Wall clock time and date at job start Tue Mar 31 2020 05:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.46862 * 2 1 4 4 C 1.50703 * 109.47230 * 240.00104 * 2 1 3 5 5 H 1.08005 * 119.99876 * 239.99714 * 4 2 1 6 6 C 1.37875 * 119.99989 * 59.99990 * 4 2 1 7 7 N 1.31518 * 119.99944 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99979 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47418 * 89.99710 * 8 6 4 10 10 H 1.48498 * 109.47091 * 209.99770 * 8 6 4 11 11 H 1.48498 * 109.46997 * 329.99580 * 8 6 4 12 12 N 1.46906 * 109.47378 * 119.99897 * 2 1 3 13 13 C 1.46905 * 110.99922 * 176.04894 * 12 2 1 14 14 C 1.46895 * 110.99789 * 300.00188 * 12 2 1 15 15 C 1.50702 * 109.46960 * 169.99981 * 14 12 2 16 16 C 1.33641 * 122.75232 * 94.70516 * 15 14 12 17 17 S 1.76196 * 107.92668 * 179.97438 * 16 15 14 18 18 C 1.70982 * 90.28268 * 0.27792 * 17 16 15 19 19 C 1.50692 * 124.91779 * 179.84029 * 18 17 16 20 20 C 1.52999 * 109.47421 * 239.99997 * 19 18 17 21 21 C 1.53002 * 109.47021 * 359.97438 * 19 18 17 22 22 C 1.53006 * 109.47496 * 119.99761 * 19 18 17 23 23 N 1.29031 * 110.16465 * 359.83772 * 18 17 16 24 24 H 1.08992 * 109.47715 * 60.00053 * 1 2 3 25 25 H 1.09004 * 109.46862 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46998 * 299.99522 * 1 2 3 27 27 H 0.96997 * 119.99752 * 180.02562 * 7 6 4 28 28 H 1.08991 * 109.47190 * 59.99892 * 13 12 2 29 29 H 1.09001 * 109.46809 * 180.02562 * 13 12 2 30 30 H 1.08997 * 109.46774 * 299.99652 * 13 12 2 31 31 H 1.08998 * 109.47225 * 289.99542 * 14 12 2 32 32 H 1.09001 * 109.47444 * 49.99844 * 14 12 2 33 33 H 1.08004 * 126.03215 * 0.03936 * 16 15 14 34 34 H 1.09001 * 109.46874 * 59.99726 * 20 19 18 35 35 H 1.09001 * 109.47287 * 179.97438 * 20 19 18 36 36 H 1.09005 * 109.46588 * 300.00057 * 20 19 18 37 37 H 1.09001 * 109.47390 * 60.00161 * 21 19 18 38 38 H 1.09001 * 109.47150 * 179.97438 * 21 19 18 39 39 H 1.08997 * 109.47041 * 299.99424 * 21 19 18 40 40 H 1.09005 * 109.46963 * 59.99667 * 22 19 18 41 41 H 1.08993 * 109.47151 * 180.02562 * 22 19 18 42 42 H 1.08999 * 109.46775 * 300.00651 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3213 -1.1203 -4.0079 9 1 1.3428 -2.1617 -4.4119 10 1 2.4865 -0.1413 -5.1122 11 1 3.6293 -1.7582 -3.7122 12 7 2.0197 -0.6925 1.1995 13 6 3.4851 -0.7944 1.1870 14 6 1.5486 -0.0264 2.4210 15 6 1.8580 -0.8911 3.6159 16 6 2.9625 -0.7380 4.3526 17 16 2.9282 -1.9427 5.6379 18 6 1.4363 -2.5378 5.0520 19 6 0.6666 -3.6830 5.6579 20 6 0.5056 -4.7952 4.6198 21 6 1.4272 -4.2238 6.8703 22 6 -0.7143 -3.1930 6.0987 23 7 1.0647 -1.8644 4.0160 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 0.7081 1.1608 -3.4844 28 1 3.9186 0.2052 1.1591 29 1 3.8210 -1.3116 2.0859 30 1 3.8030 -1.3531 0.3067 31 1 2.0519 0.9346 2.5280 32 1 0.4722 0.1324 2.3564 33 1 3.7383 -0.0046 4.1895 34 1 1.4893 -5.1443 4.3058 35 1 -0.0507 -5.6237 5.0582 36 1 -0.0361 -4.4101 3.7558 37 1 1.5423 -3.4317 7.6101 38 1 0.8703 -5.0519 7.3088 39 1 2.4107 -4.5732 6.5559 40 1 -1.2559 -2.8078 5.2347 41 1 -1.2707 -4.0212 6.5373 42 1 -0.5995 -2.4005 6.8382 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161878441.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:40 Heat of formation + Delta-G solvation = 39.285709 kcal Electronic energy + Delta-G solvation = -20462.305236 eV Core-core repulsion = 17569.094454 eV Total energy + Delta-G solvation = -2893.210782 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.92069 -37.32530 -36.20730 -32.81399 -30.30136 -28.84818 -27.56469 -27.32058 -27.31455 -25.08987 -24.33574 -23.09614 -20.13149 -19.24669 -19.15792 -17.20641 -16.25656 -15.57930 -15.30812 -14.78987 -14.19395 -14.08036 -14.03412 -13.90408 -13.26699 -13.18097 -12.51436 -12.46547 -12.33759 -12.24438 -11.84777 -11.77427 -11.52108 -11.32557 -11.13203 -11.08963 -11.02679 -10.94781 -10.64924 -10.45692 -10.09319 -10.01396 -9.81527 -9.29998 -9.13626 -8.88034 -8.52808 -8.35402 -7.14808 -5.98911 -4.03097 0.93778 1.55863 1.93881 3.09195 3.32627 3.38737 3.42125 4.04890 4.43559 4.67099 4.78161 4.93306 5.16923 5.28274 5.33360 5.39327 5.42319 5.49557 5.63571 5.68236 5.71906 5.82264 5.84101 5.93870 6.02604 6.14591 6.20901 6.24851 6.29901 6.42024 6.48541 6.78850 6.90069 7.10911 7.17966 7.54218 7.74091 7.85381 8.08874 8.24199 8.34439 8.61323 9.02929 9.61584 11.07957 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.025430 B = 0.004069 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.797038 B = 6880.491213 C = 7120.623706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.214 3.786 3 H -0.001 1.001 4 C -0.501 4.501 5 H 0.063 0.937 6 C 0.059 3.941 7 N -0.894 5.894 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.275 1.275 12 N -0.527 5.527 13 C 0.036 3.964 14 C 0.119 3.881 15 C 0.101 3.899 16 C -0.265 4.265 17 S 0.084 5.916 18 C 0.061 3.939 19 C 0.012 3.988 20 C -0.135 4.135 21 C -0.152 4.152 22 C -0.134 4.134 23 N -0.446 5.446 24 H 0.085 0.915 25 H 0.036 0.964 26 H 0.008 0.992 27 H 0.260 0.740 28 H 0.011 0.989 29 H 0.041 0.959 30 H 0.075 0.925 31 H 0.037 0.963 32 H 0.092 0.908 33 H 0.171 0.829 34 H 0.055 0.945 35 H 0.062 0.938 36 H 0.071 0.929 37 H 0.061 0.939 38 H 0.072 0.928 39 H 0.062 0.938 40 H 0.069 0.931 41 H 0.062 0.938 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.334 -6.818 18.985 20.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.108 3.892 3 H 0.016 0.984 4 C -0.540 4.540 5 H 0.081 0.919 6 C -0.142 4.142 7 N -0.533 5.533 8 Si 0.725 3.275 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.200 1.200 12 N -0.252 5.252 13 C -0.112 4.112 14 C -0.012 4.012 15 C -0.031 4.031 16 C -0.404 4.404 17 S 0.339 5.661 18 C -0.218 4.218 19 C 0.008 3.992 20 C -0.193 4.193 21 C -0.210 4.210 22 C -0.192 4.192 23 N -0.159 5.159 24 H 0.103 0.897 25 H 0.055 0.945 26 H 0.027 0.973 27 H 0.070 0.930 28 H 0.029 0.971 29 H 0.060 0.940 30 H 0.094 0.906 31 H 0.055 0.945 32 H 0.110 0.890 33 H 0.188 0.812 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.081 0.919 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.254 -7.536 19.380 20.832 hybrid contribution 0.623 1.033 -1.656 2.048 sum 1.877 -6.503 17.725 18.973 Atomic orbital electron populations 1.21848 0.97569 0.99849 0.99786 1.19271 0.92463 0.91894 0.85571 0.98377 1.21138 1.30972 1.12200 0.89682 0.91915 1.24920 0.95242 0.95074 0.98968 1.69896 1.36972 1.23056 1.23371 0.86519 0.79207 0.79302 0.82498 1.20653 1.21346 1.19986 1.62083 1.09207 1.52597 1.01320 1.22244 0.88837 0.98979 1.01159 1.20683 1.02139 0.91670 0.86741 1.20377 0.90160 0.94811 0.97749 1.26839 1.04790 1.07275 1.01515 1.83669 1.22841 1.28377 1.31180 1.27067 0.96728 1.01638 0.96388 1.19189 0.94542 0.90498 0.94925 1.21840 1.02368 0.96482 0.98629 1.22007 1.00477 1.01649 0.96827 1.21832 0.94424 1.01026 1.01938 1.65965 1.32526 1.06140 1.11264 0.89653 0.94525 0.97267 0.93011 0.97051 0.93976 0.90600 0.94469 0.88974 0.81185 0.92538 0.91939 0.91006 0.92009 0.90952 0.91904 0.91205 0.91864 0.92712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.33 8.76 37.15 0.33 -3.01 16 2 C 0.21 5.52 2.06 -68.86 -0.14 5.38 16 3 H 0.00 -0.04 8.14 -51.93 -0.42 -0.46 16 4 C -0.50 -13.95 7.93 -34.44 -0.27 -14.22 16 5 H 0.06 1.75 6.39 -52.48 -0.34 1.42 16 6 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 7 N -0.89 -25.68 11.32 55.43 0.63 -25.05 16 8 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 9 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 11 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 12 N -0.53 -11.89 4.61 -237.73 -1.10 -12.98 16 13 C 0.04 0.75 8.99 60.07 0.54 1.29 16 14 C 0.12 2.32 5.22 -4.98 -0.03 2.29 16 15 C 0.10 1.77 5.59 -84.22 -0.47 1.30 16 16 C -0.27 -3.94 9.76 29.12 0.28 -3.65 16 17 S 0.08 1.05 21.57 -107.50 -2.32 -1.27 16 18 C 0.06 0.86 5.78 -13.46 -0.08 0.78 16 19 C 0.01 0.14 0.99 -155.66 -0.15 -0.02 16 20 C -0.13 -1.51 8.45 37.16 0.31 -1.19 16 21 C -0.15 -1.27 7.54 37.16 0.28 -0.99 16 22 C -0.13 -1.36 8.45 37.16 0.31 -1.05 16 23 N -0.45 -7.74 10.51 -8.06 -0.08 -7.83 16 24 H 0.08 2.32 6.07 -51.93 -0.32 2.01 16 25 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 26 H 0.01 0.19 6.20 -51.93 -0.32 -0.13 16 27 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 28 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.04 0.78 6.23 -51.93 -0.32 0.45 16 30 H 0.08 1.67 6.23 -51.93 -0.32 1.34 16 31 H 0.04 0.69 8.08 -51.93 -0.42 0.27 16 32 H 0.09 1.87 5.83 -51.93 -0.30 1.57 16 33 H 0.17 2.23 8.06 -52.48 -0.42 1.81 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.06 0.49 7.92 -51.93 -0.41 0.08 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.53 7.92 -51.93 -0.41 0.12 16 40 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 342.37 15.07 5.16 5.16 Total: -1.00 -29.87 342.37 -8.87 -38.73 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -6.95 Total: -1.77 kcal Atomic # 6 Polarization: -12.36 SS G_CDS: 0.82 Total: -11.54 kcal Atomic # 7 Polarization: -45.31 SS G_CDS: -0.55 Total: -45.87 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: 1.05 SS G_CDS: -2.32 Total: -1.27 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -29.87 -8.87 -38.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161878441.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.018 kcal (2) G-P(sol) polarization free energy of solvation -29.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds