Wall clock time and date at job start Tue Mar 31 2020 06:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47083 * 8.88460 * 3 2 1 5 5 N 1.46901 * 109.46742 * 179.83339 * 4 3 2 6 6 C 1.46910 * 110.99921 * 300.45239 * 5 4 3 7 7 C 1.50703 * 109.46530 * 293.95474 * 6 5 4 8 8 H 1.07999 * 120.00698 * 0.02562 * 7 6 5 9 9 C 1.37879 * 119.99544 * 180.02562 * 7 6 5 10 10 N 1.31518 * 120.00256 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00083 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.47065 * 89.99803 * 11 9 7 13 13 H 1.48498 * 109.47305 * 210.00143 * 11 9 7 14 14 H 1.48504 * 109.46874 * 330.00117 * 11 9 7 15 15 C 1.46896 * 111.00135 * 64.40295 * 5 4 3 16 16 C 1.52994 * 109.47219 * 75.44223 * 15 5 4 17 17 O 1.42897 * 109.47427 * 65.17645 * 16 15 5 18 18 C 1.42898 * 114.00449 * 180.02562 * 17 16 15 19 19 C 1.53003 * 109.47556 * 179.97438 * 18 17 16 20 20 H 1.09000 * 109.86572 * 54.29971 * 19 18 17 21 21 C 1.54099 * 109.87735 * 175.30540 * 19 18 17 22 22 C 1.54804 * 104.18561 * 121.45804 * 21 19 18 23 23 C 1.54991 * 102.09593 * 20.87705 * 22 21 19 24 24 O 1.43742 * 109.87776 * 293.29567 * 19 18 17 25 25 H 1.08995 * 109.46610 * 128.88344 * 3 2 1 26 26 H 1.09000 * 109.46798 * 248.88241 * 3 2 1 27 27 H 1.08996 * 109.47039 * 299.82532 * 4 3 2 28 28 H 1.08996 * 109.47397 * 59.83345 * 4 3 2 29 29 H 1.08996 * 109.46947 * 53.95258 * 6 5 4 30 30 H 1.09000 * 109.46909 * 173.95994 * 6 5 4 31 31 H 0.96995 * 119.99869 * 180.02562 * 10 9 7 32 32 H 1.09010 * 109.47035 * 195.44010 * 15 5 4 33 33 H 1.09003 * 109.47454 * 315.43681 * 15 5 4 34 34 H 1.08999 * 109.47580 * 185.17576 * 16 15 5 35 35 H 1.09002 * 109.47142 * 305.17812 * 16 15 5 36 36 H 1.09002 * 109.47163 * 300.00208 * 18 17 16 37 37 H 1.09008 * 109.47318 * 59.99536 * 18 17 16 38 38 H 1.09003 * 110.48362 * 240.12811 * 21 19 18 39 39 H 1.08997 * 110.49166 * 2.77701 * 21 19 18 40 40 H 1.09004 * 110.90867 * 139.07573 * 22 21 19 41 41 H 1.09003 * 110.90843 * 262.67791 * 22 21 19 42 42 H 1.09000 * 110.62310 * 81.47974 * 23 22 21 43 43 H 1.09008 * 110.62350 * 204.32040 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1187 -1.4243 -0.2228 5 7 4.5877 -1.4229 -0.2268 6 6 5.1104 -0.5541 -1.2898 7 6 4.7487 -1.1318 -2.6339 8 1 4.1864 -2.0520 -2.6926 9 6 5.1357 -0.4855 -3.7887 10 7 5.8209 0.6348 -3.7172 11 14 4.6881 -1.2018 -5.4548 12 1 3.3742 -0.6624 -5.8887 13 1 5.7277 -0.8316 -6.4483 14 1 4.6063 -2.6810 -5.3518 15 6 5.1173 -1.0268 1.0849 16 6 4.9653 -2.1889 2.0684 17 8 5.7862 -3.2800 1.6471 18 6 5.7170 -4.4233 2.5015 19 6 6.6301 -5.5234 1.9566 20 1 7.6394 -5.1344 1.8222 21 6 6.6537 -6.7159 2.9323 22 6 6.1571 -7.9110 2.0829 23 6 6.4246 -7.4164 0.6386 24 8 6.1205 -6.0043 0.7015 25 1 2.9710 0.6459 -0.7999 26 1 2.9711 0.3711 0.9587 27 1 2.7582 -2.0689 0.5788 28 1 2.7531 -1.7958 -1.1801 29 1 4.6754 0.4406 -1.1928 30 1 6.1949 -0.4865 -1.2033 31 1 6.0928 1.0896 -4.5297 32 1 6.1719 -0.7684 0.9879 33 1 4.5642 -0.1633 1.4544 34 1 5.2728 -1.8658 3.0629 35 1 3.9233 -2.5077 2.0959 36 1 6.0398 -4.1468 3.5053 37 1 4.6905 -4.7883 2.5377 38 1 7.6677 -6.8967 3.2892 39 1 5.9796 -6.5369 3.7700 40 1 6.7354 -8.8093 2.2998 41 1 5.0934 -8.0868 2.2432 42 1 7.4690 -7.5703 0.3674 43 1 5.7671 -7.9224 -0.0684 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152247725.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:18 Heat of formation + Delta-G solvation = -60.431241 kcal Electronic energy + Delta-G solvation = -22356.834670 eV Core-core repulsion = 19016.546965 eV Total energy + Delta-G solvation = -3340.287705 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.50430 -38.19589 -36.89320 -35.79020 -32.63884 -32.24505 -31.22345 -30.22026 -28.84341 -26.12166 -25.06740 -24.03624 -22.12783 -22.04635 -20.97437 -19.55308 -17.40584 -16.88827 -16.34355 -16.21322 -15.86400 -15.72064 -15.32664 -14.56247 -14.54357 -14.08093 -13.73585 -13.71542 -13.51653 -13.38352 -12.59798 -12.23104 -12.15069 -11.99138 -11.95163 -11.83716 -11.53921 -11.36181 -11.25287 -11.12363 -11.04237 -10.81047 -10.76606 -10.64203 -10.47244 -10.13798 -9.74759 -9.58661 -9.26646 -9.15355 -8.40001 -7.21721 -5.99607 -3.99676 3.11795 3.14495 3.36330 3.42906 3.48524 3.77269 3.93834 4.36597 4.39874 4.48375 4.67789 4.80770 4.93289 5.05265 5.15823 5.26019 5.36628 5.39781 5.45006 5.46021 5.50118 5.52722 5.58810 5.62397 5.64382 5.74814 5.80957 5.84587 5.87015 5.97223 6.08425 6.30026 6.38238 6.67699 6.95598 7.27008 7.28571 7.57439 7.84087 7.90808 8.11149 8.18008 8.55213 9.08118 9.64795 11.11027 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.011794 B = 0.004623 C = 0.003790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2373.462221 B = 6055.061987 C = 7386.855612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C 0.226 3.774 3 C -0.076 4.076 4 C 0.072 3.928 5 N -0.515 5.515 6 C 0.187 3.813 7 C -0.504 4.504 8 H 0.064 0.936 9 C 0.057 3.943 10 N -0.900 5.900 11 Si 0.893 3.107 12 H -0.282 1.282 13 H -0.288 1.288 14 H -0.272 1.272 15 C 0.047 3.953 16 C 0.070 3.930 17 O -0.355 6.355 18 C 0.063 3.937 19 C 0.080 3.920 20 H 0.075 0.925 21 C -0.150 4.150 22 C -0.155 4.155 23 C 0.041 3.959 24 O -0.352 6.352 25 H 0.124 0.876 26 H 0.098 0.902 27 H 0.060 0.940 28 H 0.091 0.909 29 H -0.001 1.001 30 H 0.033 0.967 31 H 0.260 0.740 32 H 0.079 0.921 33 H 0.046 0.954 34 H 0.040 0.960 35 H 0.045 0.955 36 H 0.052 0.948 37 H 0.050 0.950 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.059 0.941 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.557 -11.417 15.513 19.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.142 5.142 2 C -0.092 4.092 3 C -0.118 4.118 4 C -0.058 4.058 5 N -0.237 5.237 6 C 0.063 3.937 7 C -0.542 4.542 8 H 0.082 0.918 9 C -0.144 4.144 10 N -0.539 5.539 11 Si 0.721 3.279 12 H -0.209 1.209 13 H -0.213 1.213 14 H -0.197 1.197 15 C -0.082 4.082 16 C -0.007 4.007 17 O -0.273 6.273 18 C -0.014 4.014 19 C 0.021 3.979 20 H 0.093 0.907 21 C -0.187 4.187 22 C -0.193 4.193 23 C -0.036 4.036 24 O -0.270 6.270 25 H 0.142 0.858 26 H 0.116 0.884 27 H 0.079 0.921 28 H 0.109 0.891 29 H 0.016 0.984 30 H 0.051 0.949 31 H 0.070 0.930 32 H 0.098 0.902 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.077 0.923 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.146 -11.627 14.965 18.986 hybrid contribution -0.006 0.425 -0.388 0.576 sum 1.140 -11.202 14.577 18.419 Atomic orbital electron populations 1.81131 1.13237 1.09821 1.10048 1.29327 0.95310 0.92336 0.92195 1.20300 0.81399 1.04785 1.05344 1.22086 0.89581 0.91152 1.02984 1.62313 1.04287 1.54369 1.02760 1.19875 0.95768 0.89793 0.88284 1.21157 1.34646 1.08584 0.89840 0.91767 1.24937 0.95282 0.94989 0.99200 1.69942 1.38524 1.17069 1.28405 0.86568 0.77906 0.79675 0.83741 1.20858 1.21348 1.19707 1.22180 1.01420 0.93591 0.90983 1.22569 0.94066 0.88065 0.96047 1.88138 1.66265 1.22881 1.50038 1.22612 0.98944 0.87051 0.92816 1.22712 0.97778 0.93032 0.84343 0.90711 1.22939 1.02416 0.94472 0.98913 1.23134 1.02255 0.98142 0.95760 1.23591 1.00637 0.82790 0.96543 1.89165 1.79777 1.21748 1.36358 0.85799 0.88381 0.92113 0.89096 0.98353 0.94851 0.92999 0.90246 0.93634 0.94203 0.93713 0.93000 0.93157 0.90365 0.90406 0.90350 0.90524 0.92291 0.89010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -8.55 18.54 42.15 0.78 -7.77 16 2 C 0.23 3.71 15.43 -20.76 -0.32 3.39 16 3 C -0.08 -1.16 5.07 -29.51 -0.15 -1.31 16 4 C 0.07 1.25 4.99 -3.82 -0.02 1.23 16 5 N -0.52 -10.14 4.58 -236.07 -1.08 -11.23 16 6 C 0.19 4.47 4.45 -4.97 -0.02 4.45 16 7 C -0.50 -13.55 8.52 -34.44 -0.29 -13.85 16 8 H 0.06 1.75 7.10 -52.49 -0.37 1.38 16 9 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 10 N -0.90 -25.88 13.29 55.43 0.74 -25.15 16 11 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 14 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 15 C 0.05 0.74 5.26 -3.83 -0.02 0.72 16 16 C 0.07 0.98 6.13 37.15 0.23 1.21 16 17 O -0.35 -5.87 10.28 -37.24 -0.38 -6.25 16 18 C 0.06 0.80 5.39 37.16 0.20 1.00 16 19 C 0.08 0.98 3.70 -26.16 -0.10 0.88 16 20 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 21 C -0.15 -1.26 6.64 -25.21 -0.17 -1.43 16 22 C -0.16 -1.27 7.16 -24.73 -0.18 -1.45 16 23 C 0.04 0.44 7.72 38.21 0.29 0.74 16 24 O -0.35 -5.43 11.19 -37.24 -0.42 -5.84 16 25 H 0.12 2.12 6.26 -51.93 -0.33 1.80 16 26 H 0.10 1.22 6.24 -51.93 -0.32 0.90 16 27 H 0.06 0.94 6.66 -51.93 -0.35 0.59 16 28 H 0.09 1.78 6.87 -51.93 -0.36 1.42 16 29 H 0.00 -0.03 5.98 -51.93 -0.31 -0.34 16 30 H 0.03 0.88 7.83 -51.93 -0.41 0.47 16 31 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 32 H 0.08 1.34 7.74 -51.92 -0.40 0.94 16 33 H 0.05 0.61 5.86 -51.93 -0.30 0.31 16 34 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.04 0.60 6.70 -51.93 -0.35 0.26 16 36 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.05 0.63 8.14 -51.92 -0.42 0.20 16 38 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.08 0.57 7.70 -51.93 -0.40 0.17 16 40 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.09 0.90 8.14 -51.92 -0.42 0.48 16 LS Contribution 351.18 15.07 5.29 5.29 Total: -1.00 -32.22 351.18 -7.57 -39.79 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -6.83 Total: -2.49 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: -0.64 Total: -2.93 kcal Atomic # 7 Polarization: -44.58 SS G_CDS: 0.44 Total: -44.15 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: -0.80 Total: -12.10 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.22 -7.57 -39.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152247725.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.644 kcal (2) G-P(sol) polarization free energy of solvation -32.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds