375 0.4247 2.5100 12 1 7.0257 2.7070 2.3906 13 6 4.2380 1.4316 -1.2679 14 6 4.4893 2.8487 -1.7150 15 7 5.5310 3.5459 -1.4090 16 6 5.5914 4.7747 -1.8814 17 6 6.7461 5.7008 -1.5987 18 6 6.3163 6.7541 -0.5756 19 6 7.1737 6.3930 -2.8944 20 6 7.9205 4.8956 -1.0390 21 6 4.5475 5.1302 -2.6361 22 16 3.4389 3.7626 -2.7073 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 6.5253 -0.6773 0.5525 31 1 3.6492 0.9112 -2.0233 32 1 5.1903 0.9190 -1.1327 33 1 5.4797 7.3279 -0.9743 34 1 6.0116 6.2611 0.3475 35 1 7.1514 7.4243 -0.3714 36 1 8.0086 7.0632 -2.6899 37 1 7.4799 5.6426 -3.6232 38 1 6.3371 6.9667 -3.2931 39 1 7.6158 4.4025 -0.1159 40 1 8.2267 4.1452 -1.7678 41 1 8.7558 5.5654 -0.8349 42 1 4.4079 6.0869 -3.1176 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094936340.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:49 Heat of formation + Delta-G solvation = 41.161345 kcal Electronic energy + Delta-G solvation = -20843.799529 eV Core-core repulsion = 17950.670080 eV Total energy + Delta-G solvation = -2893.129449 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -39.57636 -36.52031 -35.45004 -32.91813 -31.04055 -29.45437 -27.57343 -27.08303 -26.15619 -25.58446 -23.59826 -22.04162 -20.57150 -19.51005 -18.39491 -17.06151 -16.40260 -15.25117 -14.83602 -14.53694 -14.26177 -13.96684 -13.69255 -13.56718 -13.31743 -12.98660 -12.69718 -12.35003 -12.04588 -11.88047 -11.79487 -11.43731 -11.41197 -11.36872 -10.99309 -10.78356 -10.67779 -10.65548 -10.61125 -10.34984 -10.33748 -10.11237 -10.00137 -9.72644 -8.73328 -8.65543 -8.51040 -8.03422 -6.75624 -5.86627 -3.36736 1.46567 2.14149 2.51778 3.40041 3.45858 3.52149 3.57648 4.49432 4.67637 5.05752 5.22320 5.27819 5.39054 5.45901 5.59839 5.72217 5.72908 5.79331 5.81115 5.89447 5.91859 6.06099 6.09048 6.13616 6.21205 6.23148 6.29232 6.34745 6.46173 6.53492 6.54886 6.58561 6.66325 6.77517 6.97777 7.00683 7.21350 7.48744 7.78308 8.40190 8.69568 9.07124 9.72981 10.25304 11.15666 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.013751 B = 0.007393 C = 0.005296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.695216 B = 3786.468803 C = 5285.258174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.138 4.138 3 C 0.146 3.854 4 N -0.564 5.564 5 C -0.258 4.258 6 H 0.061 0.939 7 C 0.025 3.975 8 N -0.880 5.880 9 Si 0.898 3.102 10 H -0.283 1.283 11 H -0.290 1.290 12 H -0.279 1.279 13 C 0.202 3.798 14 C 0.096 3.904 15 N -0.465 5.465 16 C 0.089 3.911 17 C 0.006 3.994 18 C -0.135 4.135 19 C -0.135 4.135 20 C -0.128 4.128 21 C -0.288 4.288 22 S 0.038 5.962 23 H 0.043 0.957 24 H 0.047 0.953 25 H 0.045 0.955 26 H 0.052 0.948 27 H 0.065 0.935 28 H 0.045 0.955 29 H 0.034 0.966 30 H 0.258 0.742 31 H 0.049 0.951 32 H 0.131 0.869 33 H 0.052 0.948 34 H 0.059 0.941 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.055 0.945 38 H 0.054 0.946 39 H 0.067 0.933 40 H 0.055 0.945 41 H 0.046 0.954 42 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.006 8.950 -6.398 11.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.178 4.178 3 C 0.020 3.980 4 N -0.283 5.283 5 C -0.387 4.387 6 H 0.079 0.921 7 C -0.176 4.176 8 N -0.522 5.522 9 Si 0.727 3.273 10 H -0.210 1.210 11 H -0.216 1.216 12 H -0.205 1.205 13 C 0.071 3.929 14 C -0.186 4.186 15 N -0.179 5.179 16 C -0.044 4.044 17 C 0.003 3.997 18 C -0.193 4.193 19 C -0.193 4.193 20 C -0.186 4.186 21 C -0.428 4.428 22 S 0.293 5.707 23 H 0.063 0.937 24 H 0.066 0.934 25 H 0.064 0.936 26 H 0.071 0.929 27 H 0.084 0.916 28 H 0.063 0.937 29 H 0.052 0.948 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.148 0.852 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.087 0.913 40 H 0.074 0.926 41 H 0.066 0.934 42 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -2.461 8.353 -6.539 10.890 hybrid contribution 1.234 0.970 0.787 1.756 sum -1.227 9.324 -5.752 11.024 Atomic orbital electron populations 1.21755 0.97624 1.00426 1.00750 1.22047 0.93154 1.00319 1.02320 1.21004 0.84586 0.93889 0.98544 1.43782 0.99557 1.83287 1.01645 1.18939 1.03414 1.26474 0.89913 0.92087 1.24976 1.00083 0.94580 0.98009 1.69896 1.23705 1.18857 1.39742 0.86452 0.80963 0.78745 0.81157 1.20972 1.21580 1.20475 1.19940 1.02104 0.84208 0.86693 1.29569 0.90242 1.04056 0.94745 1.66147 1.23769 1.04870 1.23074 1.20166 0.96045 0.91799 0.96357 1.19094 0.92062 0.92948 0.95639 1.21850 1.00805 0.97617 0.98980 1.21886 1.00892 1.00024 0.96470 1.21686 0.95568 0.99001 1.02319 1.26323 0.99783 1.03927 1.12733 1.83792 1.28709 1.07774 1.50454 0.93744 0.93386 0.93626 0.92904 0.91610 0.93677 0.94783 0.93221 0.93305 0.85184 0.92845 0.92188 0.92403 0.92344 0.92544 0.92725 0.91348 0.92605 0.93448 0.82280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 9.91 37.16 0.37 -1.84 16 2 C -0.14 -2.62 6.26 -26.73 -0.17 -2.79 16 3 C 0.15 2.99 5.67 -4.04 -0.02 2.97 16 4 N -0.56 -13.59 2.44 -174.61 -0.43 -14.02 16 5 C -0.26 -6.91 9.48 -15.06 -0.14 -7.06 16 6 H 0.06 1.66 7.93 -52.49 -0.42 1.25 16 7 C 0.02 0.67 4.94 -17.43 -0.09 0.58 16 8 N -0.88 -24.51 11.34 55.49 0.63 -23.88 16 9 Si 0.90 21.94 29.61 -169.99 -5.03 16.90 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 13 C 0.20 4.68 5.87 -5.19 -0.03 4.65 16 14 C 0.10 2.06 6.97 -13.45 -0.09 1.97 16 15 N -0.47 -10.25 9.55 -8.06 -0.08 -10.33 16 16 C 0.09 1.66 5.41 -84.23 -0.46 1.20 16 17 C 0.01 0.09 0.90 -155.67 -0.14 -0.06 16 18 C -0.13 -1.89 8.43 37.16 0.31 -1.58 16 19 C -0.13 -1.67 8.13 37.16 0.30 -1.37 16 20 C -0.13 -2.10 7.91 37.16 0.29 -1.81 16 21 C -0.29 -4.83 10.40 29.12 0.30 -4.53 16 22 S 0.04 0.67 23.18 -107.50 -2.49 -1.83 16 23 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 28 H 0.04 0.93 8.03 -51.93 -0.42 0.51 16 29 H 0.03 0.65 8.08 -51.93 -0.42 0.23 16 30 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 31 H 0.05 1.05 8.07 -51.93 -0.42 0.63 16 32 H 0.13 3.45 5.33 -51.93 -0.28 3.18 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.05 0.61 7.15 -51.93 -0.37 0.24 16 39 H 0.07 1.33 7.97 -51.93 -0.41 0.91 16 40 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 41 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.16 2.21 7.31 -52.48 -0.38 1.82 16 LS Contribution 353.62 15.07 5.33 5.33 Total: -1.00 -28.20 353.62 -8.95 -37.15 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -7.33 Total: 0.34 kcal Atomic # 6 Polarization: -10.10 SS G_CDS: 0.44 Total: -9.66 kcal Atomic # 7 Polarization: -48.36 SS G_CDS: 0.13 Total: -48.23 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.03 Total: 16.90 kcal Atomic # 16 Polarization: 0.67 SS G_CDS: -2.49 Total: -1.83 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -28.20 -8.95 -37.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094936340.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.315 kcal (2) G-P(sol) polarization free energy of solvation -28.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds