Wall clock time and date at job start Tue Mar 31 2020 05:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 C 1.81400 * 102.99821 * 2 1 4 4 H 1.08994 * 109.63604 * 55.39747 * 3 2 1 5 5 C 1.54304 * 109.63211 * 294.99956 * 3 2 1 6 6 C 1.45890 * 112.18898 * 161.76493 * 5 3 2 7 7 C 1.54312 * 112.18640 * 61.12087 * 6 5 3 8 8 C 1.50442 * 108.48900 * 281.46676 * 7 6 5 9 9 N 1.48002 * 112.74265 * 93.78732 * 8 7 6 10 10 C 1.46901 * 110.99753 * 84.78018 * 9 8 7 11 11 C 1.53004 * 109.46762 * 164.14546 * 10 9 8 12 12 H 1.08996 * 109.47176 * 55.85333 * 11 10 9 13 13 C 1.47197 * 109.47424 * 295.85119 * 11 10 9 14 14 N 6.13584 * 131.50089 * 59.18013 * 2 1 3 15 15 C 1.53001 * 109.46718 * 175.85463 * 11 10 9 16 16 C 1.50700 * 109.46937 * 185.00153 * 15 11 10 17 17 H 1.08001 * 119.99991 * 359.97438 * 16 15 11 18 18 C 1.37883 * 119.99914 * 179.97438 * 16 15 11 19 19 N 1.31507 * 119.99911 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99748 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46881 * 90.00418 * 20 18 16 22 22 H 1.48504 * 109.46892 * 210.00214 * 20 18 16 23 23 H 1.48498 * 109.47362 * 329.99956 * 20 18 16 24 24 C 1.47929 * 114.67501 * 317.91748 * 9 8 7 25 25 H 1.08997 * 109.47711 * 60.00092 * 1 2 3 26 26 H 1.08998 * 109.47212 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47019 * 299.99885 * 1 2 3 28 28 H 1.08997 * 108.94121 * 41.06253 * 5 3 2 29 29 H 1.09007 * 108.86686 * 282.41213 * 5 3 2 30 30 H 1.08999 * 108.93241 * 300.42012 * 6 5 3 31 31 H 1.08997 * 108.86428 * 181.77142 * 6 5 3 32 32 H 1.09000 * 109.62776 * 161.76978 * 7 6 5 33 33 H 1.08993 * 109.63299 * 41.16597 * 7 6 5 34 34 H 1.08997 * 108.81477 * 214.59783 * 8 7 6 35 35 H 1.09001 * 108.81132 * 332.98283 * 8 7 6 36 36 H 1.08993 * 109.46939 * 284.14141 * 10 9 8 37 37 H 1.09004 * 109.47194 * 44.15103 * 10 9 8 38 38 H 1.08998 * 109.47372 * 304.99718 * 15 11 10 39 39 H 1.08995 * 109.47396 * 65.00271 * 15 11 10 40 40 H 0.97000 * 119.99940 * 179.97438 * 19 18 16 41 41 H 1.08997 * 108.85074 * 197.34684 * 24 9 8 42 42 H 1.08997 * 108.71487 * 79.10374 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2219 1.7675 0.0000 4 1 1.7363 2.2555 0.8450 5 6 1.7401 2.4108 -1.3172 6 6 1.6441 3.8632 -1.2182 7 6 3.0064 4.5173 -0.9063 8 6 3.2896 4.3531 0.5621 9 7 4.1014 3.1514 0.8573 10 6 5.5348 3.4335 0.7031 11 6 6.3478 2.3287 1.3810 12 1 6.0606 1.3614 0.9689 13 6 6.0836 2.3432 2.8290 14 7 5.8797 2.3544 3.9465 15 6 7.8385 2.5669 1.1321 16 6 8.6317 1.4151 1.6936 17 1 8.1235 0.5955 2.1797 18 6 10.0064 1.4077 1.5867 19 7 10.6252 2.4055 0.9944 20 14 10.9897 -0.0197 2.2834 21 1 11.1513 -1.0648 1.2409 22 1 12.3271 0.4630 2.7119 23 1 10.2724 -0.5918 3.4510 24 6 3.7130 1.9421 0.0989 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 0.7593 2.0078 -1.5697 29 1 2.4420 2.1560 -2.1113 30 1 0.9397 4.1179 -0.4263 31 1 1.2706 4.2569 -2.1635 32 1 2.9691 5.5778 -1.1558 33 1 3.7887 4.0288 -1.4870 34 1 3.8236 5.2342 0.9178 35 1 2.3425 4.2774 1.0963 36 1 5.7857 3.4709 -0.3569 37 1 5.7682 4.3924 1.1659 38 1 8.0201 2.6447 0.0602 39 1 8.1452 3.4916 1.6207 40 1 11.5923 2.4005 0.9195 41 1 4.1376 1.0667 0.5903 42 1 4.1262 2.0126 -0.9072 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134613145.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:04 Heat of formation + Delta-G solvation = 12.130782 kcal Electronic energy + Delta-G solvation = -20361.533602 eV Core-core repulsion = 17467.145294 eV Total energy + Delta-G solvation = -2894.388308 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.58167 -36.64701 -34.59988 -33.37756 -32.38582 -31.45522 -29.16257 -27.77576 -25.65890 -25.05086 -23.00278 -21.70182 -20.89912 -19.77990 -17.06969 -16.85048 -16.32919 -15.75063 -15.37071 -14.75115 -14.64913 -14.46285 -14.17317 -13.81021 -13.52198 -13.36811 -13.04567 -12.76892 -12.70019 -12.40759 -12.30887 -11.93555 -11.70944 -11.34806 -11.23726 -11.21032 -11.06961 -10.99339 -10.91759 -10.62560 -10.52765 -10.42954 -10.16443 -9.90079 -9.48966 -9.19342 -8.42938 -8.08752 -7.78836 -6.07036 -4.09747 1.51244 2.42426 3.31881 3.38518 3.43955 3.77718 3.87609 3.95577 4.35478 4.38279 4.44636 4.75599 4.87510 4.92400 4.94862 4.97623 5.00406 5.20384 5.31290 5.31853 5.36592 5.46031 5.57658 5.58431 5.65827 5.77690 5.81927 5.85650 5.88623 5.97984 5.99544 6.05248 6.19473 6.40588 6.52310 7.15307 7.20121 7.44989 7.55499 7.88630 8.26384 8.64669 8.95059 9.55707 11.03932 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.019567 B = 0.004205 C = 0.003850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.632558 B = 6656.597771 C = 7270.416307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 S -0.247 6.247 3 C -0.051 4.051 4 H 0.098 0.902 5 C -0.113 4.113 6 C -0.115 4.115 7 C -0.151 4.151 8 C 0.058 3.942 9 N -0.548 5.548 10 C 0.068 3.932 11 C 0.009 3.991 12 H 0.099 0.901 13 C 0.257 3.743 14 N -0.480 5.480 15 C 0.032 3.968 16 C -0.525 4.525 17 H 0.057 0.943 18 C 0.063 3.937 19 N -0.893 5.893 20 Si 0.890 3.110 21 H -0.279 1.279 22 H -0.286 1.286 23 H -0.273 1.273 24 C 0.079 3.921 25 H 0.075 0.925 26 H 0.099 0.901 27 H 0.075 0.925 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.053 0.947 37 H 0.081 0.919 38 H 0.037 0.963 39 H 0.026 0.974 40 H 0.262 0.738 41 H 0.086 0.914 42 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.303 2.399 -8.367 22.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 S -0.020 6.020 3 C -0.180 4.180 4 H 0.116 0.884 5 C -0.153 4.153 6 C -0.154 4.154 7 C -0.190 4.190 8 C -0.069 4.069 9 N -0.273 5.273 10 C -0.061 4.061 11 C -0.013 4.013 12 H 0.116 0.884 13 C -0.059 4.059 14 N -0.157 5.157 15 C -0.007 4.007 16 C -0.563 4.563 17 H 0.075 0.925 18 C -0.139 4.139 19 N -0.531 5.531 20 Si 0.718 3.282 21 H -0.205 1.205 22 H -0.212 1.212 23 H -0.198 1.198 24 C -0.049 4.049 25 H 0.094 0.906 26 H 0.118 0.882 27 H 0.094 0.906 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.072 0.928 37 H 0.099 0.901 38 H 0.055 0.945 39 H 0.044 0.956 40 H 0.072 0.928 41 H 0.104 0.896 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -19.859 1.464 -6.245 20.869 hybrid contribution 0.012 0.390 -0.907 0.987 sum -19.847 1.854 -7.152 21.178 Atomic orbital electron populations 1.23409 0.94924 1.06252 1.04704 1.87050 1.06525 1.10610 1.97814 1.22970 1.00340 0.93531 1.01130 0.88417 1.20924 1.01861 0.95948 0.96542 1.20564 0.97693 0.95239 1.01906 1.21965 0.97442 1.01110 0.98479 1.21927 0.98421 0.92403 0.94195 1.61806 1.04215 1.03434 1.57881 1.22261 0.85205 0.99082 0.99531 1.19247 0.99991 0.99723 0.82319 0.88363 1.28814 0.90367 0.91926 0.94832 1.80972 1.11763 1.09853 1.13129 1.19169 0.85029 0.98165 0.98343 1.21147 0.91626 1.05731 1.37778 0.92489 1.24941 0.97876 0.96012 0.95074 1.69935 1.09069 1.30945 1.43183 0.86604 0.79465 0.82565 0.79555 1.20468 1.21172 1.19803 1.21510 0.91897 0.94056 0.97458 0.90633 0.88235 0.90634 0.92040 0.90894 0.92100 0.91925 0.91203 0.91207 0.90963 0.91268 0.92846 0.90056 0.94521 0.95584 0.92839 0.89558 0.93423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.98 10.45 101.05 1.06 0.08 16 2 S -0.25 -2.82 21.49 -107.50 -2.31 -5.13 16 3 C -0.05 -0.54 2.34 -27.32 -0.06 -0.60 16 4 H 0.10 1.09 7.09 -51.93 -0.37 0.72 16 5 C -0.11 -0.98 4.69 -29.41 -0.14 -1.12 16 6 C -0.12 -0.90 5.30 -29.41 -0.16 -1.05 16 7 C -0.15 -1.33 5.60 -27.32 -0.15 -1.48 16 8 C 0.06 0.62 5.17 -4.49 -0.02 0.59 16 9 N -0.55 -7.25 4.34 -235.96 -1.02 -8.27 16 10 C 0.07 1.01 4.26 -3.82 -0.02 0.99 16 11 C 0.01 0.17 2.14 -93.41 -0.20 -0.03 16 12 H 0.10 1.79 6.64 -51.93 -0.34 1.44 16 13 C 0.26 5.51 13.65 -20.76 -0.28 5.22 16 14 N -0.48 -11.14 18.54 42.15 0.78 -10.36 16 15 C 0.03 0.74 4.42 -27.88 -0.12 0.61 16 16 C -0.52 -14.13 8.60 -34.44 -0.30 -14.42 16 17 H 0.06 1.54 7.59 -52.49 -0.40 1.14 16 18 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 19 N -0.89 -25.67 13.29 55.43 0.74 -24.93 16 20 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 24 C 0.08 0.99 4.08 -4.53 -0.02 0.97 16 25 H 0.07 0.50 6.82 -51.93 -0.35 0.15 16 26 H 0.10 0.69 8.14 -51.92 -0.42 0.26 16 27 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 28 H 0.06 0.48 6.37 -51.93 -0.33 0.15 16 29 H 0.07 0.67 7.51 -51.92 -0.39 0.28 16 30 H 0.06 0.46 7.52 -51.93 -0.39 0.07 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.69 6.84 -51.93 -0.36 0.33 16 34 H 0.07 0.76 7.55 -51.93 -0.39 0.37 16 35 H 0.07 0.71 6.58 -51.93 -0.34 0.37 16 36 H 0.05 0.73 7.81 -51.93 -0.41 0.33 16 37 H 0.08 1.20 7.64 -51.93 -0.40 0.80 16 38 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.26 7.16 8.31 -40.82 -0.34 6.83 16 41 H 0.09 1.26 6.43 -51.93 -0.33 0.92 16 42 H 0.05 0.58 6.35 -51.93 -0.33 0.25 16 LS Contribution 340.57 15.07 5.13 5.13 Total: -1.00 -30.17 340.57 -9.02 -39.19 By element: Atomic # 1 Polarization: 3.27 SS G_CDS: -6.80 Total: -3.53 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: -0.51 Total: -8.60 kcal Atomic # 7 Polarization: -44.06 SS G_CDS: 0.49 Total: -43.57 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: -2.82 SS G_CDS: -2.31 Total: -5.13 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.17 -9.02 -39.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134613145.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.317 kcal (2) G-P(sol) polarization free energy of solvation -30.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds