Wall clock time and date at job start Tue Mar 31 2020 06:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13591 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47293 * 347.81414 * 3 2 1 5 5 N 1.46902 * 109.47286 * 179.37596 * 4 3 2 6 6 C 1.46904 * 110.99719 * 297.29471 * 5 4 3 7 7 C 1.50702 * 109.47228 * 292.74367 * 6 5 4 8 8 H 1.07998 * 119.99583 * 355.03210 * 7 6 5 9 9 C 1.37876 * 119.99824 * 175.02908 * 7 6 5 10 10 N 1.31513 * 120.00105 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 119.99675 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47412 * 90.00131 * 11 9 7 13 13 H 1.48506 * 109.46969 * 209.99920 * 11 9 7 14 14 H 1.48491 * 109.47196 * 329.99797 * 11 9 7 15 15 C 1.46894 * 111.00207 * 61.24920 * 5 4 3 16 16 C 1.52997 * 109.47281 * 66.04821 * 15 5 4 17 17 O 1.42894 * 109.47238 * 65.00247 * 16 15 5 18 18 C 1.42894 * 114.00314 * 180.02562 * 17 16 15 19 19 C 1.52999 * 109.47487 * 179.97438 * 18 17 16 20 20 H 1.08996 * 109.82501 * 305.56592 * 19 18 17 21 21 C 1.54385 * 109.83459 * 184.58546 * 19 18 17 22 22 C 1.55303 * 102.25310 * 219.12975 * 21 19 18 23 23 C 1.54947 * 100.94370 * 34.13298 * 22 21 19 24 24 O 1.43235 * 109.83035 * 66.44787 * 19 18 17 25 25 H 1.08999 * 109.46914 * 227.81427 * 3 2 1 26 26 H 1.09001 * 109.47416 * 107.81648 * 3 2 1 27 27 H 1.08999 * 109.47397 * 59.37496 * 4 3 2 28 28 H 1.09008 * 109.47243 * 299.37195 * 4 3 2 29 29 H 1.09003 * 109.46954 * 52.74397 * 6 5 4 30 30 H 1.09003 * 109.47251 * 172.74000 * 6 5 4 31 31 H 0.97002 * 119.99617 * 180.02562 * 10 9 7 32 32 H 1.09011 * 109.47318 * 306.04691 * 15 5 4 33 33 H 1.09001 * 109.47688 * 186.05077 * 15 5 4 34 34 H 1.09003 * 109.46981 * 305.00066 * 16 15 5 35 35 H 1.09002 * 109.47602 * 185.00423 * 16 15 5 36 36 H 1.09000 * 109.47006 * 299.99573 * 18 17 16 37 37 H 1.09007 * 109.47337 * 59.99537 * 18 17 16 38 38 H 1.08997 * 110.84615 * 337.31851 * 21 19 18 39 39 H 1.08997 * 110.84663 * 100.93893 * 21 19 18 40 40 H 1.08999 * 111.12360 * 276.21123 * 22 21 19 41 41 H 1.08997 * 111.16133 * 152.06375 * 22 21 19 42 42 H 1.08997 * 110.31028 * 204.63954 * 23 22 21 43 43 H 1.08997 * 110.39705 * 82.51078 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1186 -1.4091 0.3045 5 7 4.5876 -1.4116 0.2897 6 6 5.1012 -1.0598 -1.0409 7 6 4.7567 -2.1543 -2.0178 8 1 4.2822 -3.0596 -1.6692 9 6 5.0472 -1.9998 -3.3568 10 7 5.6255 -0.8975 -3.7812 11 14 4.6195 -3.3561 -4.5678 12 1 3.2488 -3.1353 -5.0947 13 1 5.5902 -3.3405 -5.6916 14 1 4.6796 -4.6708 -3.8801 15 6 5.1259 -0.5102 1.3171 16 6 4.7750 -1.0509 2.7046 17 8 5.4391 -2.2992 2.9114 18 6 5.1767 -2.8934 4.1842 19 6 5.9343 -4.2180 4.2947 20 1 5.6822 -4.8595 3.4503 21 6 5.5670 -4.9228 5.6182 22 6 6.9315 -5.5132 6.0670 23 6 7.9063 -4.4228 5.5556 24 8 7.3450 -3.9709 4.3129 25 1 2.9709 0.6909 0.7615 26 1 2.9712 0.3152 -0.9784 27 1 2.7465 -2.1013 -0.4507 28 1 2.7646 -1.7193 1.2877 29 1 4.6489 -0.1240 -1.3692 30 1 6.1839 -0.9429 -0.9931 31 1 5.8295 -0.7886 -4.7233 32 1 4.6920 0.4821 1.1934 33 1 6.2093 -0.4483 1.2146 34 1 3.6971 -1.1966 2.7759 35 1 5.0962 -0.3383 3.4643 36 1 5.5060 -2.2191 4.9748 37 1 4.1071 -3.0774 4.2858 38 1 5.1955 -4.2051 6.3497 39 1 4.8389 -5.7155 5.4465 40 1 7.1237 -6.4705 5.5825 41 1 6.9818 -5.6076 7.1517 42 1 8.8966 -4.8475 5.3913 43 1 7.9620 -3.5990 6.2673 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152247822.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:21 Heat of formation + Delta-G solvation = -61.686616 kcal Electronic energy + Delta-G solvation = -22250.322160 eV Core-core repulsion = 18909.980018 eV Total energy + Delta-G solvation = -3340.342142 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.62561 -38.27740 -36.88130 -35.81286 -32.67787 -32.32424 -31.21456 -30.27392 -28.91404 -26.13583 -25.24083 -24.11100 -22.12899 -21.83970 -21.11880 -19.53798 -17.44421 -17.20055 -16.39174 -16.18790 -16.08483 -15.86106 -14.93126 -14.81525 -14.51942 -14.07115 -13.88465 -13.66395 -13.51603 -13.19907 -12.86751 -12.25451 -12.14685 -12.06693 -11.93816 -11.90564 -11.60456 -11.41601 -11.33108 -11.15442 -11.09773 -11.02635 -10.78145 -10.64450 -10.48931 -10.18225 -9.75902 -9.50447 -9.28521 -9.19460 -8.42387 -7.25316 -6.02008 -4.02596 3.09209 3.11816 3.34271 3.41099 3.45727 3.63672 3.94245 4.27426 4.34053 4.45717 4.62078 4.76981 4.91798 5.00987 5.07889 5.23006 5.32692 5.34084 5.41151 5.42532 5.48392 5.51191 5.54016 5.55589 5.61530 5.63272 5.74078 5.77339 5.82572 6.05160 6.07000 6.28255 6.39297 6.64781 7.00366 7.24354 7.28201 7.54768 7.81869 7.88000 8.08433 8.14310 8.52383 9.05583 9.62103 11.08428 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.013141 B = 0.004143 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2130.254554 B = 6757.543940 C = 8038.903698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C 0.225 3.775 3 C -0.076 4.076 4 C 0.071 3.929 5 N -0.517 5.517 6 C 0.186 3.814 7 C -0.505 4.505 8 H 0.064 0.936 9 C 0.057 3.943 10 N -0.899 5.899 11 Si 0.894 3.106 12 H -0.282 1.282 13 H -0.287 1.287 14 H -0.273 1.273 15 C 0.048 3.952 16 C 0.067 3.933 17 O -0.353 6.353 18 C 0.052 3.948 19 C 0.083 3.917 20 H 0.092 0.908 21 C -0.149 4.149 22 C -0.156 4.156 23 C 0.046 3.954 24 O -0.363 6.363 25 H 0.098 0.902 26 H 0.122 0.878 27 H 0.092 0.908 28 H 0.062 0.938 29 H 0.003 0.997 30 H 0.031 0.969 31 H 0.261 0.739 32 H 0.044 0.956 33 H 0.081 0.919 34 H 0.045 0.955 35 H 0.041 0.959 36 H 0.044 0.956 37 H 0.053 0.947 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.084 0.916 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.426 -3.457 19.886 20.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.141 5.141 2 C -0.092 4.092 3 C -0.118 4.118 4 C -0.060 4.060 5 N -0.239 5.239 6 C 0.061 3.939 7 C -0.544 4.544 8 H 0.082 0.918 9 C -0.144 4.144 10 N -0.538 5.538 11 Si 0.722 3.278 12 H -0.208 1.208 13 H -0.213 1.213 14 H -0.197 1.197 15 C -0.080 4.080 16 C -0.010 4.010 17 O -0.272 6.272 18 C -0.025 4.025 19 C 0.026 3.974 20 H 0.110 0.890 21 C -0.187 4.187 22 C -0.194 4.194 23 C -0.031 4.031 24 O -0.283 6.283 25 H 0.116 0.884 26 H 0.140 0.860 27 H 0.110 0.890 28 H 0.080 0.920 29 H 0.021 0.979 30 H 0.049 0.951 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.099 0.901 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.096 0.904 39 H 0.104 0.896 40 H 0.098 0.902 41 H 0.100 0.900 42 H 0.102 0.898 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.227 -3.844 19.515 19.892 hybrid contribution -0.300 0.276 -0.563 0.695 sum -0.073 -3.568 18.952 19.285 Atomic orbital electron populations 1.81132 1.13224 1.09728 1.10057 1.29311 0.95299 0.92376 0.92221 1.20294 0.81463 1.03757 1.06321 1.22107 0.89658 0.92597 1.01612 1.62333 1.04306 1.50071 1.07185 1.19867 0.95694 0.95686 0.82619 1.21148 1.39201 1.02823 0.91233 0.91763 1.24948 0.95356 0.95726 0.98397 1.69942 1.42509 1.25960 1.15437 0.86559 0.77982 0.82544 0.80746 1.20841 1.21324 1.19730 1.22168 1.01586 0.93714 0.90571 1.22605 0.95905 0.85583 0.96954 1.88143 1.70418 1.35809 1.32796 1.22831 0.97982 0.94439 0.87290 1.22770 0.81633 0.94985 0.98047 0.89018 1.23114 0.98323 1.00484 0.96741 1.23266 0.94620 0.99649 1.01835 1.23391 0.97521 0.95487 0.86684 1.88603 1.20257 1.83421 1.35973 0.88356 0.85973 0.89015 0.91976 0.97946 0.95121 0.92954 0.93791 0.90061 0.93673 0.94074 0.93769 0.92916 0.90445 0.89646 0.90191 0.90037 0.89817 0.92536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -8.42 18.54 42.15 0.78 -7.64 16 2 C 0.23 3.64 15.43 -20.76 -0.32 3.32 16 3 C -0.08 -1.14 5.05 -29.52 -0.15 -1.29 16 4 C 0.07 1.20 4.91 -3.82 -0.02 1.18 16 5 N -0.52 -10.01 4.64 -236.06 -1.10 -11.10 16 6 C 0.19 4.40 4.54 -4.97 -0.02 4.38 16 7 C -0.51 -13.45 8.39 -34.44 -0.29 -13.74 16 8 H 0.06 1.72 7.39 -52.49 -0.39 1.34 16 9 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 10 N -0.90 -25.69 13.29 55.43 0.74 -24.96 16 11 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 14 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 15 C 0.05 0.77 5.12 -3.83 -0.02 0.75 16 16 C 0.07 0.92 5.99 37.16 0.22 1.15 16 17 O -0.35 -5.74 10.28 -37.80 -0.39 -6.13 16 18 C 0.05 0.64 5.47 37.16 0.20 0.85 16 19 C 0.08 1.00 3.81 -26.01 -0.10 0.90 16 20 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 21 C -0.15 -1.20 6.54 -24.78 -0.16 -1.36 16 22 C -0.16 -1.15 7.16 -24.48 -0.18 -1.33 16 23 C 0.05 0.44 7.78 38.19 0.30 0.73 16 24 O -0.36 -5.08 11.00 -37.80 -0.42 -5.50 16 25 H 0.10 1.20 6.33 -51.93 -0.33 0.87 16 26 H 0.12 2.05 6.28 -51.93 -0.33 1.73 16 27 H 0.09 1.76 6.98 -51.93 -0.36 1.39 16 28 H 0.06 0.93 6.32 -51.92 -0.33 0.60 16 29 H 0.00 0.07 6.02 -51.93 -0.31 -0.24 16 30 H 0.03 0.80 7.91 -51.93 -0.41 0.39 16 31 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 32 H 0.04 0.61 6.05 -51.92 -0.31 0.29 16 33 H 0.08 1.40 7.92 -51.93 -0.41 0.99 16 34 H 0.05 0.58 6.31 -51.93 -0.33 0.25 16 35 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.08 0.54 7.85 -51.93 -0.41 0.13 16 39 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 351.20 15.07 5.29 5.29 Total: -1.00 -31.65 351.20 -7.60 -39.25 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: -6.86 Total: -2.54 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: -0.63 Total: -3.01 kcal Atomic # 7 Polarization: -44.13 SS G_CDS: 0.42 Total: -43.70 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: -0.80 Total: -11.63 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.65 -7.60 -39.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152247822.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.439 kcal (2) G-P(sol) polarization free energy of solvation -31.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds