Wall clock time and date at job start Tue Mar 31 2020 05:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46837 * 2 1 4 4 N 1.46901 * 109.47021 * 120.00193 * 2 1 3 5 5 C 1.46905 * 110.99870 * 274.99736 * 4 2 1 6 6 C 1.52993 * 109.47039 * 180.02562 * 5 4 2 7 7 C 1.50698 * 109.47393 * 180.02562 * 6 5 4 8 8 H 1.08010 * 119.99765 * 359.97438 * 7 6 5 9 9 C 1.37872 * 120.00736 * 179.97438 * 7 6 5 10 10 N 1.31523 * 119.99548 * 359.97438 * 9 7 6 11 11 Si 1.86793 * 120.00627 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47294 * 0.02562 * 11 9 7 13 13 H 1.48503 * 109.47394 * 119.99957 * 11 9 7 14 14 H 1.48499 * 109.47384 * 240.00136 * 11 9 7 15 15 C 1.50693 * 109.46915 * 240.00078 * 2 1 3 16 16 N 1.29031 * 124.91985 * 104.72209 * 15 2 1 17 17 C 1.31775 * 117.12740 * 179.81199 * 16 15 2 18 18 C 1.50703 * 122.75172 * 180.22649 * 17 16 15 19 19 C 1.52998 * 109.47162 * 185.24271 * 18 17 16 20 20 C 1.52999 * 109.46749 * 305.24227 * 18 17 16 21 21 C 1.52995 * 109.47053 * 65.24073 * 18 17 16 22 22 C 1.33643 * 114.49939 * 0.47282 * 17 16 15 23 23 S 1.70983 * 124.91658 * 285.02351 * 15 2 1 24 24 H 1.09007 * 109.47106 * 300.00284 * 1 2 3 25 25 H 1.08993 * 109.47190 * 59.99909 * 1 2 3 26 26 H 1.08996 * 109.47234 * 180.02562 * 1 2 3 27 27 H 1.00901 * 111.00067 * 38.94911 * 4 2 1 28 28 H 1.09001 * 109.46798 * 300.00327 * 5 4 2 29 29 H 1.08998 * 109.46961 * 60.00043 * 5 4 2 30 30 H 1.09001 * 109.47393 * 299.99719 * 6 5 4 31 31 H 1.08998 * 109.47408 * 60.00073 * 6 5 4 32 32 H 0.97002 * 119.99722 * 180.02562 * 10 9 7 33 33 H 1.09001 * 109.46886 * 59.99934 * 19 18 17 34 34 H 1.09002 * 109.47329 * 179.97438 * 19 18 17 35 35 H 1.08995 * 109.47238 * 300.00236 * 19 18 17 36 36 H 1.09003 * 109.47167 * 59.99904 * 20 18 17 37 37 H 1.09004 * 109.47408 * 179.97438 * 20 18 17 38 38 H 1.09001 * 109.47409 * 300.00133 * 20 18 17 39 39 H 1.08997 * 109.47229 * 60.00716 * 21 18 17 40 40 H 1.09004 * 109.47380 * 180.02562 * 21 18 17 41 41 H 1.08994 * 109.47433 * 300.00296 * 21 18 17 42 42 H 1.07996 * 126.03513 * 179.72085 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0825 0.2226 2.3469 6 6 2.5962 -0.5329 3.5741 7 6 2.6601 0.4056 4.7515 8 1 2.3643 1.4380 4.6358 9 6 3.0962 -0.0533 5.9762 10 7 3.4559 -1.3105 6.1172 11 14 3.1760 1.1102 7.4353 12 1 2.7198 2.4602 7.0175 13 1 2.2967 0.6049 8.5202 14 1 4.5744 1.1904 7.9286 15 6 2.0323 -0.7104 -1.2304 16 7 2.5320 -0.1276 -2.2675 17 6 2.9278 -0.9005 -3.2587 18 6 3.5337 -0.3548 -4.5261 19 6 3.7603 -1.4987 -5.5166 20 6 2.5842 0.6738 -5.1435 21 6 4.8716 0.3143 -4.2049 22 6 2.7432 -2.2075 -3.0500 23 16 2.0158 -2.4050 -1.4574 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.4495 -1.4979 1.4100 28 1 2.7589 1.0462 2.1182 29 1 1.0871 0.6163 2.5525 30 1 1.9202 -1.3567 3.8030 31 1 3.5917 -0.9263 3.3683 32 1 3.7624 -1.6335 6.9790 33 1 2.8072 -1.9753 -5.7454 34 1 4.1982 -1.1040 -6.4335 35 1 4.4367 -2.2316 -5.0767 36 1 2.4227 1.4887 -4.4378 37 1 3.0226 1.0689 -6.0600 38 1 1.6310 0.1972 -5.3723 39 1 5.5480 -0.4186 -3.7651 40 1 5.3096 0.7093 -5.1215 41 1 4.7101 1.1291 -3.4992 42 1 2.9948 -3.0023 -3.7366 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184473057.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:15 Heat of formation + Delta-G solvation = 17.085936 kcal Electronic energy + Delta-G solvation = -19674.936349 eV Core-core repulsion = 16780.762913 eV Total energy + Delta-G solvation = -2894.173437 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.23688 -37.31306 -35.86049 -33.32020 -31.32944 -29.50848 -27.94389 -27.38525 -27.34936 -25.27835 -24.06744 -22.33158 -20.93047 -20.17791 -18.80524 -17.26622 -16.32511 -15.95860 -15.22462 -14.85344 -14.51670 -14.46480 -14.30371 -13.90626 -13.72172 -13.19006 -12.71787 -12.65229 -12.40639 -12.35787 -12.22589 -12.08083 -11.80930 -11.71058 -11.31950 -11.11909 -11.07543 -11.05655 -10.96355 -10.74577 -10.55003 -10.08933 -9.52611 -9.41810 -9.24084 -9.15270 -8.57949 -8.37292 -7.98420 -6.00990 -4.03637 0.85887 1.53888 1.95048 2.88719 3.30866 3.38383 3.42255 3.90511 4.43183 4.58250 4.69447 4.80939 4.86667 5.12948 5.15660 5.19657 5.34871 5.35456 5.38393 5.48272 5.52443 5.61161 5.70690 5.75196 5.78552 5.84828 5.87335 5.91838 6.07260 6.17535 6.19463 6.28359 6.30159 6.37339 6.92084 7.33046 7.66498 7.73959 7.87507 7.90248 8.04620 8.40738 9.03639 9.60365 11.10451 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.028512 B = 0.003140 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.811418 B = 8915.742479 C = 9043.811666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.153 3.847 3 H 0.105 0.895 4 N -0.684 5.684 5 C 0.069 3.931 6 C 0.025 3.975 7 C -0.521 4.521 8 H 0.055 0.945 9 C 0.058 3.942 10 N -0.893 5.893 11 Si 0.893 3.107 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.284 1.284 15 C 0.084 3.916 16 N -0.475 5.475 17 C 0.083 3.917 18 C 0.008 3.992 19 C -0.143 4.143 20 C -0.134 4.134 21 C -0.136 4.136 22 C -0.280 4.280 23 S 0.135 5.865 24 H 0.072 0.928 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.339 0.661 28 H 0.062 0.938 29 H 0.022 0.978 30 H 0.015 0.985 31 H 0.026 0.974 32 H 0.260 0.740 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.056 0.944 38 H 0.051 0.949 39 H 0.054 0.946 40 H 0.058 0.942 41 H 0.064 0.936 42 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.343 -0.989 -22.904 23.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.039 3.961 3 H 0.123 0.877 4 N -0.316 5.316 5 C -0.059 4.059 6 C -0.012 4.012 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.144 4.144 10 N -0.532 5.532 11 Si 0.720 3.280 12 H -0.197 1.197 13 H -0.210 1.210 14 H -0.210 1.210 15 C -0.194 4.194 16 N -0.189 5.189 17 C -0.050 4.050 18 C 0.005 3.995 19 C -0.201 4.201 20 C -0.191 4.191 21 C -0.194 4.194 22 C -0.419 4.419 23 S 0.391 5.609 24 H 0.091 0.909 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.158 0.842 28 H 0.080 0.920 29 H 0.040 0.960 30 H 0.033 0.967 31 H 0.044 0.956 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -2.912 -1.323 -22.290 22.518 hybrid contribution -0.414 0.850 0.355 1.011 sum -3.327 -0.472 -21.935 22.191 Atomic orbital electron populations 1.22505 0.95422 1.02591 1.03065 1.20015 0.92606 0.97767 0.85726 0.87702 1.60605 1.56372 1.10498 1.04079 1.22218 0.98652 0.95116 0.89894 1.19074 0.97101 0.95341 0.89716 1.21191 1.43956 0.96422 0.94426 0.92642 1.25002 0.95358 0.95113 0.98901 1.69987 1.44458 1.14357 1.24380 0.86529 0.77682 0.81124 0.82616 1.19743 1.21039 1.20978 1.27111 1.00185 0.94200 0.97952 1.65970 1.13700 1.38767 1.00507 1.20067 1.00412 0.88706 0.95839 1.19095 0.95385 0.95548 0.89451 1.21951 1.01863 0.97743 0.98503 1.21792 0.98361 0.98646 1.00332 1.21818 0.95046 1.00883 1.01608 1.26838 1.12798 1.00843 1.01433 1.84005 1.56437 1.09348 1.11063 0.90939 0.91882 0.92204 0.84245 0.91987 0.96008 0.96703 0.95580 0.93029 0.92335 0.91902 0.92218 0.91591 0.92448 0.92971 0.92695 0.92331 0.91701 0.81061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.20 9.14 37.16 0.34 -1.86 16 2 C 0.15 2.29 3.10 -68.87 -0.21 2.07 16 3 H 0.11 1.65 7.80 -51.93 -0.40 1.24 16 4 N -0.68 -11.95 6.04 -107.95 -0.65 -12.60 16 5 C 0.07 1.41 5.42 -3.82 -0.02 1.39 16 6 C 0.03 0.65 5.23 -27.89 -0.15 0.50 16 7 C -0.52 -14.66 9.11 -34.44 -0.31 -14.98 16 8 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 9 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 10 N -0.89 -26.82 13.29 55.43 0.74 -26.08 16 11 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 12 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 13 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 14 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 15 C 0.08 1.25 6.32 -13.46 -0.09 1.17 16 16 N -0.48 -7.13 10.34 -8.06 -0.08 -7.21 16 17 C 0.08 1.07 5.29 -84.23 -0.45 0.63 16 18 C 0.01 0.08 0.98 -155.66 -0.15 -0.07 16 19 C -0.14 -1.14 7.27 37.16 0.27 -0.87 16 20 C -0.13 -1.29 8.37 37.16 0.31 -0.98 16 21 C -0.14 -1.40 8.46 37.15 0.31 -1.09 16 22 C -0.28 -3.35 10.13 29.12 0.30 -3.06 16 23 S 0.14 1.76 22.96 -107.50 -2.47 -0.71 16 24 H 0.07 0.91 7.45 -51.92 -0.39 0.53 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 27 H 0.34 5.65 8.47 -39.29 -0.33 5.31 16 28 H 0.06 1.29 8.06 -51.93 -0.42 0.87 16 29 H 0.02 0.43 7.44 -51.93 -0.39 0.04 16 30 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 33 H 0.06 0.44 7.93 -51.93 -0.41 0.03 16 34 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.46 7.53 -51.93 -0.39 0.07 16 36 H 0.07 0.73 8.07 -51.93 -0.42 0.31 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.17 1.61 6.78 -52.49 -0.36 1.26 16 LS Contribution 354.75 15.07 5.35 5.35 Total: -1.00 -30.45 354.75 -9.36 -39.81 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -7.28 Total: 0.43 kcal Atomic # 6 Polarization: -15.64 SS G_CDS: 0.06 Total: -15.58 kcal Atomic # 7 Polarization: -45.90 SS G_CDS: 0.00 Total: -45.90 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: 1.76 SS G_CDS: -2.47 Total: -0.71 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.45 -9.36 -39.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184473057.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.893 kcal (2) G-P(sol) polarization free energy of solvation -30.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds