Wall clock time and date at job start Tue Mar 31 2020 05:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 5 5 H 1.08004 * 119.99528 * 119.99911 * 4 2 1 6 6 C 1.37876 * 120.00356 * 300.00710 * 4 2 1 7 7 N 1.31518 * 119.99554 * 359.97438 * 6 4 2 8 8 Si 1.86790 * 120.00086 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47385 * 59.99525 * 8 6 4 10 10 H 1.48500 * 109.47279 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47348 * 299.99599 * 8 6 4 12 12 N 1.46899 * 109.47163 * 240.00322 * 2 1 3 13 13 C 1.46893 * 111.00189 * 306.04680 * 12 2 1 14 14 C 1.46903 * 110.99939 * 69.99849 * 12 2 1 15 15 C 1.50701 * 109.47044 * 169.99655 * 14 12 2 16 16 C 1.33642 * 122.74677 * 94.71135 * 15 14 12 17 17 S 1.76200 * 107.92349 * 179.97438 * 16 15 14 18 18 C 1.70982 * 90.28057 * 0.27162 * 17 16 15 19 19 C 1.50696 * 124.91343 * 179.84225 * 18 17 16 20 20 C 1.53004 * 109.46990 * 240.00194 * 19 18 17 21 21 C 1.53004 * 109.47370 * 359.97438 * 19 18 17 22 22 C 1.53002 * 109.47361 * 120.00070 * 19 18 17 23 23 N 1.29022 * 110.16855 * 359.84482 * 18 17 16 24 24 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 26 26 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 27 27 H 0.97005 * 119.99198 * 180.02562 * 7 6 4 28 28 H 1.08997 * 109.47231 * 60.00105 * 13 12 2 29 29 H 1.09001 * 109.47433 * 179.97438 * 13 12 2 30 30 H 1.09003 * 109.47029 * 299.99707 * 13 12 2 31 31 H 1.08999 * 109.47506 * 289.99793 * 14 12 2 32 32 H 1.09002 * 109.47089 * 50.00220 * 14 12 2 33 33 H 1.07999 * 126.04093 * 0.03312 * 16 15 14 34 34 H 1.08996 * 109.46842 * 60.00032 * 20 19 18 35 35 H 1.09008 * 109.46878 * 179.97438 * 20 19 18 36 36 H 1.08997 * 109.47200 * 299.99901 * 20 19 18 37 37 H 1.09001 * 109.47098 * 60.00364 * 21 19 18 38 38 H 1.08996 * 109.47299 * 180.02562 * 21 19 18 39 39 H 1.08998 * 109.46902 * 300.00397 * 21 19 18 40 40 H 1.08997 * 109.46943 * 60.00029 * 22 19 18 41 41 H 1.08996 * 109.47253 * 179.97438 * 22 19 18 42 42 H 1.08998 * 109.46700 * 299.99522 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9434 0.8300 2.6034 8 14 2.3214 -1.1205 4.0078 9 1 3.8064 -1.1211 4.0081 10 1 1.8269 -0.4202 5.2204 11 1 1.8259 -2.5204 4.0076 12 7 2.0197 -0.6924 -1.1995 13 6 1.4344 -2.0353 -1.3080 14 6 1.7529 0.0974 -2.4090 15 6 2.4775 -0.5160 -3.5794 16 6 1.8973 -1.3823 -4.4155 17 16 3.0882 -1.8456 -5.6287 18 6 4.2501 -0.8346 -4.8864 19 6 5.6684 -0.6557 -5.3634 20 6 6.6360 -1.0851 -4.2587 21 6 5.9006 -1.5163 -6.6070 22 6 5.9087 0.8154 -5.7085 23 7 3.7370 -0.2470 -3.8587 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 0.7094 1.1615 3.4845 28 1 0.3492 -1.9548 -1.3695 29 1 1.8134 -2.5256 -2.2047 30 1 1.7061 -2.6220 -0.4304 31 1 0.6815 0.1054 -2.6088 32 1 2.1025 1.1190 -2.2603 33 1 0.8782 -1.7352 -4.3582 34 1 6.4648 -2.1331 -4.0130 35 1 7.6619 -0.9561 -4.6040 36 1 6.4708 -0.4723 -3.3726 37 1 5.2113 -1.2108 -7.3941 38 1 6.9265 -1.3873 -6.9517 39 1 5.7295 -2.5642 -6.3607 40 1 5.7434 1.4281 -4.8224 41 1 6.9346 0.9449 -6.0532 42 1 5.2194 1.1212 -6.4956 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161878313.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:38 Heat of formation + Delta-G solvation = 38.848198 kcal Electronic energy + Delta-G solvation = -20441.529840 eV Core-core repulsion = 17548.300085 eV Total energy + Delta-G solvation = -2893.229754 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.92885 -37.41530 -36.32227 -32.76937 -30.37628 -28.31980 -27.56178 -27.31204 -27.13799 -25.21133 -24.79269 -23.34084 -20.10148 -19.17079 -19.07402 -17.21355 -16.09082 -15.61720 -15.35159 -14.74305 -14.26167 -14.19141 -14.03204 -13.59390 -13.35293 -13.24945 -12.63801 -12.51277 -12.35928 -12.24351 -11.77196 -11.71407 -11.51394 -11.16835 -11.15504 -11.05308 -11.02852 -10.84742 -10.73549 -10.64761 -10.42479 -10.02272 -9.81084 -9.30847 -9.13966 -8.89369 -8.50078 -8.34769 -7.11789 -5.97503 -4.00653 0.93544 1.55613 1.93595 3.08936 3.35359 3.39218 3.42924 4.04860 4.45350 4.67171 4.78331 4.93279 5.19497 5.28268 5.34564 5.39504 5.41951 5.49726 5.63742 5.67885 5.72140 5.82479 5.84366 5.93925 6.02559 6.13723 6.20580 6.25421 6.30593 6.40386 6.48553 6.68169 6.82272 6.89859 7.12512 7.47312 7.72830 7.86849 8.07830 8.17456 8.40329 8.61546 9.04661 9.63891 11.09698 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.024046 B = 0.004147 C = 0.003863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.176172 B = 6750.229978 C = 7246.997723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.212 3.788 3 H 0.040 0.960 4 C -0.496 4.496 5 H 0.061 0.939 6 C 0.058 3.942 7 N -0.896 5.896 8 Si 0.897 3.103 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.278 1.278 12 N -0.524 5.524 13 C 0.033 3.967 14 C 0.124 3.876 15 C 0.100 3.900 16 C -0.265 4.265 17 S 0.084 5.916 18 C 0.061 3.939 19 C 0.012 3.988 20 C -0.135 4.135 21 C -0.152 4.152 22 C -0.134 4.134 23 N -0.446 5.446 24 H 0.032 0.968 25 H 0.089 0.911 26 H 0.006 0.994 27 H 0.260 0.740 28 H 0.019 0.981 29 H 0.041 0.959 30 H 0.071 0.929 31 H 0.042 0.958 32 H 0.083 0.917 33 H 0.171 0.829 34 H 0.056 0.944 35 H 0.062 0.938 36 H 0.071 0.929 37 H 0.061 0.939 38 H 0.072 0.928 39 H 0.062 0.938 40 H 0.069 0.931 41 H 0.062 0.938 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.210 -3.863 -18.760 20.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.106 3.894 3 H 0.058 0.942 4 C -0.535 4.535 5 H 0.079 0.921 6 C -0.143 4.143 7 N -0.535 5.535 8 Si 0.725 3.275 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.204 1.204 12 N -0.248 5.248 13 C -0.116 4.116 14 C -0.007 4.007 15 C -0.032 4.032 16 C -0.404 4.404 17 S 0.339 5.661 18 C -0.218 4.218 19 C 0.008 3.992 20 C -0.193 4.193 21 C -0.210 4.210 22 C -0.192 4.192 23 N -0.159 5.159 24 H 0.051 0.949 25 H 0.108 0.892 26 H 0.025 0.975 27 H 0.070 0.930 28 H 0.037 0.963 29 H 0.059 0.941 30 H 0.090 0.910 31 H 0.060 0.940 32 H 0.102 0.898 33 H 0.188 0.812 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.091 0.909 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.081 0.919 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.929 -4.104 -19.113 20.740 hybrid contribution -1.263 -0.081 1.557 2.006 sum 5.665 -4.185 -17.556 18.916 Atomic orbital electron populations 1.22422 1.00834 0.99425 1.00526 1.19333 0.89702 0.94573 0.85748 0.94206 1.21046 1.30417 1.12433 0.89555 0.92089 1.24913 0.95278 0.95161 0.98933 1.69879 1.37147 1.23059 1.23448 0.86578 0.79255 0.79557 0.82101 1.20245 1.21410 1.20420 1.62293 1.58901 1.02239 1.01384 1.22272 0.96308 0.92095 1.00919 1.20585 0.95159 0.97666 0.87337 1.20386 0.88959 0.96376 0.97441 1.26830 1.05060 1.07242 1.01237 1.83672 1.04776 1.46311 1.31295 1.27064 1.00687 0.98386 0.95656 1.19192 0.86896 0.97364 0.95712 1.21841 0.97419 1.01945 0.98122 1.22007 1.02734 0.99729 0.96490 1.21831 1.01393 0.93658 1.02342 1.65965 1.11158 1.24365 1.14451 0.94925 0.89243 0.97496 0.92993 0.96300 0.94059 0.90994 0.94030 0.89826 0.81189 0.92538 0.91939 0.90987 0.92005 0.90947 0.91911 0.91204 0.91861 0.92708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.19 8.22 37.16 0.31 -3.88 16 2 C 0.21 5.43 2.31 -68.86 -0.16 5.27 16 3 H 0.04 1.12 7.93 -51.93 -0.41 0.71 16 4 C -0.50 -13.80 7.97 -34.44 -0.27 -14.07 16 5 H 0.06 1.72 7.10 -52.48 -0.37 1.34 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 7 N -0.90 -25.69 11.32 55.43 0.63 -25.07 16 8 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 12 N -0.52 -11.72 4.69 -237.73 -1.12 -12.83 16 13 C 0.03 0.66 8.56 60.06 0.51 1.18 16 14 C 0.12 2.39 4.98 -4.97 -0.02 2.37 16 15 C 0.10 1.75 5.59 -84.22 -0.47 1.28 16 16 C -0.26 -3.91 9.76 29.12 0.28 -3.62 16 17 S 0.08 1.04 21.57 -107.50 -2.32 -1.27 16 18 C 0.06 0.86 5.78 -13.46 -0.08 0.79 16 19 C 0.01 0.14 0.99 -155.66 -0.15 -0.02 16 20 C -0.13 -1.51 8.45 37.16 0.31 -1.20 16 21 C -0.15 -1.27 7.54 37.16 0.28 -0.99 16 22 C -0.13 -1.36 8.45 37.16 0.31 -1.05 16 23 N -0.45 -7.75 10.51 -8.06 -0.08 -7.83 16 24 H 0.03 0.76 6.33 -51.93 -0.33 0.43 16 25 H 0.09 2.39 6.07 -51.93 -0.32 2.08 16 26 H 0.01 0.13 6.91 -51.93 -0.36 -0.22 16 27 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 28 H 0.02 0.37 6.21 -51.93 -0.32 0.05 16 29 H 0.04 0.76 6.22 -51.93 -0.32 0.43 16 30 H 0.07 1.56 6.86 -51.93 -0.36 1.21 16 31 H 0.04 0.76 7.02 -51.93 -0.36 0.40 16 32 H 0.08 1.68 7.93 -51.93 -0.41 1.27 16 33 H 0.17 2.22 8.06 -52.49 -0.42 1.79 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 36 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.06 0.49 7.92 -51.93 -0.41 0.08 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.53 7.92 -51.93 -0.41 0.12 16 40 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 340.64 15.07 5.13 5.13 Total: -1.00 -29.66 340.64 -8.93 -38.59 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -6.91 Total: -0.92 kcal Atomic # 6 Polarization: -13.19 SS G_CDS: 0.76 Total: -12.43 kcal Atomic # 7 Polarization: -45.16 SS G_CDS: -0.57 Total: -45.74 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: 1.04 SS G_CDS: -2.32 Total: -1.27 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.66 -8.93 -38.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161878313.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.439 kcal (2) G-P(sol) polarization free energy of solvation -29.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds