Wall clock time and date at job start Tue Mar 31 2020 05:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.81411 * 102.99718 * 2 1 4 4 H 1.09001 * 108.81295 * 306.52427 * 3 2 1 5 5 C 1.45875 * 108.84079 * 65.00170 * 3 2 1 6 6 C 1.54522 * 111.66927 * 182.31996 * 5 3 2 7 7 C 1.50546 * 108.96075 * 282.70558 * 6 5 3 8 8 C 1.54050 * 112.86231 * 91.61615 * 7 6 5 9 9 N 1.47942 * 113.41909 * 317.93237 * 8 7 6 10 10 C 1.46901 * 111.00380 * 192.12283 * 9 8 7 11 11 C 1.53005 * 109.46916 * 317.41002 * 10 9 8 12 12 H 1.08999 * 109.47015 * 54.99619 * 11 10 9 13 13 C 1.47205 * 109.46657 * 295.00011 * 11 10 9 14 14 N 6.89899 * 103.28160 * 331.93067 * 2 1 3 15 15 C 1.52996 * 109.47056 * 175.00138 * 11 10 9 16 16 C 1.50704 * 109.46904 * 184.99773 * 15 11 10 17 17 H 1.08007 * 120.00024 * 0.02562 * 16 15 11 18 18 C 1.37877 * 119.99770 * 179.97438 * 16 15 11 19 19 N 1.31507 * 120.00203 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99814 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46921 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47053 * 120.00105 * 20 18 16 23 23 H 1.48505 * 109.47064 * 240.00263 * 20 18 16 24 24 C 1.44298 * 113.64385 * 318.07538 * 9 8 7 25 25 H 1.08997 * 109.47408 * 300.00043 * 1 2 3 26 26 H 1.09003 * 109.46657 * 60.00076 * 1 2 3 27 27 H 1.09000 * 109.46954 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.04542 * 61.75151 * 5 3 2 29 29 H 1.09000 * 109.04031 * 302.87913 * 5 3 2 30 30 H 1.09002 * 109.57419 * 42.58300 * 6 5 3 31 31 H 1.08998 * 109.57371 * 162.83368 * 6 5 3 32 32 H 1.08998 * 108.78736 * 212.70549 * 7 6 5 33 33 H 1.08998 * 108.78545 * 330.92099 * 7 6 5 34 34 H 1.08994 * 108.72166 * 196.87980 * 8 7 6 35 35 H 1.08999 * 108.61796 * 78.91370 * 8 7 6 36 36 H 1.09001 * 109.46881 * 77.40120 * 10 9 8 37 37 H 1.08996 * 109.47229 * 197.41010 * 10 9 8 38 38 H 1.09003 * 109.46570 * 304.99415 * 15 11 10 39 39 H 1.08989 * 109.47539 * 64.99778 * 15 11 10 40 40 H 0.96997 * 120.00177 * 179.97438 * 19 18 16 41 41 H 1.09003 * 109.70029 * 335.68683 * 24 9 8 42 42 H 1.09007 * 109.70059 * 215.10398 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7676 0.0000 4 1 1.7028 2.2482 -0.8291 5 6 1.7595 2.3579 1.2513 6 6 2.0235 3.8797 1.2961 7 6 3.4801 4.1149 1.5949 8 6 4.3396 4.2393 0.3226 9 7 3.9897 3.2520 -0.7222 10 6 5.0087 3.2211 -1.7799 11 6 5.4273 4.6514 -2.1266 12 1 5.7552 5.1633 -1.2219 13 6 4.2825 5.3700 -2.7095 14 7 3.3990 5.9247 -3.1594 15 6 6.5754 4.6159 -3.1372 16 6 7.0694 6.0179 -3.3857 17 1 6.6106 6.8508 -2.8736 18 6 8.1077 6.2370 -4.2659 19 7 8.6667 5.2228 -4.8891 20 14 8.7205 7.9747 -4.5734 21 1 7.9309 8.9300 -3.7552 22 1 10.1538 8.0681 -4.1967 23 1 8.5641 8.3075 -6.0122 24 6 3.7395 1.9277 -0.2065 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 2.2796 1.8821 2.0826 29 1 0.6892 2.1795 1.3543 30 1 1.7723 4.3225 0.3323 31 1 1.4128 4.3334 2.0767 32 1 3.5754 5.0308 2.1781 33 1 3.8554 3.2821 2.1896 34 1 5.3869 4.1054 0.5933 35 1 4.2124 5.2414 -0.0868 36 1 5.8774 2.6628 -1.4312 37 1 4.5978 2.7379 -2.6663 38 1 7.3894 4.0087 -2.7411 39 1 6.2222 4.1840 -4.0734 40 1 9.3969 5.3771 -5.5086 41 1 4.2552 1.8006 0.7454 42 1 4.0939 1.1828 -0.9190 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134613161.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:07 Heat of formation + Delta-G solvation = 12.295698 kcal Electronic energy + Delta-G solvation = -20350.215819 eV Core-core repulsion = 17455.834662 eV Total energy + Delta-G solvation = -2894.381157 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.47534 -36.72827 -34.71812 -33.41533 -32.48911 -31.47718 -29.13915 -27.54356 -25.83294 -25.08485 -22.91016 -21.77578 -20.73477 -19.75649 -17.00193 -16.74626 -16.35096 -15.88680 -15.54076 -14.77431 -14.56000 -14.44514 -14.10645 -13.68719 -13.56743 -13.40281 -13.12189 -12.98685 -12.53619 -12.41997 -12.14595 -12.04105 -11.73414 -11.38228 -11.17844 -11.08941 -11.08354 -10.89061 -10.74303 -10.70164 -10.62873 -10.48490 -10.12282 -9.84925 -9.55141 -9.22261 -8.47605 -8.11473 -7.82397 -6.11181 -4.14508 1.52007 2.42837 3.27148 3.35560 3.39763 3.69182 3.76763 3.95166 4.39503 4.56733 4.65514 4.82520 4.87989 4.92565 4.95533 4.98046 5.08568 5.26963 5.30018 5.35497 5.42226 5.46713 5.50267 5.66195 5.68159 5.75194 5.81696 5.95737 5.97136 6.02765 6.06768 6.15342 6.31084 6.39681 6.45317 7.16503 7.26839 7.40937 7.50880 7.83847 8.21075 8.53346 8.90274 9.51163 10.99721 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.028197 B = 0.003693 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.775927 B = 7579.931192 C = 7920.105607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 S -0.280 6.280 3 C -0.037 4.037 4 H 0.095 0.905 5 C -0.113 4.113 6 C -0.107 4.107 7 C -0.120 4.120 8 C 0.055 3.945 9 N -0.550 5.550 10 C 0.069 3.931 11 C 0.002 3.998 12 H 0.102 0.898 13 C 0.253 3.747 14 N -0.476 5.476 15 C 0.031 3.969 16 C -0.526 4.526 17 H 0.057 0.943 18 C 0.063 3.937 19 N -0.891 5.891 20 Si 0.891 3.109 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.283 1.283 24 C 0.087 3.913 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.097 0.903 28 H 0.069 0.931 29 H 0.056 0.944 30 H 0.075 0.925 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.058 0.942 34 H 0.043 0.957 35 H 0.077 0.923 36 H 0.055 0.945 37 H 0.082 0.918 38 H 0.038 0.962 39 H 0.027 0.973 40 H 0.262 0.738 41 H 0.053 0.947 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.863 -9.215 14.398 20.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.287 4.287 2 S -0.052 6.052 3 C -0.166 4.166 4 H 0.113 0.887 5 C -0.152 4.152 6 C -0.147 4.147 7 C -0.158 4.158 8 C -0.072 4.072 9 N -0.275 5.275 10 C -0.059 4.059 11 C -0.020 4.020 12 H 0.120 0.880 13 C -0.063 4.063 14 N -0.153 5.153 15 C -0.008 4.008 16 C -0.564 4.564 17 H 0.075 0.925 18 C -0.139 4.139 19 N -0.529 5.529 20 Si 0.718 3.282 21 H -0.197 1.197 22 H -0.209 1.209 23 H -0.209 1.209 24 C -0.043 4.043 25 H 0.094 0.906 26 H 0.095 0.905 27 H 0.116 0.884 28 H 0.088 0.912 29 H 0.075 0.925 30 H 0.094 0.906 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.061 0.939 35 H 0.095 0.905 36 H 0.073 0.927 37 H 0.101 0.899 38 H 0.056 0.944 39 H 0.045 0.955 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -12.808 -9.193 13.387 20.683 hybrid contribution 0.615 1.468 0.184 1.603 sum -12.193 -7.724 13.572 19.812 Atomic orbital electron populations 1.23367 0.94338 1.06125 1.04852 1.86823 1.07293 1.13043 1.98036 1.22203 1.01003 0.91650 1.01777 0.88664 1.20899 1.00822 0.96411 0.97057 1.21285 0.96112 0.94765 1.02567 1.21425 0.95421 1.02005 0.96910 1.22538 0.97259 0.96623 0.90772 1.60591 1.46683 1.07172 1.13061 1.22316 0.92913 0.96437 0.94232 1.19400 0.89945 0.91790 1.00836 0.87997 1.28852 0.92751 0.92510 0.92236 1.80992 1.13206 1.10541 1.10575 1.19180 0.90332 0.98378 0.92874 1.21164 1.17173 0.92509 1.25575 0.92495 1.24950 0.96419 0.96995 0.95583 1.69942 1.24611 1.30227 1.28143 0.86547 0.78623 0.84787 0.78195 1.19679 1.20851 1.20941 1.21428 0.92039 0.90799 1.00046 0.90619 0.90547 0.88379 0.91240 0.92487 0.90617 0.92107 0.91335 0.92292 0.93919 0.90504 0.92655 0.89937 0.94427 0.95483 0.92823 0.92870 0.90197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.95 10.37 101.05 1.05 0.10 16 2 S -0.28 -3.01 21.57 -107.50 -2.32 -5.33 16 3 C -0.04 -0.40 2.27 -29.59 -0.07 -0.47 16 4 H 0.10 1.18 8.08 -51.89 -0.42 0.76 16 5 C -0.11 -1.07 4.50 -29.30 -0.13 -1.20 16 6 C -0.11 -1.05 5.62 -27.16 -0.15 -1.21 16 7 C -0.12 -1.18 5.29 -27.41 -0.15 -1.33 16 8 C 0.06 0.66 4.10 -2.70 -0.01 0.65 16 9 N -0.55 -7.13 3.88 -234.55 -0.91 -8.04 16 10 C 0.07 1.01 4.31 -3.82 -0.02 1.00 16 11 C 0.00 0.04 1.74 -93.40 -0.16 -0.12 16 12 H 0.10 1.72 6.11 -51.93 -0.32 1.40 16 13 C 0.25 5.18 12.96 -20.76 -0.27 4.91 16 14 N -0.48 -10.60 18.54 42.16 0.78 -9.81 16 15 C 0.03 0.71 4.42 -27.88 -0.12 0.59 16 16 C -0.53 -13.88 8.60 -34.44 -0.30 -14.18 16 17 H 0.06 1.50 7.59 -52.48 -0.40 1.10 16 18 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 19 N -0.89 -25.38 13.29 55.43 0.74 -24.65 16 20 Si 0.89 21.19 29.54 -169.99 -5.02 16.16 16 21 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 24 C 0.09 1.00 4.76 -4.70 -0.02 0.97 16 25 H 0.07 0.54 6.98 -51.93 -0.36 0.18 16 26 H 0.08 0.60 8.14 -51.92 -0.42 0.18 16 27 H 0.10 0.67 8.14 -51.92 -0.42 0.25 16 28 H 0.07 0.65 7.59 -51.93 -0.39 0.26 16 29 H 0.06 0.50 6.55 -51.93 -0.34 0.16 16 30 H 0.08 0.90 7.79 -51.93 -0.40 0.50 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.55 6.67 -51.93 -0.35 0.20 16 34 H 0.04 0.50 7.79 -51.93 -0.40 0.09 16 35 H 0.08 1.04 6.37 -51.93 -0.33 0.71 16 36 H 0.06 0.75 8.07 -51.93 -0.42 0.33 16 37 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.03 0.67 8.14 -51.94 -0.42 0.25 16 40 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 41 H 0.05 0.58 6.80 -51.93 -0.35 0.23 16 42 H 0.08 0.95 7.41 -51.93 -0.38 0.57 16 LS Contribution 341.62 15.07 5.15 5.15 Total: -1.00 -29.26 341.62 -9.00 -38.26 By element: Atomic # 1 Polarization: 3.88 SS G_CDS: -6.97 Total: -3.09 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: -0.45 Total: -8.65 kcal Atomic # 7 Polarization: -43.10 SS G_CDS: 0.61 Total: -42.50 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: -3.01 SS G_CDS: -2.32 Total: -5.33 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.26 -9.00 -38.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134613161.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.553 kcal (2) G-P(sol) polarization free energy of solvation -29.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds