Wall clock time and date at job start Tue Mar 31 2020 05:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42893 * 113.99622 * 2 1 4 4 C 1.53008 * 109.47006 * 180.02562 * 3 2 1 5 5 C 1.52993 * 109.47513 * 184.92913 * 4 3 2 6 6 C 1.50707 * 112.84581 * 306.03332 * 5 4 3 7 7 O 1.20828 * 119.99353 * 122.80938 * 6 5 4 8 8 O 1.34225 * 120.00272 * 302.81408 * 6 5 4 9 9 C 1.45203 * 116.99842 * 177.23677 * 8 6 5 10 10 C 1.52996 * 109.46782 * 184.68283 * 9 8 6 11 11 C 1.50706 * 115.56325 * 268.19320 * 10 9 8 12 12 H 1.08000 * 119.99559 * 140.82787 * 11 10 9 13 13 C 1.37876 * 119.99966 * 320.83212 * 11 10 9 14 14 N 1.31514 * 119.99996 * 347.93496 * 13 11 10 15 15 Si 1.86801 * 119.99822 * 167.93351 * 13 11 10 16 16 H 1.48488 * 109.47145 * 60.00086 * 15 13 11 17 17 H 1.48494 * 109.46896 * 180.02562 * 15 13 11 18 18 H 1.48507 * 109.47171 * 300.00052 * 15 13 11 19 19 C 1.53007 * 117.50162 * 53.88673 * 10 9 8 20 20 C 1.53007 * 60.03047 * 107.47854 * 19 10 9 21 21 C 1.53779 * 113.61780 * 77.23439 * 5 4 3 22 22 C 1.53954 * 87.01984 * 89.22808 * 21 5 4 23 23 C 1.53783 * 113.61450 * 174.84623 * 5 4 3 24 24 H 1.08991 * 109.47226 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46855 * 300.00147 * 1 2 3 26 26 H 1.09002 * 109.46832 * 59.99901 * 1 2 3 27 27 H 1.09003 * 109.47594 * 60.00677 * 3 2 1 28 28 H 1.08994 * 109.47799 * 299.99722 * 3 2 1 29 29 H 1.09001 * 109.46777 * 64.91900 * 4 3 2 30 30 H 1.09008 * 109.46896 * 304.92886 * 4 3 2 31 31 H 1.08997 * 109.47056 * 64.68385 * 9 8 6 32 32 H 1.08997 * 109.47123 * 304.68171 * 9 8 6 33 33 H 0.96996 * 120.00026 * 185.02328 * 14 13 11 34 34 H 1.08993 * 117.49875 * 214.97667 * 19 10 9 35 35 H 1.08996 * 117.49507 * 359.97438 * 19 10 9 36 36 H 1.09000 * 117.49924 * 107.50688 * 20 19 10 37 37 H 1.09001 * 117.49467 * 252.52244 * 20 19 10 38 38 H 1.08997 * 113.61440 * 203.75198 * 21 5 4 39 39 H 1.08997 * 113.61198 * 334.64786 * 21 5 4 40 40 H 1.08994 * 113.53879 * 270.81024 * 22 21 5 41 41 H 1.09002 * 113.66335 * 139.93220 * 22 21 5 42 42 H 1.08993 * 113.61618 * 25.33842 * 23 5 4 43 43 H 1.09004 * 113.61408 * 156.25019 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 6 4.1574 2.5770 0.1233 6 6 3.6560 3.5372 -0.9245 7 8 3.1316 4.5738 -0.5923 8 8 3.7920 3.2408 -2.2265 9 6 3.2312 4.1825 -3.1790 10 6 3.3783 3.6236 -4.5956 11 6 4.6326 4.0274 -5.3270 12 1 5.1491 3.3113 -5.9489 13 6 5.1206 5.3108 -5.2020 14 7 4.3796 6.2449 -4.6468 15 14 6.8341 5.7229 -5.8212 16 1 6.9128 5.4495 -7.2786 17 1 7.1191 7.1585 -5.5702 18 1 7.8328 4.8881 -5.1063 19 6 2.8242 2.2227 -4.8635 20 6 2.1021 3.4502 -5.4230 21 6 4.1147 3.1460 1.5513 22 6 5.4751 2.4620 1.7784 23 6 5.6892 2.5576 0.2585 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.6887 1.8464 0.8900 28 1 1.6887 1.8464 -0.8899 29 1 3.8629 0.7219 -0.9317 30 1 3.8516 0.5692 0.8417 31 1 3.7612 5.1321 -3.1062 32 1 2.1753 4.3378 -2.9575 33 1 4.6927 7.1627 -4.6244 34 1 3.3669 1.5933 -5.5687 35 1 2.3553 1.6992 -4.0304 36 1 2.1697 3.6282 -6.4962 37 1 1.1583 3.7343 -4.9577 38 1 4.1614 4.2343 1.5893 39 1 3.3107 2.7343 2.1614 40 1 5.3921 1.4386 2.1441 41 1 6.1762 3.0637 2.3568 42 1 6.1545 1.6717 -0.1735 43 1 6.1672 3.4849 -0.0576 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121541293.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:20 Heat of formation + Delta-G solvation = -94.186473 kcal Electronic energy + Delta-G solvation = -23408.889698 eV Core-core repulsion = 20034.845506 eV Total energy + Delta-G solvation = -3374.044193 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.61197 -38.41034 -37.63124 -36.58875 -35.04290 -32.26253 -31.59744 -27.55054 -26.52114 -25.80445 -25.51291 -24.90105 -22.75166 -21.38177 -20.91406 -19.18174 -18.36739 -16.96651 -16.67657 -16.48410 -16.09636 -15.67178 -15.32459 -15.07247 -14.79765 -14.55147 -13.96579 -13.51307 -13.28832 -12.98086 -12.47696 -12.36752 -11.97855 -11.83790 -11.70861 -11.63726 -11.34498 -11.12474 -11.02873 -10.98178 -10.85295 -10.53853 -10.50461 -10.33216 -10.28288 -9.89471 -9.68890 -9.64489 -9.30599 -8.93041 -8.80755 -8.17234 -6.13180 -4.16685 2.82458 3.25582 3.31578 3.34379 3.40047 3.65194 4.31725 4.40053 4.56813 4.75071 4.83333 4.92765 5.08245 5.13354 5.24813 5.30781 5.38352 5.43047 5.51988 5.59328 5.64954 5.67648 5.80428 5.86869 5.96227 5.98673 6.02784 6.07811 6.20406 6.29023 6.40461 6.40759 6.67548 6.72925 6.78698 6.96934 7.09105 7.27695 7.42621 7.54367 7.88997 8.32562 8.54881 8.78940 9.42525 10.89729 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.016049 B = 0.005715 C = 0.004684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.215229 B = 4898.197346 C = 5976.934625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.390 6.390 3 C 0.059 3.941 4 C -0.088 4.088 5 C -0.079 4.079 6 C 0.465 3.535 7 O -0.519 6.519 8 O -0.345 6.345 9 C 0.095 3.905 10 C 0.048 3.952 11 C -0.484 4.484 12 H 0.065 0.935 13 C 0.066 3.934 14 N -0.883 5.883 15 Si 0.898 3.102 16 H -0.275 1.275 17 H -0.285 1.285 18 H -0.274 1.274 19 C -0.195 4.195 20 C -0.193 4.193 21 C -0.117 4.117 22 C -0.140 4.140 23 C -0.117 4.117 24 H 0.085 0.915 25 H 0.039 0.961 26 H 0.042 0.958 27 H 0.051 0.949 28 H 0.050 0.950 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.125 0.875 32 H 0.034 0.966 33 H 0.266 0.734 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.065 0.935 38 H 0.095 0.905 39 H 0.073 0.927 40 H 0.084 0.916 41 H 0.073 0.927 42 H 0.082 0.918 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.105 -9.028 11.842 15.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.309 6.309 3 C -0.017 4.017 4 C -0.125 4.125 5 C -0.080 4.080 6 C 0.308 3.692 7 O -0.409 6.409 8 O -0.260 6.260 9 C 0.023 3.977 10 C 0.048 3.952 11 C -0.521 4.521 12 H 0.083 0.917 13 C -0.137 4.137 14 N -0.521 5.521 15 Si 0.725 3.275 16 H -0.200 1.200 17 H -0.211 1.211 18 H -0.199 1.199 19 C -0.233 4.233 20 C -0.231 4.231 21 C -0.155 4.155 22 C -0.178 4.178 23 C -0.154 4.154 24 H 0.103 0.897 25 H 0.058 0.942 26 H 0.061 0.939 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.107 0.893 30 H 0.103 0.897 31 H 0.142 0.858 32 H 0.052 0.948 33 H 0.077 0.923 34 H 0.097 0.903 35 H 0.088 0.912 36 H 0.102 0.898 37 H 0.083 0.917 38 H 0.114 0.886 39 H 0.092 0.908 40 H 0.103 0.897 41 H 0.092 0.908 42 H 0.101 0.899 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.114 -8.671 11.978 14.938 hybrid contribution 0.320 0.737 -0.537 0.966 sum -1.794 -7.934 11.441 14.038 Atomic orbital electron populations 1.22733 0.81082 1.02554 1.00134 1.87826 1.19693 1.27931 1.95476 1.22546 0.93980 0.84603 1.00587 1.21219 0.92944 0.93697 1.04664 1.21807 0.98430 0.94476 0.93312 1.23190 0.76111 0.85918 0.84017 1.90603 1.41387 1.26128 1.82774 1.86466 1.71824 1.52323 1.15386 1.23251 0.96144 0.93540 0.84795 1.18900 0.93195 0.93019 0.90135 1.20536 1.07040 0.96743 1.27823 0.91699 1.25032 0.97679 0.96183 0.94767 1.69717 1.37154 1.01298 1.43915 0.86555 0.84343 0.77353 0.79280 1.20049 1.21098 1.19889 1.22754 1.06039 0.91984 1.02495 1.23032 0.96748 1.03432 0.99893 1.22996 0.97840 1.01759 0.92859 1.22888 0.97355 1.01166 0.96352 1.22900 0.92416 1.03776 0.96319 0.89657 0.94214 0.93904 0.93126 0.93130 0.89258 0.89733 0.85796 0.94788 0.92319 0.90334 0.91161 0.89833 0.91672 0.88639 0.90788 0.89728 0.90841 0.89921 0.89198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 101.05 1.11 1.45 16 2 O -0.39 -5.41 10.70 -35.23 -0.38 -5.78 16 3 C 0.06 0.84 5.51 37.16 0.20 1.04 16 4 C -0.09 -1.18 4.93 -26.73 -0.13 -1.31 16 5 C -0.08 -1.17 0.92 -154.85 -0.14 -1.31 16 6 C 0.46 9.34 5.74 36.01 0.21 9.54 16 7 O -0.52 -11.72 15.71 -18.75 -0.29 -12.02 16 8 O -0.34 -7.83 9.99 -39.24 -0.39 -8.23 16 9 C 0.09 2.40 5.24 37.16 0.19 2.59 16 10 C 0.05 1.22 2.03 -155.62 -0.32 0.90 16 11 C -0.48 -13.23 9.01 -34.44 -0.31 -13.54 16 12 H 0.06 1.75 7.84 -52.49 -0.41 1.33 16 13 C 0.07 1.78 5.14 -17.82 -0.09 1.69 16 14 N -0.88 -24.84 10.89 55.43 0.60 -24.23 16 15 Si 0.90 20.89 29.56 -169.99 -5.02 15.86 16 16 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 17 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 19 C -0.20 -4.33 9.75 -26.72 -0.26 -4.59 16 20 C -0.19 -4.44 9.89 -26.69 -0.26 -4.70 16 21 C -0.12 -1.48 6.80 -25.83 -0.18 -1.65 16 22 C -0.14 -1.45 7.74 -25.82 -0.20 -1.65 16 23 C -0.12 -1.52 7.22 -25.91 -0.19 -1.71 16 24 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.66 7.48 -51.93 -0.39 0.27 16 28 H 0.05 0.82 7.45 -51.93 -0.39 0.43 16 29 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.08 0.94 7.32 -51.92 -0.38 0.56 16 31 H 0.12 3.50 5.26 -51.93 -0.27 3.23 16 32 H 0.03 0.84 7.80 -51.93 -0.41 0.44 16 33 H 0.27 7.16 8.32 -40.82 -0.34 6.82 16 34 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 35 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 36 H 0.08 1.90 8.14 -51.93 -0.42 1.48 16 37 H 0.06 1.41 8.03 -51.93 -0.42 0.99 16 38 H 0.10 1.34 7.56 -51.93 -0.39 0.95 16 39 H 0.07 0.82 7.55 -51.93 -0.39 0.43 16 40 H 0.08 0.74 7.62 -51.93 -0.40 0.34 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.08 0.98 8.10 -51.93 -0.42 0.56 16 43 H 0.09 1.28 8.09 -51.93 -0.42 0.86 16 LS Contribution 352.66 15.07 5.31 5.31 Total: -1.00 -30.15 352.66 -7.73 -37.88 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -7.20 Total: 4.43 kcal Atomic # 6 Polarization: -12.88 SS G_CDS: -0.36 Total: -13.24 kcal Atomic # 7 Polarization: -24.84 SS G_CDS: 0.60 Total: -24.23 kcal Atomic # 8 Polarization: -24.96 SS G_CDS: -1.06 Total: -26.03 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.15 -7.73 -37.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121541293.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.302 kcal (2) G-P(sol) polarization free energy of solvation -30.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds