Wall clock time and date at job start Tue Mar 31 2020 05:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47270 * 2 1 4 4 C 1.53001 * 109.46863 * 120.00140 * 2 1 3 5 5 N 1.46898 * 109.47114 * 294.99968 * 4 2 1 6 6 C 1.46900 * 110.99896 * 180.02562 * 5 4 2 7 7 C 1.53002 * 109.47040 * 180.02562 * 6 5 4 8 8 C 1.53006 * 109.46723 * 299.99361 * 7 6 5 9 9 C 1.52995 * 109.47368 * 59.99678 * 7 6 5 10 10 C 1.53001 * 109.46957 * 179.97438 * 7 6 5 11 11 C 1.50696 * 109.47194 * 179.97438 * 10 7 6 12 12 H 1.08005 * 120.00015 * 0.02562 * 11 10 7 13 13 C 1.37874 * 120.00174 * 179.97438 * 11 10 7 14 14 N 1.31517 * 120.00172 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00102 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.46870 * 60.00210 * 15 13 11 17 17 H 1.48495 * 109.47257 * 179.97438 * 15 13 11 18 18 H 1.48490 * 109.47121 * 299.99885 * 15 13 11 19 19 C 1.50701 * 109.47052 * 240.00227 * 2 1 3 20 20 N 1.29022 * 124.91373 * 299.69734 * 19 2 1 21 21 C 1.31789 * 117.12256 * 180.26689 * 20 19 2 22 22 C 1.33637 * 114.50004 * 359.97438 * 21 20 19 23 23 S 1.70978 * 124.91683 * 120.00098 * 19 2 1 24 24 H 1.09001 * 109.47205 * 59.99632 * 1 2 3 25 25 H 1.08998 * 109.47270 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47298 * 299.99996 * 1 2 3 27 27 H 1.09000 * 109.47257 * 55.00261 * 4 2 1 28 28 H 1.09001 * 109.46952 * 174.99870 * 4 2 1 29 29 H 1.00892 * 110.99917 * 56.04659 * 5 4 2 30 30 H 1.09000 * 109.46615 * 299.99974 * 6 5 4 31 31 H 1.09004 * 109.47306 * 59.99682 * 6 5 4 32 32 H 1.08997 * 109.46560 * 60.00527 * 8 7 6 33 33 H 1.09006 * 109.46534 * 180.02562 * 8 7 6 34 34 H 1.08990 * 109.47210 * 300.00241 * 8 7 6 35 35 H 1.09000 * 109.46710 * 59.99956 * 9 7 6 36 36 H 1.09001 * 109.46948 * 180.02562 * 9 7 6 37 37 H 1.09003 * 109.47031 * 300.00356 * 9 7 6 38 38 H 1.09000 * 109.47121 * 300.00044 * 10 7 6 39 39 H 1.09004 * 109.47338 * 59.99526 * 10 7 6 40 40 H 0.96995 * 120.00026 * 180.02562 * 14 13 11 41 41 H 1.08002 * 122.74893 * 180.02562 * 21 20 19 42 42 H 1.07998 * 126.03336 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.6513 0.0374 2.4456 6 6 2.1257 -0.6266 3.6671 7 6 1.7022 0.1908 4.8892 8 6 2.3106 1.5919 4.8013 9 6 0.1765 0.2987 4.9270 10 6 2.1957 -0.5011 6.1615 11 6 1.7792 0.3042 7.3652 12 1 1.2182 1.2180 7.2357 13 6 2.1134 -0.1259 8.6317 14 7 2.7952 -1.2394 8.7895 15 14 1.5977 0.8728 10.1237 16 1 0.1169 0.9796 10.1602 17 1 2.0755 0.2006 11.3586 18 1 2.1901 2.2317 10.0385 19 6 2.0323 -0.7104 -1.2305 20 7 1.7843 -1.9417 -1.5253 21 6 2.3074 -2.4096 -2.6407 22 6 3.0369 -1.5234 -3.3251 23 16 3.0195 -0.0033 -2.4343 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.6054 -1.7199 1.2951 28 1 3.1263 -0.7995 1.2056 29 1 0.6529 0.1792 2.4753 30 1 1.6919 -1.6247 3.7299 31 1 3.2126 -0.7039 3.6400 32 1 1.9587 2.0845 3.8949 33 1 2.0093 2.1741 5.6722 34 1 3.3975 1.5150 4.7744 35 1 -0.2568 -0.6995 4.9896 36 1 -0.1251 0.8814 5.7974 37 1 -0.1754 0.7913 4.0205 38 1 1.7620 -1.4992 6.2239 39 1 3.2827 -0.5784 6.1348 40 1 3.0300 -1.5422 9.6806 41 1 2.1581 -3.4258 -2.9748 42 1 3.5477 -1.7069 -4.2588 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184292247.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:06 Heat of formation + Delta-G solvation = 20.461522 kcal Electronic energy + Delta-G solvation = -19802.432018 eV Core-core repulsion = 16908.404957 eV Total energy + Delta-G solvation = -2894.027060 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.99876 -37.87681 -35.89110 -32.96993 -31.76244 -29.60141 -27.13367 -26.39396 -26.30512 -25.70620 -24.17750 -22.36400 -21.60130 -19.43488 -18.30870 -17.74416 -16.24670 -15.83523 -15.76710 -14.98290 -14.82813 -14.42505 -14.12002 -13.90352 -13.49184 -13.18979 -12.97171 -12.77003 -12.40001 -11.96957 -11.80881 -11.74514 -11.72988 -11.28018 -11.13816 -10.91277 -10.81717 -10.75617 -10.45855 -10.22949 -10.11955 -9.78521 -9.65151 -9.62531 -9.14483 -8.97420 -8.80223 -8.28925 -8.08312 -5.93557 -3.93735 0.48079 1.12956 1.52353 2.62586 3.36452 3.41085 3.43188 3.87995 4.41760 4.52716 4.81203 4.86500 4.91593 4.97199 5.24125 5.32423 5.42093 5.56765 5.67063 5.73061 5.79166 5.86058 5.87708 5.97126 6.03774 6.16342 6.29827 6.36731 6.53945 6.68757 6.81710 6.85662 7.23409 7.23950 7.29042 7.41061 7.53349 7.68715 7.73978 7.88944 8.06828 8.51116 9.11536 9.68885 11.18131 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.041783 B = 0.002824 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.975159 B = 9913.655580 C =10042.029594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.013 4.013 3 H 0.099 0.901 4 C 0.072 3.928 5 N -0.687 5.687 6 C 0.071 3.929 7 C -0.058 4.058 8 C -0.116 4.116 9 C -0.129 4.129 10 C 0.034 3.966 11 C -0.507 4.507 12 H 0.059 0.941 13 C 0.054 3.946 14 N -0.898 5.898 15 Si 0.888 3.112 16 H -0.278 1.278 17 H -0.289 1.289 18 H -0.277 1.277 19 C 0.067 3.933 20 N -0.473 5.473 21 C 0.041 3.959 22 C -0.269 4.269 23 S 0.117 5.883 24 H 0.055 0.945 25 H 0.064 0.936 26 H 0.071 0.929 27 H 0.038 0.962 28 H 0.069 0.931 29 H 0.339 0.661 30 H 0.024 0.976 31 H 0.066 0.934 32 H 0.042 0.958 33 H 0.054 0.946 34 H 0.039 0.961 35 H 0.040 0.960 36 H 0.064 0.936 37 H 0.033 0.967 38 H 0.012 0.988 39 H 0.015 0.985 40 H 0.259 0.741 41 H 0.174 0.826 42 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.628 1.696 -23.989 24.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.036 4.036 3 H 0.117 0.883 4 C -0.059 4.059 5 N -0.320 5.320 6 C -0.058 4.058 7 C -0.059 4.059 8 C -0.173 4.173 9 C -0.186 4.186 10 C -0.004 4.004 11 C -0.545 4.545 12 H 0.077 0.923 13 C -0.146 4.146 14 N -0.538 5.538 15 Si 0.716 3.284 16 H -0.204 1.204 17 H -0.215 1.215 18 H -0.203 1.203 19 C -0.212 4.212 20 N -0.187 5.187 21 C -0.110 4.110 22 C -0.408 4.408 23 S 0.372 5.628 24 H 0.075 0.925 25 H 0.083 0.917 26 H 0.090 0.910 27 H 0.057 0.943 28 H 0.088 0.912 29 H 0.159 0.841 30 H 0.043 0.957 31 H 0.084 0.916 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.083 0.917 37 H 0.052 0.948 38 H 0.031 0.969 39 H 0.033 0.967 40 H 0.069 0.931 41 H 0.191 0.809 42 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -0.887 2.672 -23.707 23.873 hybrid contribution -0.799 -1.372 0.511 1.667 sum -1.686 1.301 -23.196 23.294 Atomic orbital electron populations 1.21816 0.92889 1.02962 1.02327 1.19904 0.96874 0.98608 0.88192 0.88295 1.21845 1.00535 0.94960 0.88542 1.60597 1.19829 1.50094 1.01448 1.22105 0.99859 0.95073 0.88762 1.20632 0.94839 0.95806 0.94601 1.21599 0.99459 0.96198 1.00056 1.21772 0.96006 1.00620 1.00237 1.19119 0.96145 0.95188 0.89919 1.21203 1.34391 1.08171 0.90757 0.92335 1.25017 0.95474 0.95106 0.99001 1.69957 1.39476 1.21934 1.22430 0.86726 0.78885 0.80355 0.82438 1.20366 1.21468 1.20311 1.27194 0.99612 0.93222 1.01171 1.66233 1.23404 1.11753 1.17271 1.21843 0.96967 1.01523 0.90705 1.27064 1.10076 0.96392 1.07247 1.84100 1.47490 1.14884 1.16343 0.92547 0.91685 0.91022 0.94334 0.91234 0.84096 0.95749 0.91572 0.93873 0.92711 0.94193 0.94077 0.91702 0.94848 0.96919 0.96699 0.93120 0.80875 0.80733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 8.94 37.16 0.33 -1.05 16 2 C -0.01 -0.14 3.03 -91.77 -0.28 -0.42 16 3 H 0.10 0.99 8.12 -51.93 -0.42 0.57 16 4 C 0.07 0.93 5.12 -3.82 -0.02 0.91 16 5 N -0.69 -9.81 5.71 -113.78 -0.65 -10.46 16 6 C 0.07 1.23 4.65 -3.82 -0.02 1.21 16 7 C -0.06 -1.16 0.60 -154.51 -0.09 -1.26 16 8 C -0.12 -2.23 8.07 37.16 0.30 -1.93 16 9 C -0.13 -2.38 7.89 37.16 0.29 -2.09 16 10 C 0.03 0.86 4.04 -27.88 -0.11 0.74 16 11 C -0.51 -13.90 7.65 -34.44 -0.26 -14.17 16 12 H 0.06 1.55 5.68 -52.48 -0.30 1.26 16 13 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 14 N -0.90 -27.04 13.29 55.43 0.74 -26.30 16 15 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 16 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 17 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 C 0.07 0.73 5.91 -13.46 -0.08 0.65 16 20 N -0.47 -5.64 10.53 -11.86 -0.12 -5.76 16 21 C 0.04 0.39 11.35 -19.18 -0.22 0.17 16 22 C -0.27 -2.19 11.37 29.12 0.33 -1.86 16 23 S 0.12 1.04 23.17 -107.50 -2.49 -1.45 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.07 0.67 6.68 -51.93 -0.35 0.33 16 27 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.34 4.57 5.02 -39.30 -0.20 4.37 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.04 0.74 7.60 -51.93 -0.39 0.34 16 33 H 0.05 1.13 6.62 -51.93 -0.34 0.78 16 34 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.06 1.30 6.62 -51.93 -0.34 0.95 16 37 H 0.03 0.51 6.57 -51.93 -0.34 0.17 16 38 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 41 H 0.17 1.23 8.06 -52.49 -0.42 0.81 16 42 H 0.18 0.93 8.06 -52.49 -0.42 0.51 16 LS Contribution 346.37 15.07 5.22 5.22 Total: -1.00 -30.21 346.37 -9.15 -39.36 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -6.90 Total: 0.38 kcal Atomic # 6 Polarization: -17.70 SS G_CDS: 0.08 Total: -17.63 kcal Atomic # 7 Polarization: -42.49 SS G_CDS: -0.04 Total: -42.53 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: 1.04 SS G_CDS: -2.49 Total: -1.45 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.21 -9.15 -39.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184292247.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.819 kcal (2) G-P(sol) polarization free energy of solvation -30.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds