Wall clock time and date at job start Tue Mar 31 2020 06:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00375 * 2 1 4 4 H 1.48503 * 109.46811 * 269.99866 * 3 2 1 5 5 H 1.48498 * 109.46921 * 29.99818 * 3 2 1 6 6 H 1.48496 * 109.47323 * 150.00072 * 3 2 1 7 7 C 1.37875 * 119.99618 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00343 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00069 * 180.02562 * 7 2 1 10 10 C 1.53004 * 109.47209 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47101 * 179.97438 * 10 9 7 12 12 N 1.46493 * 109.47127 * 179.97438 * 11 10 9 13 13 C 1.34781 * 119.99859 * 179.97438 * 12 11 10 14 14 O 1.21273 * 120.00031 * 0.02562 * 13 12 11 15 15 C 1.50699 * 119.99726 * 180.02562 * 13 12 11 16 16 N 1.46500 * 109.47163 * 180.02562 * 15 13 12 17 17 C 1.47196 * 119.78556 * 270.00019 * 16 15 13 18 18 C 1.52982 * 108.66360 * 108.04035 * 17 16 15 19 19 C 1.51776 * 110.88512 * 86.47127 * 18 17 16 20 20 C 1.51797 * 113.80884 * 292.99518 * 19 18 17 21 21 C 1.53059 * 110.74154 * 66.80523 * 20 19 18 22 22 C 1.33371 * 119.78951 * 89.99920 * 16 15 13 23 23 O 1.21273 * 119.88937 * 0.55603 * 22 16 15 24 24 H 0.97006 * 119.99506 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.47130 * 59.99430 * 9 7 2 26 26 H 1.09000 * 109.46784 * 299.99755 * 9 7 2 27 27 H 1.09000 * 109.46852 * 60.00184 * 10 9 7 28 28 H 1.09000 * 109.47145 * 299.99654 * 10 9 7 29 29 H 1.09005 * 109.46648 * 60.00097 * 11 10 9 30 30 H 1.08997 * 109.47265 * 300.00830 * 11 10 9 31 31 H 0.96999 * 120.00355 * 0.02562 * 12 11 10 32 32 H 1.08997 * 109.47495 * 60.00268 * 15 13 12 33 33 H 1.09000 * 109.47199 * 300.00116 * 15 13 12 34 34 H 1.09000 * 109.60617 * 348.28608 * 17 16 15 35 35 H 1.08995 * 109.60580 * 227.79508 * 17 16 15 36 36 H 1.09000 * 109.19832 * 326.10366 * 18 17 16 37 37 H 1.09005 * 109.15447 * 206.80667 * 18 17 16 38 38 H 1.08997 * 108.61568 * 171.87622 * 19 18 17 39 39 H 1.08996 * 108.61753 * 54.11401 * 19 18 17 40 40 H 1.09004 * 109.21915 * 306.48090 * 20 19 18 41 41 H 1.08994 * 109.22330 * 187.13540 * 20 19 18 42 42 H 1.09003 * 109.63386 * 155.38914 * 21 20 19 43 43 H 1.08999 * 109.79996 * 34.88481 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0462 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0014 9 6 3.5115 -1.1942 0.0011 10 6 4.0214 -2.6368 0.0023 11 6 5.5514 -2.6369 0.0022 12 7 6.0396 -4.0180 0.0040 13 6 7.3647 -4.2644 0.0037 14 8 8.1528 -3.3426 0.0025 15 6 7.8669 -5.6852 0.0049 16 7 9.3319 -5.6853 0.0050 17 6 10.0632 -5.6865 -1.2725 18 6 10.6961 -4.3086 -1.4755 19 6 12.0543 -4.2325 -0.8023 20 6 11.9919 -4.3008 0.7128 21 6 11.5087 -5.6780 1.1739 22 6 9.9945 -5.6844 1.1625 23 8 9.3823 -5.6937 2.2093 24 1 -0.4850 0.8401 0.0004 25 1 3.8745 -0.6801 0.8910 26 1 3.8751 -0.6806 -0.8889 27 1 3.6584 -3.1511 -0.8875 28 1 3.6577 -3.1500 0.8925 29 1 5.9147 -2.1223 0.8919 30 1 5.9147 -2.1237 -0.8881 31 1 5.4093 -4.7553 0.0045 32 1 7.5033 -6.1999 -0.8844 33 1 7.5039 -6.1982 0.8955 34 1 9.3723 -5.8955 -2.0892 35 1 10.8435 -6.4471 -1.2466 36 1 10.0420 -3.5475 -1.0500 37 1 10.8144 -4.1231 -2.5431 38 1 12.5327 -3.2960 -1.0890 39 1 12.6681 -5.0579 -1.1629 40 1 11.3042 -3.5382 1.0784 41 1 12.9847 -4.1134 1.1217 42 1 11.8681 -5.8729 2.1843 43 1 11.8833 -6.4462 0.4974 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171594964.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:28 Heat of formation + Delta-G solvation = -92.414260 kcal Electronic energy + Delta-G solvation = -22344.068746 eV Core-core repulsion = 19002.394153 eV Total energy + Delta-G solvation = -3341.674593 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.84223 -39.11544 -36.89231 -35.59332 -34.76323 -33.32258 -31.57000 -31.28252 -29.35870 -27.19576 -25.87875 -24.16879 -22.78875 -20.94544 -20.78858 -20.14179 -19.01543 -17.56185 -17.33321 -16.84574 -16.68094 -15.47911 -15.39375 -15.18548 -14.45791 -14.36693 -14.17987 -13.98168 -13.87703 -13.66739 -13.30156 -12.93656 -12.71045 -12.48842 -12.34542 -11.97052 -11.89538 -11.63015 -11.10617 -11.09087 -11.01341 -10.92106 -10.88696 -10.21598 -10.00409 -9.88633 -9.82014 -9.69872 -9.23750 -8.87316 -8.86177 -8.56121 -6.06941 -4.05642 2.39932 2.67953 2.70811 3.30617 3.38293 3.43000 3.45265 4.19980 4.43745 4.43965 4.48903 4.54326 4.76775 4.86011 4.98427 5.01413 5.08474 5.12017 5.23670 5.27201 5.38970 5.47153 5.55416 5.64538 5.65433 5.70149 5.81898 5.93664 6.00911 6.09976 6.19647 6.38389 6.44184 6.70079 6.79142 7.13885 7.22020 7.35642 7.60496 7.76001 8.00340 8.32254 8.49816 8.96912 9.55391 11.06335 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.030635 B = 0.002958 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.760918 B = 9463.351118 C = 9762.311514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.067 3.933 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.522 4.522 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.113 4.113 11 C 0.116 3.884 12 N -0.725 5.725 13 C 0.493 3.507 14 O -0.534 6.534 15 C 0.091 3.909 16 N -0.591 5.591 17 C 0.115 3.885 18 C -0.156 4.156 19 C -0.117 4.117 20 C -0.114 4.114 21 C -0.134 4.134 22 C 0.521 3.479 23 O -0.547 6.547 24 H 0.263 0.737 25 H 0.018 0.982 26 H 0.014 0.986 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.400 0.600 32 H 0.107 0.893 33 H 0.113 0.887 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.098 0.902 37 H 0.071 0.929 38 H 0.064 0.936 39 H 0.058 0.942 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.095 0.905 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.827 -14.894 -4.065 29.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.560 4.560 8 H 0.090 0.910 9 C -0.049 4.049 10 C -0.151 4.151 11 C -0.007 4.007 12 N -0.376 5.376 13 C 0.277 3.723 14 O -0.411 6.411 15 C -0.036 4.036 16 N -0.323 5.323 17 C -0.007 4.007 18 C -0.194 4.194 19 C -0.154 4.154 20 C -0.152 4.152 21 C -0.174 4.174 22 C 0.310 3.690 23 O -0.424 6.424 24 H 0.073 0.927 25 H 0.037 0.963 26 H 0.032 0.968 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.234 0.766 32 H 0.125 0.875 33 H 0.131 0.869 34 H 0.102 0.898 35 H 0.095 0.905 36 H 0.117 0.883 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.114 0.886 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 24.933 -14.104 -3.512 28.860 hybrid contribution -0.088 0.652 -0.140 0.672 sum 24.844 -13.452 -3.652 28.488 Atomic orbital electron populations 1.69916 1.06315 1.26957 1.51012 1.25028 0.94750 0.99238 0.94460 0.86774 0.80426 0.83535 0.78563 1.20250 1.21335 1.18916 1.21099 0.89310 0.94520 1.51085 0.90993 1.19501 0.97273 0.91497 0.96620 1.21705 0.90630 1.01034 1.01739 1.21628 0.96112 0.81152 1.01795 1.46132 1.06582 1.10046 1.74881 1.21077 0.82774 0.91880 0.76544 1.90625 1.55172 1.46106 1.49200 1.21390 0.81662 0.94942 1.05573 1.47445 1.05071 1.72870 1.06939 1.21859 0.96288 0.97899 0.84683 1.21976 0.97675 0.98568 1.01150 1.21118 0.97245 1.02242 0.94805 1.21224 1.01953 0.95862 0.96189 1.21971 0.91444 0.99655 1.04325 1.20557 0.90667 0.74890 0.82917 1.90722 1.70172 1.49914 1.31620 0.92689 0.96336 0.96794 0.92125 0.92052 0.91907 0.91890 0.76645 0.87507 0.86880 0.89770 0.90461 0.88335 0.91038 0.91772 0.92283 0.91017 0.90839 0.88605 0.89382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.86 13.96 55.43 0.77 -27.09 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 21.87 27.47 -169.99 -4.67 17.20 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.26 -6.37 6.54 56.52 0.37 -6.00 16 7 C -0.52 -14.78 9.66 -34.44 -0.33 -15.11 16 8 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 9 C -0.01 -0.26 4.04 -27.88 -0.11 -0.37 16 10 C -0.11 -2.11 5.27 -26.73 -0.14 -2.25 16 11 C 0.12 1.93 5.67 -4.04 -0.02 1.91 16 12 N -0.72 -9.74 5.56 -60.30 -0.33 -10.07 16 13 C 0.49 6.86 7.89 -10.98 -0.09 6.77 16 14 O -0.53 -9.31 14.22 5.56 0.08 -9.23 16 15 C 0.09 0.92 5.87 -5.19 -0.03 0.89 16 16 N -0.59 -6.05 1.97 -174.61 -0.34 -6.40 16 17 C 0.12 0.81 5.91 -3.67 -0.02 0.79 16 18 C -0.16 -1.29 5.73 -27.36 -0.16 -1.45 16 19 C -0.12 -0.82 5.27 -27.96 -0.15 -0.97 16 20 C -0.11 -0.95 5.67 -27.31 -0.15 -1.11 16 21 C -0.13 -1.13 5.56 -27.50 -0.15 -1.28 16 22 C 0.52 6.40 6.79 -11.25 -0.08 6.32 16 23 O -0.55 -9.10 16.59 5.56 0.09 -9.01 16 24 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 25 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 26 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 27 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 30 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.40 4.20 8.47 -40.82 -0.35 3.86 16 32 H 0.11 0.68 7.85 -51.93 -0.41 0.27 16 33 H 0.11 1.17 7.37 -51.93 -0.38 0.79 16 34 H 0.08 0.47 7.77 -51.93 -0.40 0.06 16 35 H 0.08 0.38 6.71 -51.93 -0.35 0.03 16 36 H 0.10 1.22 5.70 -51.93 -0.30 0.92 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.31 7.89 -51.93 -0.41 -0.10 16 40 H 0.07 0.82 7.86 -51.93 -0.41 0.41 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.10 0.79 8.13 -51.93 -0.42 0.37 16 43 H 0.09 0.51 6.79 -51.93 -0.35 0.16 16 LS Contribution 341.94 15.07 5.15 5.15 Total: -1.00 -35.94 341.94 -7.87 -43.81 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -7.09 Total: -0.34 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: -1.53 Total: -4.03 kcal Atomic # 7 Polarization: -43.65 SS G_CDS: 0.10 Total: -43.56 kcal Atomic # 8 Polarization: -18.41 SS G_CDS: 0.17 Total: -18.24 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.67 Total: 17.20 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -35.94 -7.87 -43.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171594964.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.601 kcal (2) G-P(sol) polarization free energy of solvation -35.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds