Wall clock time and date at job start Tue Mar 31 2020 05:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46704 * 2 1 4 4 N 1.46499 * 109.46703 * 179.97438 * 3 2 1 5 5 C 1.36936 * 120.00694 * 269.51376 * 4 3 2 6 6 H 1.07999 * 119.99666 * 326.08722 * 5 4 3 7 7 C 1.38808 * 120.00452 * 146.08783 * 5 4 3 8 8 N 1.31618 * 119.99791 * 336.60396 * 7 5 4 9 9 Si 1.86798 * 120.00168 * 156.60817 * 7 5 4 10 10 H 1.48502 * 109.47001 * 59.99879 * 9 7 5 11 11 H 1.48505 * 109.47174 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.46854 * 299.99772 * 9 7 5 13 13 C 1.46508 * 119.99778 * 89.51458 * 4 3 2 14 14 C 1.50701 * 109.46871 * 90.00049 * 13 4 3 15 15 N 1.29029 * 124.91734 * 90.28517 * 14 13 4 16 16 C 1.31787 * 117.12248 * 180.22561 * 15 14 13 17 17 C 1.50691 * 122.74693 * 179.74917 * 16 15 14 18 18 C 1.52998 * 109.47027 * 254.70750 * 17 16 15 19 19 C 1.53000 * 109.47053 * 134.71134 * 17 16 15 20 20 C 1.52999 * 109.47449 * 14.70806 * 17 16 15 21 21 C 1.33635 * 114.49742 * 359.47956 * 16 15 14 22 22 S 1.70978 * 124.91331 * 269.97369 * 14 13 4 23 23 H 1.08997 * 109.46837 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.46783 * 299.99749 * 1 2 3 25 25 H 1.09001 * 109.46862 * 60.00250 * 1 2 3 26 26 H 1.08996 * 109.47299 * 240.00152 * 2 1 3 27 27 H 1.09001 * 109.46862 * 119.99750 * 2 1 3 28 28 H 1.08996 * 109.47296 * 60.00565 * 3 2 1 29 29 H 1.08993 * 109.47021 * 299.99756 * 3 2 1 30 30 H 0.97005 * 120.00172 * 179.97438 * 8 7 5 31 31 H 1.09000 * 109.47375 * 329.99802 * 13 4 3 32 32 H 1.08998 * 109.47069 * 209.99927 * 13 4 3 33 33 H 1.09002 * 109.47466 * 299.99818 * 18 17 16 34 34 H 1.08998 * 109.47475 * 59.99929 * 18 17 16 35 35 H 1.09002 * 109.47460 * 180.02562 * 18 17 16 36 36 H 1.08998 * 109.47399 * 179.97438 * 19 17 16 37 37 H 1.09001 * 109.46840 * 299.99481 * 19 17 16 38 38 H 1.08998 * 109.47630 * 59.99720 * 19 17 16 39 39 H 1.08997 * 109.46962 * 300.00301 * 20 17 16 40 40 H 1.09001 * 109.47255 * 60.00022 * 20 17 16 41 41 H 1.08998 * 109.47153 * 179.97438 * 20 17 16 42 42 H 1.08003 * 126.03916 * 180.26895 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1893 1.4528 1.1867 6 1 3.7868 1.9820 2.0377 7 6 5.4002 0.7831 1.2952 8 7 5.6789 -0.2095 0.4769 9 14 6.6343 1.2903 2.6025 10 1 6.0206 1.1420 3.9466 11 1 7.8375 0.4247 2.5100 12 1 7.0257 2.7070 2.3906 13 6 4.2380 1.4316 -1.2679 14 6 4.4893 2.8487 -1.7150 15 7 5.5310 3.5459 -1.4090 16 6 5.5914 4.7747 -1.8814 17 6 6.7461 5.7008 -1.5987 18 6 6.3163 6.7541 -0.5756 19 6 7.1737 6.3930 -2.8944 20 6 7.9205 4.8956 -1.0390 21 6 4.5475 5.1302 -2.6361 22 16 3.4389 3.7626 -2.7073 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 6.5253 -0.6773 0.5525 31 1 3.6492 0.9112 -2.0233 32 1 5.1903 0.9190 -1.1327 33 1 5.4797 7.3279 -0.9743 34 1 6.0116 6.2611 0.3475 35 1 7.1514 7.4243 -0.3714 36 1 8.0086 7.0632 -2.6899 37 1 7.4799 5.6426 -3.6232 38 1 6.3371 6.9667 -3.2931 39 1 7.6158 4.4025 -0.1159 40 1 8.2267 4.1452 -1.7678 41 1 8.7558 5.5654 -0.8349 42 1 4.4079 6.0869 -3.1176 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094936340.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:48 Heat of formation + Delta-G solvation = 26.921370 kcal Electronic energy + Delta-G solvation = -20844.417020 eV Core-core repulsion = 17950.670080 eV Total energy + Delta-G solvation = -2893.746940 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.01282 -38.19254 -36.83099 -34.61551 -32.86013 -30.99199 -29.00966 -28.14420 -27.56553 -27.32634 -25.13254 -23.68776 -22.08587 -21.09449 -19.83210 -18.84077 -17.95389 -16.89211 -16.45680 -16.16031 -15.86914 -15.55667 -15.09941 -14.91524 -14.78668 -14.44921 -14.17181 -13.85189 -13.32016 -13.15697 -13.13270 -13.05790 -12.82586 -12.75320 -12.58410 -12.56980 -12.23783 -12.21494 -12.00933 -11.88355 -11.79585 -11.74742 -11.61736 -11.34256 -10.56720 -10.26646 -10.11634 -9.46199 -8.70229 -7.89954 -5.43475 -0.01171 0.69349 1.02167 1.39292 1.45184 1.50883 2.08142 2.49163 3.21322 3.38385 3.70080 3.90142 4.05913 4.08996 4.26451 4.38836 4.41911 4.48447 4.61716 4.65653 4.74776 4.76376 4.79777 4.86891 4.88388 4.93467 4.98181 4.99906 5.11485 5.17961 5.18784 5.28387 5.41468 5.45803 5.47233 5.52901 5.53851 5.59462 5.74048 6.39928 7.08546 7.21042 7.78167 8.27159 9.08549 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.013751 B = 0.007393 C = 0.005296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.695216 B = 3786.468803 C = 5285.258174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.130 4.130 3 C 0.145 3.855 4 N -0.579 5.579 5 C -0.262 4.262 6 H 0.050 0.950 7 C -0.015 4.015 8 N -0.904 5.904 9 Si 0.942 3.058 10 H -0.275 1.275 11 H -0.290 1.290 12 H -0.290 1.290 13 C 0.209 3.791 14 C 0.053 3.947 15 N -0.498 5.498 16 C 0.062 3.938 17 C 0.002 3.998 18 C -0.130 4.130 19 C -0.128 4.128 20 C -0.123 4.123 21 C -0.269 4.269 22 S 0.099 5.901 23 H 0.057 0.943 24 H 0.055 0.945 25 H 0.063 0.937 26 H 0.042 0.958 27 H 0.033 0.967 28 H 0.041 0.959 29 H 0.053 0.947 30 H 0.253 0.747 31 H 0.058 0.942 32 H 0.093 0.907 33 H 0.069 0.931 34 H 0.027 0.973 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.047 0.953 38 H 0.072 0.928 39 H 0.026 0.974 40 H 0.040 0.960 41 H 0.076 0.924 42 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.082 11.651 -7.922 14.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.170 4.170 3 C 0.020 3.980 4 N -0.299 5.299 5 C -0.392 4.392 6 H 0.067 0.933 7 C -0.213 4.213 8 N -0.547 5.547 9 Si 0.771 3.229 10 H -0.200 1.200 11 H -0.216 1.216 12 H -0.216 1.216 13 C 0.078 3.922 14 C -0.228 4.228 15 N -0.213 5.213 16 C -0.070 4.070 17 C -0.001 4.001 18 C -0.188 4.188 19 C -0.185 4.185 20 C -0.181 4.181 21 C -0.408 4.408 22 S 0.354 5.646 23 H 0.077 0.923 24 H 0.074 0.926 25 H 0.082 0.918 26 H 0.060 0.940 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.076 0.924 32 H 0.110 0.890 33 H 0.088 0.912 34 H 0.046 0.954 35 H 0.102 0.898 36 H 0.099 0.901 37 H 0.067 0.933 38 H 0.091 0.909 39 H 0.045 0.955 40 H 0.059 0.941 41 H 0.095 0.905 42 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -3.556 11.055 -8.062 14.137 hybrid contribution 1.525 0.240 1.144 1.921 sum -2.031 11.295 -6.918 13.400 Atomic orbital electron populations 1.21663 0.94050 1.01814 1.02008 1.21903 0.96203 0.98667 1.00224 1.21113 0.82788 0.94955 0.99168 1.43898 1.00865 1.84025 1.01106 1.19003 1.03814 1.25606 0.90793 0.93258 1.25448 1.01305 0.94919 0.99659 1.70004 1.23643 1.19914 1.41182 0.85738 0.79528 0.77536 0.80058 1.20028 1.21585 1.21646 1.19558 1.00347 0.85608 0.86654 1.28911 0.92262 1.03981 0.97607 1.66130 1.24765 1.06680 1.23716 1.20657 0.97956 0.91273 0.97085 1.19277 0.90414 0.92677 0.97693 1.21824 1.02424 0.97375 0.97128 1.21841 1.02432 0.99983 0.94251 1.21625 0.97297 0.99251 0.99898 1.26842 0.98346 1.04818 1.10843 1.83412 1.26655 1.06680 1.47883 0.92349 0.92630 0.91811 0.93952 0.94761 0.94020 0.92912 0.93811 0.92361 0.89009 0.91227 0.95360 0.89817 0.90051 0.93338 0.90879 0.95495 0.94101 0.90528 0.78413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.85 9.91 71.98 0.71 -3.14 16 2 C -0.13 -4.94 6.26 30.60 0.19 -4.75 16 3 C 0.14 5.95 5.67 86.38 0.49 6.44 16 4 N -0.58 -28.70 2.44 -706.34 -1.72 -30.42 16 5 C -0.26 -14.59 9.48 84.03 0.80 -13.79 16 6 H 0.05 2.80 7.93 -2.91 -0.02 2.78 16 7 C -0.01 -0.83 4.94 84.86 0.42 -0.41 16 8 N -0.90 -52.80 11.34 21.65 0.25 -52.56 16 9 Si 0.94 46.90 29.61 68.60 2.03 48.93 16 10 H -0.27 -13.12 7.11 99.48 0.71 -12.41 16 11 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 12 H -0.29 -14.77 7.11 99.48 0.71 -14.06 16 13 C 0.21 10.02 5.87 85.63 0.50 10.52 16 14 C 0.05 2.30 6.97 88.52 0.62 2.92 16 15 N -0.50 -22.28 9.55 -179.41 -1.71 -23.99 16 16 C 0.06 2.23 5.41 41.52 0.22 2.45 16 17 C 0.00 0.07 0.90 -52.93 -0.05 0.02 16 18 C -0.13 -3.34 8.43 71.98 0.61 -2.73 16 19 C -0.13 -2.67 8.13 71.98 0.59 -2.09 16 20 C -0.12 -4.03 7.91 71.98 0.57 -3.46 16 21 C -0.27 -8.14 10.40 66.77 0.69 -7.44 16 22 S 0.10 3.26 23.18 -56.49 -1.31 1.95 16 23 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.04 1.72 8.03 -2.39 -0.02 1.70 16 29 H 0.05 1.94 8.08 -2.39 -0.02 1.92 16 30 H 0.25 14.42 8.31 -92.70 -0.77 13.65 16 31 H 0.06 2.56 8.07 -2.39 -0.02 2.54 16 32 H 0.09 5.16 5.33 -2.39 -0.01 5.14 16 33 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.07 1.27 7.15 -2.39 -0.02 1.25 16 39 H 0.03 1.07 7.97 -2.39 -0.02 1.05 16 40 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.20 4.37 7.31 -2.91 -0.02 4.35 16 Total: -1.00 -64.69 353.62 4.86 -59.83 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: 0.97 Total: 11.73 kcal Atomic # 6 Polarization: -21.84 SS G_CDS: 6.36 Total: -15.47 kcal Atomic # 7 Polarization: -103.78 SS G_CDS: -3.19 Total: -106.97 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.03 Total: 48.93 kcal Atomic # 16 Polarization: 3.26 SS G_CDS: -1.31 Total: 1.95 kcal Total: -64.69 4.86 -59.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094936340.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.749 kcal (2) G-P(sol) polarization free energy of solvation -64.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds