Wall clock time and date at job start Tue Mar 31 2020 05:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47333 * 2 1 4 4 H 1.09004 * 109.46979 * 174.08718 * 3 2 1 5 5 C 1.50702 * 109.47244 * 54.08984 * 3 2 1 6 6 H 1.08000 * 119.99919 * 240.00628 * 5 3 2 7 7 C 1.37880 * 120.00098 * 59.99535 * 5 3 2 8 8 N 1.31516 * 119.99966 * 0.02562 * 7 5 3 9 9 Si 1.86794 * 120.00064 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47313 * 60.00364 * 9 7 5 11 11 H 1.48508 * 109.47366 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47146 * 299.99965 * 9 7 5 13 13 N 1.46896 * 109.47388 * 294.08717 * 3 2 1 14 14 C 1.46895 * 110.99987 * 275.77819 * 13 3 2 15 15 C 1.50706 * 109.47003 * 176.22222 * 14 13 3 16 16 C 1.33637 * 122.75415 * 94.70435 * 15 14 13 17 17 S 1.76192 * 107.92663 * 179.97438 * 16 15 14 18 18 C 1.70979 * 90.28131 * 0.27422 * 17 16 15 19 19 C 1.50704 * 124.91532 * 179.84000 * 18 17 16 20 20 C 1.52997 * 109.47291 * 240.00205 * 19 18 17 21 21 C 1.53004 * 109.46883 * 0.02562 * 19 18 17 22 22 C 1.53003 * 109.47063 * 120.00154 * 19 18 17 23 23 N 1.29023 * 110.16707 * 359.84076 * 18 17 16 24 24 H 1.09002 * 109.47248 * 298.56152 * 1 2 3 25 25 H 1.09003 * 109.47492 * 178.55658 * 1 2 3 26 26 H 1.09002 * 109.46773 * 58.55640 * 1 2 3 27 27 H 1.09003 * 109.46905 * 120.00643 * 2 1 3 28 28 H 1.08994 * 109.46887 * 239.99652 * 2 1 3 29 29 H 0.97000 * 120.00059 * 179.97438 * 8 7 5 30 30 H 1.00903 * 110.99559 * 39.72690 * 13 3 2 31 31 H 1.09005 * 109.47061 * 296.21493 * 14 13 3 32 32 H 1.08997 * 109.47274 * 56.22008 * 14 13 3 33 33 H 1.08006 * 126.03573 * 0.03703 * 16 15 14 34 34 H 1.08996 * 109.47074 * 59.99877 * 20 19 18 35 35 H 1.08997 * 109.47337 * 180.02562 * 20 19 18 36 36 H 1.09000 * 109.46713 * 300.00335 * 20 19 18 37 37 H 1.08999 * 109.47085 * 60.00269 * 21 19 18 38 38 H 1.09002 * 109.47078 * 179.97438 * 21 19 18 39 39 H 1.08996 * 109.47266 * 299.99991 * 21 19 18 40 40 H 1.08991 * 109.47135 * 59.99653 * 22 19 18 41 41 H 1.09002 * 109.47100 * 180.02562 * 22 19 18 42 42 H 1.09005 * 109.46710 * 299.99702 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1249 1.4442 0.1059 5 6 1.4219 2.1939 1.1508 6 1 0.8149 3.0670 0.9618 7 6 1.6309 1.7666 2.4449 8 7 2.3702 0.7036 2.6751 9 14 0.8641 2.6976 3.8713 10 1 -0.6138 2.6946 3.7269 11 1 1.2383 2.0408 5.1495 12 1 1.3587 4.0978 3.8715 13 7 1.6704 2.0926 -1.2643 14 6 2.6512 1.7938 -2.3163 15 6 2.1918 2.3988 -3.6179 16 6 2.5967 3.6005 -4.0395 17 16 1.8271 3.9182 -5.5923 18 6 1.0310 2.4070 -5.5164 19 6 0.0897 1.8743 -6.5659 20 6 -1.2855 1.6308 -5.9412 21 6 -0.0380 2.8927 -7.7005 22 6 0.6377 0.5583 -7.1216 23 7 1.3527 1.7888 -4.4306 24 1 -0.3634 0.4913 0.9026 25 1 -0.3634 -1.0273 -0.0259 26 1 -0.3633 0.5361 -0.8768 27 1 1.8933 -0.5140 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 2.5176 0.4032 3.5856 30 1 0.7406 1.8247 -1.5503 31 1 3.6184 2.2148 -2.0415 32 1 2.7441 0.7138 -2.4304 33 1 3.2766 4.2601 -3.5205 34 1 -1.6759 2.5683 -5.5453 35 1 -1.9662 1.2451 -6.7002 36 1 -1.1941 0.9051 -5.1330 37 1 0.9419 3.0657 -8.1455 38 1 -0.7185 2.5072 -8.4599 39 1 -0.4281 3.8304 -7.3049 40 1 0.7291 -0.1673 -6.3135 41 1 -0.0429 0.1732 -7.8810 42 1 1.6175 0.7319 -7.5667 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000169280571.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:08 Heat of formation + Delta-G solvation = 23.748878 kcal Electronic energy + Delta-G solvation = -20262.051118 eV Core-core repulsion = 17368.166608 eV Total energy + Delta-G solvation = -2893.884510 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.91130 -37.11976 -36.11586 -32.64219 -30.92529 -29.30991 -27.61463 -27.38695 -26.75814 -25.25047 -23.87145 -23.10418 -19.97761 -19.27155 -19.17499 -17.28097 -16.14347 -15.62092 -15.06483 -14.73659 -14.54858 -14.22218 -13.95339 -13.57325 -13.32604 -12.91933 -12.76348 -12.47715 -12.38805 -12.25706 -11.92805 -11.83930 -11.64056 -11.42925 -11.23606 -11.15620 -11.07208 -10.84752 -10.64940 -10.47899 -9.93743 -9.82162 -9.50008 -9.40817 -9.18995 -8.96190 -8.53199 -8.31208 -7.18352 -5.94386 -3.95792 0.92340 1.53035 1.91780 3.03377 3.36398 3.40467 3.44061 3.99375 4.47523 4.61756 4.72740 4.88032 5.23174 5.34786 5.37245 5.44151 5.45196 5.57766 5.60764 5.64962 5.67179 5.75477 5.78464 5.89471 6.08834 6.14599 6.18545 6.29167 6.40351 6.45976 6.50318 6.62924 6.98419 7.30130 7.33013 7.55266 7.74275 7.91555 7.99980 8.30853 8.57112 8.64625 9.09239 9.67485 11.12726 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.026214 B = 0.003900 C = 0.003729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.893612 B = 7177.719946 C = 7506.636715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.145 4.145 3 C 0.216 3.784 4 H 0.033 0.967 5 C -0.488 4.488 6 H 0.060 0.940 7 C 0.058 3.942 8 N -0.896 5.896 9 Si 0.894 3.106 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.278 1.278 13 N -0.677 5.677 14 C 0.131 3.869 15 C 0.083 3.917 16 C -0.244 4.244 17 S 0.090 5.910 18 C 0.058 3.942 19 C 0.012 3.988 20 C -0.135 4.135 21 C -0.152 4.152 22 C -0.133 4.133 23 N -0.461 5.461 24 H 0.065 0.935 25 H 0.021 0.979 26 H 0.029 0.971 27 H 0.092 0.908 28 H 0.012 0.988 29 H 0.259 0.741 30 H 0.331 0.669 31 H 0.079 0.921 32 H 0.038 0.962 33 H 0.176 0.824 34 H 0.056 0.944 35 H 0.062 0.938 36 H 0.068 0.932 37 H 0.061 0.939 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.067 0.933 41 H 0.063 0.937 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.930 2.703 -20.143 20.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.184 4.184 3 C 0.108 3.892 4 H 0.051 0.949 5 C -0.527 4.527 6 H 0.078 0.922 7 C -0.143 4.143 8 N -0.536 5.536 9 Si 0.722 3.278 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.204 1.204 13 N -0.309 5.309 14 C -0.001 4.001 15 C -0.048 4.048 16 C -0.383 4.383 17 S 0.345 5.655 18 C -0.221 4.221 19 C 0.009 3.991 20 C -0.193 4.193 21 C -0.210 4.210 22 C -0.192 4.192 23 N -0.175 5.175 24 H 0.084 0.916 25 H 0.041 0.959 26 H 0.048 0.952 27 H 0.110 0.890 28 H 0.030 0.970 29 H 0.069 0.931 30 H 0.149 0.851 31 H 0.097 0.903 32 H 0.056 0.944 33 H 0.193 0.807 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.738 3.527 -20.399 20.882 hybrid contribution -0.221 -0.779 1.545 1.744 sum -2.959 2.748 -18.854 19.282 Atomic orbital electron populations 1.21549 0.97676 0.97965 1.01180 1.22089 0.95091 1.01044 1.00192 1.19220 0.96108 0.88754 0.85112 0.94863 1.21003 1.30510 1.11491 0.89697 0.92154 1.24900 0.95582 0.95173 0.98641 1.69878 1.39219 1.24116 1.20382 0.86629 0.79630 0.80005 0.81526 1.20405 1.21511 1.20372 1.60983 1.04058 1.62989 1.02867 1.20465 0.96920 0.97186 0.85564 1.20452 0.95120 0.91912 0.97343 1.26839 1.09930 1.01970 0.99551 1.83707 1.40920 1.21472 1.19371 1.26982 1.02438 0.94894 0.97812 1.19186 0.93116 0.95988 0.90859 1.21838 0.93764 1.02578 1.01153 1.22008 1.02666 0.98610 0.97705 1.21832 1.00665 0.95542 1.01180 1.65983 1.13901 1.34921 1.02688 0.91635 0.95942 0.95161 0.88988 0.96962 0.93085 0.85070 0.90295 0.94424 0.80678 0.92446 0.91868 0.91260 0.91953 0.90940 0.91836 0.91358 0.91842 0.92658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.82 9.39 37.16 0.35 -2.47 16 2 C -0.14 -3.48 5.50 -26.73 -0.15 -3.63 16 3 C 0.22 5.41 2.33 -68.87 -0.16 5.25 16 4 H 0.03 0.91 7.86 -51.93 -0.41 0.50 16 5 C -0.49 -13.36 7.35 -34.44 -0.25 -13.61 16 6 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 7 C 0.06 1.58 5.22 -17.82 -0.09 1.49 16 8 N -0.90 -25.43 11.39 55.43 0.63 -24.80 16 9 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 N -0.68 -14.92 6.24 -109.22 -0.68 -15.60 16 14 C 0.13 2.50 5.92 -4.98 -0.03 2.47 16 15 C 0.08 1.41 6.21 -84.22 -0.52 0.89 16 16 C -0.24 -3.63 11.12 29.12 0.32 -3.30 16 17 S 0.09 1.10 21.57 -107.50 -2.32 -1.22 16 18 C 0.06 0.78 5.78 -13.46 -0.08 0.71 16 19 C 0.01 0.13 0.99 -155.66 -0.15 -0.02 16 20 C -0.13 -1.40 8.45 37.16 0.31 -1.09 16 21 C -0.15 -1.22 7.54 37.16 0.28 -0.94 16 22 C -0.13 -1.30 8.45 37.16 0.31 -0.98 16 23 N -0.46 -7.61 10.51 -8.05 -0.08 -7.69 16 24 H 0.06 1.59 7.05 -51.93 -0.37 1.22 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.03 0.63 6.42 -51.93 -0.33 0.30 16 27 H 0.09 2.46 6.25 -51.93 -0.32 2.13 16 28 H 0.01 0.27 7.24 -51.93 -0.38 -0.11 16 29 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 30 H 0.33 7.33 6.55 -39.29 -0.26 7.07 16 31 H 0.08 1.45 8.09 -51.93 -0.42 1.03 16 32 H 0.04 0.75 7.23 -51.93 -0.38 0.37 16 33 H 0.18 2.35 8.06 -52.48 -0.42 1.93 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.06 0.48 7.92 -51.93 -0.41 0.07 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.06 0.51 7.92 -51.93 -0.41 0.10 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 346.67 15.07 5.22 5.22 Total: -1.00 -28.80 346.67 -9.14 -37.94 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -7.03 Total: 4.87 kcal Atomic # 6 Polarization: -15.38 SS G_CDS: 0.14 Total: -15.24 kcal Atomic # 7 Polarization: -47.96 SS G_CDS: -0.14 Total: -48.09 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: 1.10 SS G_CDS: -2.32 Total: -1.22 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -28.80 -9.14 -37.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169280571.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.691 kcal (2) G-P(sol) polarization free energy of solvation -28.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds