Wall clock time and date at job start Tue Mar 31 2020 05:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46837 * 2 1 4 4 N 1.46901 * 109.47021 * 120.00193 * 2 1 3 5 5 C 1.46905 * 110.99870 * 274.99736 * 4 2 1 6 6 C 1.52993 * 109.47039 * 180.02562 * 5 4 2 7 7 C 1.50698 * 109.47393 * 180.02562 * 6 5 4 8 8 H 1.08010 * 119.99765 * 359.97438 * 7 6 5 9 9 C 1.37872 * 120.00736 * 179.97438 * 7 6 5 10 10 N 1.31523 * 119.99548 * 359.97438 * 9 7 6 11 11 Si 1.86793 * 120.00627 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47294 * 0.02562 * 11 9 7 13 13 H 1.48503 * 109.47394 * 119.99957 * 11 9 7 14 14 H 1.48499 * 109.47384 * 240.00136 * 11 9 7 15 15 C 1.50693 * 109.46915 * 240.00078 * 2 1 3 16 16 N 1.29031 * 124.91985 * 104.72209 * 15 2 1 17 17 C 1.31775 * 117.12740 * 179.81199 * 16 15 2 18 18 C 1.50703 * 122.75172 * 180.22649 * 17 16 15 19 19 C 1.52998 * 109.47162 * 185.24271 * 18 17 16 20 20 C 1.52999 * 109.46749 * 305.24227 * 18 17 16 21 21 C 1.52995 * 109.47053 * 65.24073 * 18 17 16 22 22 C 1.33643 * 114.49939 * 0.47282 * 17 16 15 23 23 S 1.70983 * 124.91658 * 285.02351 * 15 2 1 24 24 H 1.09007 * 109.47106 * 300.00284 * 1 2 3 25 25 H 1.08993 * 109.47190 * 59.99909 * 1 2 3 26 26 H 1.08996 * 109.47234 * 180.02562 * 1 2 3 27 27 H 1.00901 * 111.00067 * 38.94911 * 4 2 1 28 28 H 1.09001 * 109.46798 * 300.00327 * 5 4 2 29 29 H 1.08998 * 109.46961 * 60.00043 * 5 4 2 30 30 H 1.09001 * 109.47393 * 299.99719 * 6 5 4 31 31 H 1.08998 * 109.47408 * 60.00073 * 6 5 4 32 32 H 0.97002 * 119.99722 * 180.02562 * 10 9 7 33 33 H 1.09001 * 109.46886 * 59.99934 * 19 18 17 34 34 H 1.09002 * 109.47329 * 179.97438 * 19 18 17 35 35 H 1.08995 * 109.47238 * 300.00236 * 19 18 17 36 36 H 1.09003 * 109.47167 * 59.99904 * 20 18 17 37 37 H 1.09004 * 109.47408 * 179.97438 * 20 18 17 38 38 H 1.09001 * 109.47409 * 300.00133 * 20 18 17 39 39 H 1.08997 * 109.47229 * 60.00716 * 21 18 17 40 40 H 1.09004 * 109.47380 * 180.02562 * 21 18 17 41 41 H 1.08994 * 109.47433 * 300.00296 * 21 18 17 42 42 H 1.07996 * 126.03513 * 179.72085 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0825 0.2226 2.3469 6 6 2.5962 -0.5329 3.5741 7 6 2.6601 0.4056 4.7515 8 1 2.3643 1.4380 4.6358 9 6 3.0962 -0.0533 5.9762 10 7 3.4559 -1.3105 6.1172 11 14 3.1760 1.1102 7.4353 12 1 2.7198 2.4602 7.0175 13 1 2.2967 0.6049 8.5202 14 1 4.5744 1.1904 7.9286 15 6 2.0323 -0.7104 -1.2304 16 7 2.5320 -0.1276 -2.2675 17 6 2.9278 -0.9005 -3.2587 18 6 3.5337 -0.3548 -4.5261 19 6 3.7603 -1.4987 -5.5166 20 6 2.5842 0.6738 -5.1435 21 6 4.8716 0.3143 -4.2049 22 6 2.7432 -2.2075 -3.0500 23 16 2.0158 -2.4050 -1.4574 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.4495 -1.4979 1.4100 28 1 2.7589 1.0462 2.1182 29 1 1.0871 0.6163 2.5525 30 1 1.9202 -1.3567 3.8030 31 1 3.5917 -0.9263 3.3683 32 1 3.7624 -1.6335 6.9790 33 1 2.8072 -1.9753 -5.7454 34 1 4.1982 -1.1040 -6.4335 35 1 4.4367 -2.2316 -5.0767 36 1 2.4227 1.4887 -4.4378 37 1 3.0226 1.0689 -6.0600 38 1 1.6310 0.1972 -5.3723 39 1 5.5480 -0.4186 -3.7651 40 1 5.3096 0.7093 -5.1215 41 1 4.7101 1.1291 -3.4992 42 1 2.9948 -3.0023 -3.7366 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184473057.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:15 Heat of formation + Delta-G solvation = -1.486138 kcal Electronic energy + Delta-G solvation = -19675.741695 eV Core-core repulsion = 16780.762913 eV Total energy + Delta-G solvation = -2894.978782 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.22627 -38.56673 -36.88904 -35.29235 -32.98559 -30.62499 -29.52447 -28.13450 -28.12640 -26.49305 -25.74623 -23.48587 -22.59822 -21.38707 -19.79957 -18.51539 -18.22425 -17.04701 -16.51800 -16.30470 -15.99861 -15.69409 -15.51993 -14.76714 -14.67516 -14.46422 -14.24483 -14.02876 -13.76054 -13.32063 -13.17813 -13.04229 -12.99183 -12.87382 -12.70582 -12.55644 -12.40817 -12.38110 -12.01714 -11.85890 -11.83926 -11.61901 -11.44436 -11.26500 -10.56913 -10.53061 -10.28559 -9.60856 -9.41098 -8.20060 -6.31083 -0.18217 0.51753 0.92001 1.40849 1.41467 1.54538 1.85466 2.40535 2.82385 3.13866 3.47929 3.74514 3.92660 4.03091 4.08859 4.16666 4.32119 4.38437 4.48531 4.54676 4.58887 4.73266 4.77720 4.79712 4.82070 4.89201 4.97963 5.02439 5.03988 5.08506 5.11851 5.17113 5.37667 5.40899 5.44611 5.48765 5.66308 5.76743 6.05206 6.21040 6.42210 6.86099 6.87117 7.38190 8.92281 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.028512 B = 0.003140 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.811418 B = 8915.742479 C = 9043.811666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.157 3.843 3 H 0.093 0.907 4 N -0.690 5.690 5 C 0.089 3.911 6 C 0.033 3.967 7 C -0.542 4.542 8 H 0.061 0.939 9 C 0.001 3.999 10 N -0.931 5.931 11 Si 0.966 3.034 12 H -0.261 1.261 13 H -0.277 1.277 14 H -0.280 1.280 15 C 0.059 3.941 16 N -0.492 5.492 17 C 0.064 3.936 18 C 0.005 3.995 19 C -0.139 4.139 20 C -0.129 4.129 21 C -0.133 4.133 22 C -0.270 4.270 23 S 0.142 5.858 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.068 0.932 27 H 0.344 0.656 28 H 0.056 0.944 29 H 0.033 0.967 30 H -0.004 1.004 31 H -0.008 1.008 32 H 0.263 0.737 33 H 0.064 0.936 34 H 0.080 0.920 35 H 0.061 0.939 36 H 0.044 0.956 37 H 0.078 0.922 38 H 0.052 0.948 39 H 0.047 0.953 40 H 0.080 0.920 41 H 0.041 0.959 42 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.700 -0.671 -24.255 24.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.043 3.957 3 H 0.111 0.889 4 N -0.322 5.322 5 C -0.039 4.039 6 C -0.005 4.005 7 C -0.581 4.581 8 H 0.080 0.920 9 C -0.197 4.197 10 N -0.571 5.571 11 Si 0.790 3.210 12 H -0.185 1.185 13 H -0.203 1.203 14 H -0.206 1.206 15 C -0.219 4.219 16 N -0.207 5.207 17 C -0.068 4.068 18 C 0.002 3.998 19 C -0.197 4.197 20 C -0.187 4.187 21 C -0.191 4.191 22 C -0.409 4.409 23 S 0.398 5.602 24 H 0.090 0.910 25 H 0.092 0.908 26 H 0.087 0.913 27 H 0.163 0.837 28 H 0.075 0.925 29 H 0.051 0.949 30 H 0.014 0.986 31 H 0.010 0.990 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.098 0.902 35 H 0.080 0.920 36 H 0.064 0.936 37 H 0.096 0.904 38 H 0.071 0.929 39 H 0.066 0.934 40 H 0.099 0.901 41 H 0.060 0.940 42 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -3.281 -0.997 -23.663 23.910 hybrid contribution -0.270 0.699 0.694 1.021 sum -3.551 -0.297 -22.969 23.244 Atomic orbital electron populations 1.22414 0.93384 1.03349 1.03537 1.19944 0.94186 0.96836 0.84702 0.88886 1.60442 1.57493 1.10376 1.03914 1.21796 0.98689 0.94507 0.88954 1.18909 0.94933 0.94938 0.91723 1.21630 1.43898 0.97056 0.95484 0.92039 1.25958 0.94802 0.96817 1.02159 1.70117 1.45297 1.16368 1.25352 0.85386 0.77805 0.79158 0.78608 1.18531 1.20274 1.20560 1.27003 1.01576 0.95258 0.98094 1.65980 1.13762 1.39905 1.01069 1.20552 1.00728 0.89097 0.96421 1.19252 0.95012 0.96589 0.88901 1.21934 1.02448 0.96860 0.98414 1.21753 0.98487 0.97857 1.00601 1.21798 0.95266 0.99976 1.02061 1.27205 1.11403 1.01285 1.00973 1.83925 1.56359 1.07952 1.11949 0.91007 0.90762 0.91304 0.83728 0.92536 0.94880 0.98582 0.98962 0.92774 0.91683 0.90157 0.91975 0.93650 0.90359 0.92935 0.93370 0.90067 0.94014 0.78342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.03 9.14 71.98 0.66 -3.37 16 2 C 0.16 4.69 3.10 44.17 0.14 4.82 16 3 H 0.09 2.97 7.80 -2.39 -0.02 2.96 16 4 N -0.69 -24.41 6.04 -495.45 -2.99 -27.41 16 5 C 0.09 3.68 5.42 86.30 0.47 4.15 16 6 C 0.03 1.72 5.23 29.85 0.16 1.88 16 7 C -0.54 -30.86 9.11 25.60 0.23 -30.62 16 8 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 9 C 0.00 0.04 5.46 84.65 0.46 0.50 16 10 N -0.93 -56.90 13.29 21.45 0.28 -56.62 16 11 Si 0.97 44.34 29.54 68.60 2.03 46.37 16 12 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 13 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 14 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 15 C 0.06 1.74 6.32 88.52 0.56 2.30 16 16 N -0.49 -14.68 10.34 -179.40 -1.85 -16.54 16 17 C 0.06 1.60 5.29 41.52 0.22 1.82 16 18 C 0.01 0.10 0.98 -52.93 -0.05 0.05 16 19 C -0.14 -1.81 7.27 71.98 0.52 -1.28 16 20 C -0.13 -2.30 8.37 71.98 0.60 -1.70 16 21 C -0.13 -2.61 8.46 71.98 0.61 -2.00 16 22 C -0.27 -6.00 10.13 66.78 0.68 -5.32 16 23 S 0.14 3.59 22.96 -56.49 -1.30 2.30 16 24 H 0.07 1.74 7.45 -2.38 -0.02 1.72 16 25 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.07 1.53 8.13 -2.39 -0.02 1.51 16 27 H 0.34 11.55 8.47 -89.69 -0.76 10.79 16 28 H 0.06 2.39 8.06 -2.39 -0.02 2.37 16 29 H 0.03 1.29 7.44 -2.39 -0.02 1.27 16 30 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 31 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 32 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 33 H 0.06 0.77 7.93 -2.39 -0.02 0.75 16 34 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.06 0.78 7.53 -2.39 -0.02 0.77 16 36 H 0.04 0.98 8.07 -2.39 -0.02 0.96 16 37 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.20 3.17 6.78 -2.91 -0.02 3.15 16 Total: -1.00 -66.04 354.75 1.64 -64.39 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: 0.22 Total: 16.28 kcal Atomic # 6 Polarization: -34.04 SS G_CDS: 5.25 Total: -28.78 kcal Atomic # 7 Polarization: -95.99 SS G_CDS: -4.56 Total: -100.56 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Atomic # 16 Polarization: 3.59 SS G_CDS: -1.30 Total: 2.30 kcal Total: -66.04 1.64 -64.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184473057.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.908 kcal (2) G-P(sol) polarization free energy of solvation -66.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds