Wall clock time and date at job start Tue Mar 31 2020 05:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46902 * 109.47389 * 2 1 4 4 C 1.46894 * 111.00119 * 288.04693 * 3 2 1 5 5 C 1.50697 * 109.47236 * 160.35851 * 4 3 2 6 6 H 1.08004 * 120.00190 * 4.90458 * 5 4 3 7 7 C 1.37878 * 120.00227 * 184.89706 * 5 4 3 8 8 N 1.31507 * 120.00457 * 180.02562 * 7 5 4 9 9 Si 1.86804 * 119.99778 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.46933 * 90.00072 * 9 7 5 11 11 H 1.48499 * 109.47377 * 209.99731 * 9 7 5 12 12 H 1.48497 * 109.47269 * 329.99964 * 9 7 5 13 13 C 1.46902 * 111.00275 * 164.08650 * 3 2 1 14 14 C 1.50698 * 109.47358 * 293.95827 * 13 3 2 15 15 C 1.33642 * 126.03718 * 90.02243 * 14 13 3 16 16 N 1.31782 * 114.49627 * 180.02562 * 15 14 13 17 17 C 1.29019 * 117.12781 * 0.02562 * 16 15 14 18 18 C 1.50702 * 124.91490 * 180.02562 * 17 16 15 19 19 C 1.52997 * 109.47455 * 59.99914 * 18 17 16 20 20 C 1.52999 * 109.46994 * 179.97438 * 18 17 16 21 21 C 1.53004 * 109.46995 * 299.99709 * 18 17 16 22 22 S 1.70977 * 110.17021 * 359.97438 * 17 16 15 23 23 H 1.08998 * 109.47102 * 179.47352 * 1 2 3 24 24 H 1.09003 * 109.47355 * 299.47377 * 1 2 3 25 25 H 1.09009 * 109.46913 * 59.47232 * 1 2 3 26 26 H 1.08998 * 109.47537 * 239.99834 * 2 1 3 27 27 H 1.09001 * 109.46969 * 119.99731 * 2 1 3 28 28 H 1.08993 * 109.47297 * 280.36108 * 4 3 2 29 29 H 1.09006 * 109.47306 * 40.35983 * 4 3 2 30 30 H 0.96996 * 120.00667 * 179.97438 * 8 7 5 31 31 H 1.09000 * 109.47010 * 173.95555 * 13 3 2 32 32 H 1.08997 * 109.46667 * 53.95768 * 13 3 2 33 33 H 1.07999 * 122.75199 * 359.72952 * 15 14 13 34 34 H 1.09006 * 109.47232 * 59.99894 * 19 18 17 35 35 H 1.09000 * 109.47474 * 179.97438 * 19 18 17 36 36 H 1.09002 * 109.47215 * 300.00184 * 19 18 17 37 37 H 1.08996 * 109.47518 * 59.99980 * 20 18 17 38 38 H 1.09000 * 109.47152 * 180.02562 * 20 18 17 39 39 H 1.09006 * 109.47073 * 299.99727 * 20 18 17 40 40 H 1.08994 * 109.46726 * 60.00022 * 21 18 17 41 41 H 1.09000 * 109.46818 * 180.02562 * 21 18 17 42 42 H 1.08996 * 109.47110 * 299.99770 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7946 2.0229 -1.3039 5 6 1.8461 3.5207 -1.1459 6 1 2.1059 3.9545 -0.1915 7 6 1.5617 4.3375 -2.2197 8 7 1.6071 5.6445 -2.0820 9 14 1.1118 3.5873 -3.8703 10 1 -0.3592 3.3971 -3.9431 11 1 1.5481 4.4946 -4.9619 12 1 1.7887 2.2739 -4.0181 13 6 3.4386 1.4417 0.3760 14 6 3.5962 1.0057 1.8099 15 6 3.8058 -0.2445 2.2330 16 7 3.9092 -0.3687 3.5409 17 6 3.7979 0.7070 4.2446 18 6 3.8876 0.7676 5.7477 19 6 5.2572 0.2554 6.1980 20 6 3.7070 2.2144 6.2115 21 6 2.7902 -0.1054 6.3597 22 16 3.5355 2.0540 3.2248 23 1 -0.3633 -1.0276 -0.0094 24 1 -0.3634 0.5056 0.8947 25 1 -0.3633 0.5221 -0.8853 26 1 1.8933 -0.5138 -0.8899 27 1 1.8932 -0.5138 0.8900 28 1 2.5682 1.7045 -2.0025 29 1 0.8167 1.7314 -1.6871 30 1 1.4074 6.2191 -2.8375 31 1 3.8035 2.4627 0.2645 32 1 4.0126 0.7781 -0.2707 33 1 3.8794 -1.0850 1.5587 34 1 6.0391 0.8774 5.7620 35 1 5.3222 0.2997 7.2852 36 1 5.3863 -0.7752 5.8676 37 1 2.7315 2.5797 5.8907 38 1 3.7723 2.2583 7.2986 39 1 4.4892 2.8360 5.7755 40 1 2.9193 -1.1360 6.0292 41 1 2.8548 -0.0612 7.4468 42 1 1.8145 0.2595 6.0389 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127658036.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:29 Heat of formation + Delta-G solvation = 32.624403 kcal Electronic energy + Delta-G solvation = -20241.491173 eV Core-core repulsion = 17347.991535 eV Total energy + Delta-G solvation = -2893.499638 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.74528 -37.48576 -36.38137 -32.62126 -31.34010 -29.85893 -27.56848 -27.37692 -27.32046 -25.58922 -23.45712 -22.39028 -20.89025 -19.92673 -18.44051 -17.46571 -16.86469 -15.51796 -15.26318 -14.73583 -14.65075 -14.31870 -13.98842 -13.89209 -13.51328 -13.43100 -12.93425 -12.55225 -12.40465 -12.27159 -12.08771 -11.81240 -11.79675 -11.49293 -11.38512 -11.28571 -11.11430 -11.06166 -10.86678 -10.67868 -10.47781 -10.17805 -9.89508 -9.38165 -9.27757 -8.88457 -8.58946 -8.49438 -7.45416 -6.07586 -4.04795 1.00194 1.65238 2.14098 3.06667 3.25812 3.33800 3.35028 4.11025 4.39275 4.68963 4.75353 4.79644 4.95852 5.24948 5.30739 5.34374 5.43674 5.48967 5.53334 5.58386 5.62856 5.72771 5.75327 5.76233 5.84446 5.94805 5.97301 6.04593 6.13314 6.16610 6.17274 6.30281 6.42204 6.49453 6.67199 6.77867 6.86021 7.58185 7.83911 7.93712 7.98837 8.62376 9.01250 9.54095 11.05601 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.026036 B = 0.004283 C = 0.003967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.175919 B = 6536.322298 C = 7056.045204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.043 3.957 3 N -0.521 5.521 4 C 0.162 3.838 5 C -0.508 4.508 6 H 0.080 0.920 7 C 0.070 3.930 8 N -0.899 5.899 9 Si 0.872 3.128 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.269 1.269 13 C 0.132 3.868 14 C -0.191 4.191 15 C 0.019 3.981 16 N -0.472 5.472 17 C 0.029 3.971 18 C 0.014 3.986 19 C -0.132 4.132 20 C -0.155 4.155 21 C -0.133 4.133 22 S 0.159 5.841 23 H 0.047 0.953 24 H 0.059 0.941 25 H 0.057 0.943 26 H 0.023 0.977 27 H 0.066 0.934 28 H -0.011 1.011 29 H 0.030 0.970 30 H 0.264 0.736 31 H 0.099 0.901 32 H 0.044 0.956 33 H 0.166 0.834 34 H 0.055 0.945 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.634 -10.905 14.278 18.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.085 4.085 3 N -0.245 5.245 4 C 0.036 3.964 5 C -0.547 4.547 6 H 0.098 0.902 7 C -0.132 4.132 8 N -0.538 5.538 9 Si 0.700 3.300 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.193 1.193 13 C 0.002 3.998 14 C -0.313 4.313 15 C -0.133 4.133 16 N -0.185 5.185 17 C -0.249 4.249 18 C 0.010 3.990 19 C -0.191 4.191 20 C -0.213 4.213 21 C -0.191 4.191 22 S 0.415 5.585 23 H 0.066 0.934 24 H 0.078 0.922 25 H 0.076 0.924 26 H 0.041 0.959 27 H 0.084 0.916 28 H 0.007 0.993 29 H 0.048 0.952 30 H 0.074 0.926 31 H 0.117 0.883 32 H 0.062 0.938 33 H 0.183 0.817 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.280 -9.889 14.928 18.411 hybrid contribution 0.162 -1.488 -2.347 2.784 sum 4.442 -11.378 12.581 17.535 Atomic orbital electron populations 1.21733 0.95354 1.00105 1.02840 1.22136 0.96200 0.90643 0.99570 1.61998 1.14708 1.14661 1.33166 1.20237 0.95583 0.95996 0.84608 1.21015 1.46768 0.88128 0.98750 0.90208 1.24879 0.95138 0.94692 0.98473 1.69882 1.49623 1.02836 1.31451 0.86907 0.79256 0.79463 0.84399 1.20129 1.21166 1.19349 1.20399 0.90671 1.02285 0.86429 1.26149 1.07915 0.96232 1.01000 1.21554 1.04775 0.96368 0.90572 1.66100 1.16424 1.30340 1.05665 1.26939 1.05061 0.92331 1.00521 1.19129 0.97484 0.96847 0.85511 1.21820 0.94586 1.01936 1.00759 1.22027 1.02902 0.94257 1.02090 1.21820 0.97376 0.99974 0.99978 1.84161 1.65119 1.12485 0.96733 0.93427 0.92196 0.92359 0.95924 0.91596 0.99292 0.95195 0.92645 0.88305 0.93813 0.81682 0.92599 0.91977 0.91661 0.91629 0.91021 0.91781 0.91663 0.91992 0.92472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 9.98 37.15 0.37 -1.98 16 2 C 0.04 0.75 5.55 -3.83 -0.02 0.72 16 3 N -0.52 -10.70 4.37 -237.53 -1.04 -11.74 16 4 C 0.16 3.83 3.65 -4.98 -0.02 3.81 16 5 C -0.51 -14.16 9.17 -34.44 -0.32 -14.47 16 6 H 0.08 2.43 7.89 -52.48 -0.41 2.01 16 7 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 8 N -0.90 -27.19 13.96 55.43 0.77 -26.42 16 9 Si 0.87 21.22 27.37 -169.99 -4.65 16.56 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.27 -6.30 6.69 56.52 0.38 -5.92 16 13 C 0.13 2.46 5.32 -4.98 -0.03 2.43 16 14 C -0.19 -3.17 5.55 -35.92 -0.20 -3.37 16 15 C 0.02 0.29 9.63 -19.18 -0.18 0.10 16 16 N -0.47 -7.21 10.53 -11.86 -0.12 -7.34 16 17 C 0.03 0.41 5.78 -13.46 -0.08 0.33 16 18 C 0.01 0.15 0.99 -155.66 -0.15 0.00 16 19 C -0.13 -1.27 8.45 37.16 0.31 -0.95 16 20 C -0.15 -1.45 7.54 37.16 0.28 -1.17 16 21 C -0.13 -1.32 8.45 37.16 0.31 -1.01 16 22 S 0.16 2.43 21.57 -107.50 -2.32 0.11 16 23 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 25 H 0.06 1.03 6.52 -51.92 -0.34 0.69 16 26 H 0.02 0.38 8.05 -51.93 -0.42 -0.04 16 27 H 0.07 1.07 5.46 -51.93 -0.28 0.79 16 28 H -0.01 -0.25 7.40 -51.93 -0.38 -0.64 16 29 H 0.03 0.71 5.40 -51.93 -0.28 0.43 16 30 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 31 H 0.10 2.03 7.32 -51.93 -0.38 1.65 16 32 H 0.04 0.76 8.12 -51.93 -0.42 0.34 16 33 H 0.17 2.27 7.85 -52.49 -0.41 1.86 16 34 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.65 7.92 -51.93 -0.41 0.24 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.61 7.92 -51.93 -0.41 0.19 16 40 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 345.67 15.07 5.21 5.21 Total: -1.00 -30.28 345.67 -9.09 -39.37 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -7.12 Total: -2.08 kcal Atomic # 6 Polarization: -13.85 SS G_CDS: 0.18 Total: -13.67 kcal Atomic # 7 Polarization: -45.10 SS G_CDS: -0.39 Total: -45.49 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.65 Total: 16.56 kcal Atomic # 16 Polarization: 2.43 SS G_CDS: -2.32 Total: 0.11 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.28 -9.09 -39.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127658036.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.991 kcal (2) G-P(sol) polarization free energy of solvation -30.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds