Wall clock time and date at job start Tue Mar 31 2020 05:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 119.99961 * 2 1 4 4 H 1.48502 * 109.46788 * 269.99213 * 3 2 1 5 5 H 1.48493 * 109.47316 * 29.99644 * 3 2 1 6 6 H 1.48502 * 109.47162 * 150.00269 * 3 2 1 7 7 C 1.37879 * 119.99785 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99635 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00154 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47174 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47209 * 179.97438 * 10 9 7 12 12 N 1.46496 * 109.47348 * 179.97438 * 11 10 9 13 13 C 1.34779 * 120.00118 * 180.27344 * 12 11 10 14 14 O 1.21584 * 120.00198 * 354.81348 * 13 12 11 15 15 N 1.34775 * 119.99702 * 174.80826 * 13 12 11 16 16 C 1.47132 * 121.04248 * 184.92283 * 15 13 12 17 17 C 1.52794 * 108.94311 * 232.14979 * 16 15 13 18 18 O 1.43093 * 109.41794 * 306.15451 * 17 16 15 19 19 C 1.42584 * 113.96312 * 59.98053 * 18 17 16 20 20 C 1.53375 * 113.66435 * 72.57805 * 19 18 17 21 21 C 1.53856 * 86.96057 * 89.64666 * 20 19 18 22 22 C 1.53345 * 113.71320 * 170.64732 * 19 18 17 23 23 C 1.47318 * 121.05024 * 5.21105 * 15 13 12 24 24 H 0.96998 * 119.99851 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.47478 * 59.99034 * 9 7 2 26 26 H 1.09002 * 109.46774 * 299.99648 * 9 7 2 27 27 H 1.08998 * 109.47171 * 60.00001 * 10 9 7 28 28 H 1.09002 * 109.47193 * 299.99649 * 10 9 7 29 29 H 1.09004 * 109.47079 * 59.99697 * 11 10 9 30 30 H 1.09002 * 109.46979 * 300.00053 * 11 10 9 31 31 H 0.97004 * 119.99855 * 0.02562 * 12 11 10 32 32 H 1.08997 * 109.59787 * 351.97427 * 16 15 13 33 33 H 1.09005 * 109.59368 * 112.43499 * 16 15 13 34 34 H 1.08998 * 109.56707 * 186.10775 * 17 16 15 35 35 H 1.08999 * 109.37217 * 66.08169 * 17 16 15 36 36 H 1.08999 * 113.63419 * 204.16765 * 20 19 18 37 37 H 1.09003 * 113.63757 * 335.13091 * 20 19 18 38 38 H 1.09001 * 113.60164 * 270.56080 * 21 20 19 39 39 H 1.08999 * 113.60010 * 139.68896 * 21 20 19 40 40 H 1.09002 * 113.62988 * 24.92077 * 22 19 18 41 41 H 1.09002 * 113.63007 * 155.78633 * 22 19 18 42 42 H 1.08995 * 109.74952 * 251.10164 * 23 15 13 43 43 H 1.09005 * 109.74337 * 11.82713 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 0.0012 12 7 2.4321 -6.1006 0.0006 13 6 1.9828 -7.3713 -0.0046 14 8 0.7913 -7.5952 0.0865 15 7 2.8545 -8.3938 -0.1108 16 6 2.3839 -9.7830 -0.2267 17 6 3.0848 -10.6340 0.8311 18 8 4.5012 -10.4699 0.7119 19 6 4.9454 -9.1265 0.8884 20 6 4.8758 -8.6410 2.3416 21 6 6.3078 -9.1798 2.5041 22 6 6.4695 -8.9888 0.9861 23 6 4.3084 -8.1562 -0.1081 24 1 -0.4850 0.8400 -0.0004 25 1 0.6246 -2.5571 -0.8895 26 1 0.6241 -2.5567 0.8904 27 1 2.8718 -3.6044 0.8905 28 1 2.8718 -3.6044 -0.8895 29 1 0.8532 -5.0451 -0.8886 30 1 0.8538 -5.0446 0.8914 31 1 3.3858 -5.9234 0.0002 32 1 1.3062 -9.8184 -0.0675 33 1 2.6221 -10.1681 -1.2183 34 1 2.8267 -11.6830 0.6855 35 1 2.7639 -10.3148 1.8227 36 1 4.8030 -7.5577 2.4374 37 1 4.1385 -9.1711 2.9446 38 1 6.3486 -10.2224 2.8196 39 1 6.9533 -8.5317 3.0967 40 1 7.0135 -9.7983 0.4993 41 1 6.8380 -8.0021 0.7052 42 1 4.7124 -8.3339 -1.1047 43 1 4.5132 -7.1295 0.1954 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179650738.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:00 Heat of formation + Delta-G solvation = -54.028106 kcal Electronic energy + Delta-G solvation = -22552.579902 eV Core-core repulsion = 19212.569858 eV Total energy + Delta-G solvation = -3340.010044 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.10953 -39.41335 -36.65629 -35.42523 -34.87701 -33.30262 -31.33734 -30.23369 -27.87584 -26.48107 -26.14596 -24.11246 -23.25484 -22.23967 -20.68173 -19.80794 -19.36488 -18.10650 -17.01947 -16.41479 -16.26355 -15.95913 -15.35957 -15.15991 -14.89829 -14.53426 -14.36489 -14.22716 -14.05167 -13.60457 -13.31697 -12.69941 -12.40223 -12.17518 -11.90293 -11.76060 -11.73480 -11.44254 -11.22624 -11.15125 -10.91587 -10.74651 -10.61973 -10.59538 -10.14870 -10.03220 -9.87681 -9.45673 -9.13616 -8.92845 -8.46052 -8.37930 -6.02558 -4.05759 2.53573 3.22327 3.26560 3.30066 3.36504 3.39111 3.89388 4.16695 4.27253 4.34402 4.43601 4.49198 4.71114 4.80601 4.84555 5.01030 5.14836 5.29407 5.32682 5.33210 5.41067 5.45451 5.57750 5.60463 5.66856 5.72639 5.79394 5.82340 5.94477 6.16222 6.22621 6.50282 6.60204 6.75110 6.85989 6.96893 7.00470 7.62818 7.75504 7.96174 8.00038 8.36943 8.66818 9.00880 9.58410 11.08741 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.024873 B = 0.003164 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.442917 B = 8848.766240 C = 9682.815589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.120 4.120 11 C 0.134 3.866 12 N -0.741 5.741 13 C 0.707 3.293 14 O -0.589 6.589 15 N -0.636 5.636 16 C 0.096 3.904 17 C 0.047 3.953 18 O -0.354 6.354 19 C 0.079 3.921 20 C -0.161 4.161 21 C -0.134 4.134 22 C -0.122 4.122 23 C 0.098 3.902 24 H 0.261 0.739 25 H 0.019 0.981 26 H 0.019 0.981 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.392 0.608 32 H 0.104 0.896 33 H 0.071 0.929 34 H 0.107 0.893 35 H 0.057 0.943 36 H 0.090 0.910 37 H 0.071 0.929 38 H 0.083 0.917 39 H 0.071 0.929 40 H 0.080 0.920 41 H 0.098 0.902 42 H 0.076 0.924 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.570 -21.686 1.992 25.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.158 4.158 11 C 0.011 3.989 12 N -0.397 5.397 13 C 0.408 3.592 14 O -0.467 6.467 15 N -0.375 5.375 16 C -0.028 4.028 17 C -0.031 4.031 18 O -0.272 6.272 19 C 0.038 3.962 20 C -0.199 4.199 21 C -0.171 4.171 22 C -0.160 4.160 23 C -0.025 4.025 24 H 0.071 0.929 25 H 0.038 0.962 26 H 0.038 0.962 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.227 0.773 32 H 0.122 0.878 33 H 0.090 0.910 34 H 0.125 0.875 35 H 0.076 0.924 36 H 0.109 0.891 37 H 0.090 0.910 38 H 0.102 0.898 39 H 0.090 0.910 40 H 0.099 0.901 41 H 0.116 0.884 42 H 0.094 0.906 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 11.610 -21.840 2.005 24.816 hybrid contribution 0.672 1.246 0.004 1.416 sum 12.283 -20.594 2.009 24.062 Atomic orbital electron populations 1.69968 1.06060 1.26697 1.50521 1.25033 0.94859 0.99305 0.95277 0.86579 0.79792 0.83433 0.78094 1.20659 1.21203 1.19895 1.21197 0.92972 0.90935 1.50977 0.92663 1.19024 0.93838 0.90772 0.97713 1.21890 0.99810 0.93331 1.00775 1.21541 0.91315 0.84129 1.01949 1.45530 1.10465 1.04426 1.79232 1.15867 0.84783 0.80734 0.77790 1.90906 1.14204 1.83682 1.57945 1.47282 1.05236 1.06102 1.78878 1.21982 1.01428 0.80083 0.99293 1.22948 0.80827 1.00669 0.98615 1.87907 1.22178 1.24803 1.92338 1.22590 0.95742 0.83498 0.94346 1.23466 0.98093 1.01783 0.96539 1.22787 0.96528 1.01748 0.96054 1.22932 0.92700 1.03137 0.97190 1.22194 0.80661 0.99580 1.00101 0.92914 0.96243 0.96214 0.92803 0.92787 0.91957 0.91831 0.77271 0.87783 0.91031 0.87462 0.92444 0.89106 0.90983 0.89820 0.91012 0.90142 0.88362 0.90588 0.89241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.80 13.29 55.43 0.74 -26.06 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 6 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.52 -14.54 9.11 -34.44 -0.31 -14.85 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.02 0.61 4.97 -27.89 -0.14 0.47 16 10 C -0.12 -2.34 5.27 -26.73 -0.14 -2.48 16 11 C 0.13 2.41 5.68 -4.04 -0.02 2.38 16 12 N -0.74 -11.12 5.46 -65.23 -0.36 -11.48 16 13 C 0.71 11.28 8.31 -86.92 -0.72 10.55 16 14 O -0.59 -11.72 15.82 5.29 0.08 -11.64 16 15 N -0.64 -7.76 3.03 -178.38 -0.54 -8.30 16 16 C 0.10 1.01 6.58 -3.80 -0.03 0.98 16 17 C 0.05 0.41 6.86 37.05 0.25 0.67 16 18 O -0.35 -3.50 10.44 -35.23 -0.37 -3.87 16 19 C 0.08 0.70 1.12 -90.26 -0.10 0.60 16 20 C -0.16 -1.40 7.23 -26.09 -0.19 -1.59 16 21 C -0.13 -0.97 8.03 -25.84 -0.21 -1.18 16 22 C -0.12 -0.85 7.47 -26.11 -0.20 -1.05 16 23 C 0.10 0.92 5.69 -3.60 -0.02 0.90 16 24 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 25 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 28 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.39 4.80 6.06 -40.82 -0.25 4.55 16 32 H 0.10 1.22 7.05 -51.93 -0.37 0.85 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.54 7.11 -51.93 -0.37 0.17 16 36 H 0.09 0.79 7.95 -51.93 -0.41 0.38 16 37 H 0.07 0.69 7.18 -51.93 -0.37 0.32 16 38 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.10 0.55 8.09 -51.93 -0.42 0.13 16 42 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.09 0.75 5.64 -51.93 -0.29 0.46 16 LS Contribution 343.51 15.07 5.18 5.18 Total: -1.00 -33.16 343.51 -9.30 -42.46 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -7.10 Total: 0.40 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: -1.92 Total: -3.08 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: -0.16 Total: -45.84 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: -0.28 Total: -15.51 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.16 -9.30 -42.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179650738.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.565 kcal (2) G-P(sol) polarization free energy of solvation -33.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds