Wall clock time and date at job start Tue Mar 31 2020 05:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30667 * 1 3 3 Si 1.86795 * 119.99987 * 2 1 4 4 H 1.48501 * 109.47157 * 239.99897 * 3 2 1 5 5 H 1.48503 * 109.47300 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47448 * 120.00192 * 3 2 1 7 7 C 1.40054 * 120.00162 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00084 * 179.97438 * 7 2 1 9 9 C 1.46369 * 119.99642 * 359.97438 * 7 2 1 10 10 O 1.21687 * 120.00342 * 359.97438 * 9 7 2 11 11 N 1.34782 * 120.00116 * 180.02562 * 9 7 2 12 12 C 1.46501 * 120.00270 * 180.02562 * 11 9 7 13 13 C 1.53002 * 109.46932 * 179.97438 * 12 11 9 14 14 N 1.46501 * 109.46932 * 180.02562 * 13 12 11 15 15 C 1.34771 * 119.99915 * 180.02562 * 14 13 12 16 16 O 1.21278 * 120.00224 * 359.97438 * 15 14 13 17 17 C 1.50696 * 120.00023 * 180.02562 * 15 14 13 18 18 C 1.53002 * 109.47344 * 179.97438 * 17 15 14 19 19 C 1.52997 * 109.46817 * 64.99877 * 18 17 15 20 20 C 1.52999 * 109.47317 * 179.97438 * 19 18 17 21 21 C 1.53005 * 109.47159 * 300.00546 * 20 19 18 22 22 C 1.52997 * 109.47452 * 59.99536 * 21 20 19 23 23 C 1.53000 * 109.47233 * 184.99683 * 18 17 15 24 24 H 0.97006 * 120.00061 * 359.97438 * 1 2 3 25 25 H 0.97004 * 119.99318 * 359.97438 * 11 9 7 26 26 H 1.08999 * 109.47004 * 59.99859 * 12 11 9 27 27 H 1.08997 * 109.46832 * 299.99518 * 12 11 9 28 28 H 1.08995 * 109.46928 * 59.99933 * 13 12 11 29 29 H 1.08997 * 109.47011 * 300.00003 * 13 12 11 30 30 H 0.97002 * 119.99602 * 359.97438 * 14 13 12 31 31 H 1.09008 * 109.47224 * 59.99699 * 17 15 14 32 32 H 1.08997 * 109.47214 * 299.99692 * 17 15 14 33 33 H 1.09002 * 109.47070 * 305.00057 * 18 17 15 34 34 H 1.08996 * 109.47853 * 300.00202 * 19 18 17 35 35 H 1.09002 * 109.47153 * 60.00231 * 19 18 17 36 36 H 1.09000 * 109.47486 * 180.02562 * 20 19 18 37 37 H 1.09002 * 109.46716 * 60.00091 * 20 19 18 38 38 H 1.09002 * 109.46935 * 299.99411 * 21 20 19 39 39 H 1.09001 * 109.46812 * 179.97438 * 21 20 19 40 40 H 1.08993 * 109.47194 * 179.97438 * 22 21 20 41 41 H 1.09002 * 109.46695 * 59.99734 * 22 21 20 42 42 H 1.08992 * 109.47399 * 300.00166 * 23 18 17 43 43 H 1.09004 * 109.46724 * 60.00652 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6177 0.0000 4 1 3.0944 1.6964 -1.2125 5 1 1.2757 2.7465 0.0006 6 1 3.0945 1.6964 1.2124 7 6 2.0070 -1.2129 -0.0005 8 1 3.0869 -1.2129 -0.0010 9 6 1.2751 -2.4805 -0.0005 10 8 0.0582 -2.4805 0.0004 11 7 1.9489 -3.6477 -0.0005 12 6 1.2164 -4.9165 -0.0011 13 6 2.2107 -6.0794 -0.0016 14 7 1.4782 -7.3481 -0.0028 15 6 2.1521 -8.5153 -0.0029 16 8 3.3648 -8.5153 -0.0025 17 6 1.3986 -9.8203 -0.0047 18 6 2.3928 -10.9833 -0.0051 19 6 3.1866 -10.9760 1.3028 20 6 4.1804 -12.1393 1.3028 21 6 3.4192 -13.4604 1.1755 22 6 2.6254 -13.4677 -0.1324 23 6 1.6321 -12.3046 -0.1326 24 1 -0.4850 0.8401 0.0004 25 1 2.9190 -3.6477 -0.0009 26 1 0.5901 -4.9740 -0.8913 27 1 0.5895 -4.9744 0.8887 28 1 2.8373 -6.0220 0.8883 29 1 2.8373 -6.0212 -0.8916 30 1 0.5082 -7.3480 -0.0028 31 1 0.7728 -9.8774 -0.8955 32 1 0.7710 -9.8788 0.8845 33 1 3.0776 -10.8756 -0.8463 34 1 3.7286 -10.0347 1.3938 35 1 2.5018 -11.0837 2.1440 36 1 4.7456 -12.1343 2.2348 37 1 4.8652 -12.0320 0.4616 38 1 2.7344 -13.5676 2.0167 39 1 4.1273 -14.2891 1.1750 40 1 2.0835 -14.4090 -0.2233 41 1 3.3102 -13.3604 -0.9736 42 1 0.9474 -12.4123 0.7086 43 1 1.0666 -12.3098 -1.0645 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184698713.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:52 Heat of formation + Delta-G solvation = -115.735305 kcal Electronic energy + Delta-G solvation = -21487.055999 eV Core-core repulsion = 18144.370130 eV Total energy + Delta-G solvation = -3342.685869 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.12002 -38.36069 -37.38049 -35.20006 -33.13735 -32.81426 -32.21951 -30.91024 -29.02787 -27.13155 -25.78518 -22.86481 -22.54670 -21.67007 -20.44305 -19.91140 -19.56736 -17.45592 -16.84628 -15.91192 -15.80626 -15.50914 -15.23306 -14.77569 -14.42123 -14.26806 -14.18223 -14.04886 -13.75728 -13.39000 -12.72056 -12.46357 -12.38500 -12.28548 -12.13549 -11.80817 -11.32630 -11.30374 -11.21978 -11.15577 -11.15068 -10.84165 -10.65223 -10.49459 -10.47479 -10.27991 -10.24038 -9.66054 -9.01842 -8.86949 -7.68755 -7.60329 -6.22007 -4.67540 2.64288 3.12324 3.15104 3.20092 3.22754 4.09758 4.40962 4.48005 4.49881 4.55256 4.75670 4.88554 4.95837 5.00187 5.11356 5.22654 5.26516 5.29886 5.35739 5.39080 5.42253 5.46688 5.51833 5.68690 5.78207 5.78664 5.82135 5.91281 5.97155 5.99450 6.07894 6.24091 6.31883 6.35930 6.40288 6.52017 7.40864 7.49816 7.86525 8.01084 8.23394 8.28372 8.99308 9.46395 10.55757 10.73654 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.055135 B = 0.002265 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.717975 B =12357.141695 C =12692.523295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.087 3.913 3 Si 0.910 3.090 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.545 4.545 8 H 0.068 0.932 9 C 0.555 3.445 10 O -0.581 6.581 11 N -0.765 5.765 12 C 0.124 3.876 13 C 0.110 3.890 14 N -0.727 5.727 15 C 0.511 3.489 16 O -0.539 6.539 17 C -0.139 4.139 18 C -0.070 4.070 19 C -0.121 4.121 20 C -0.118 4.118 21 C -0.120 4.120 22 C -0.119 4.119 23 C -0.115 4.115 24 H 0.269 0.731 25 H 0.383 0.617 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.402 0.598 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.054 0.946 36 H 0.058 0.942 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.057 0.943 40 H 0.059 0.941 41 H 0.061 0.939 42 H 0.062 0.938 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.860 -23.919 0.809 24.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.133 4.133 3 Si 0.734 3.266 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.192 1.192 7 C -0.582 4.582 8 H 0.087 0.913 9 C 0.359 3.641 10 O -0.464 6.464 11 N -0.422 5.422 12 C -0.002 4.002 13 C -0.014 4.014 14 N -0.379 5.379 15 C 0.297 3.703 16 O -0.417 6.417 17 C -0.179 4.179 18 C -0.089 4.089 19 C -0.158 4.158 20 C -0.155 4.155 21 C -0.158 4.158 22 C -0.156 4.156 23 C -0.153 4.153 24 H 0.080 0.920 25 H 0.214 0.786 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.236 0.764 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.640 -23.795 0.810 24.086 hybrid contribution 0.358 0.835 -0.004 0.908 sum 3.999 -22.961 0.806 23.320 Atomic orbital electron populations 1.70008 1.07083 1.27452 1.35138 1.25719 0.94652 1.00358 0.92583 0.86402 0.79788 0.80877 0.79496 1.19241 1.20556 1.19247 1.20841 0.93633 0.89267 1.54412 0.91335 1.18228 0.87199 0.82293 0.76355 1.90598 1.14080 1.86742 1.54974 1.46037 1.08722 1.04403 1.83061 1.20948 0.94000 0.84057 1.01229 1.21538 0.95140 0.82237 1.02521 1.45965 1.10609 1.05845 1.75465 1.20690 0.88332 0.85408 0.75821 1.90668 1.14029 1.87609 1.49350 1.21772 0.99397 0.92296 1.04391 1.20905 0.96149 0.92220 0.99626 1.21715 0.98083 0.99749 0.96262 1.21503 0.97973 0.94392 1.01648 1.21560 0.98946 0.97577 0.97711 1.21501 0.98141 0.97957 0.98009 1.21596 0.97780 0.94162 1.01742 0.92002 0.78578 0.92862 0.92848 0.91224 0.91228 0.76388 0.88884 0.88911 0.90392 0.89869 0.92754 0.92295 0.92019 0.92186 0.92390 0.92206 0.92012 0.91943 0.92004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.95 11.83 55.55 0.66 -22.29 16 2 C 0.09 2.41 5.50 -17.37 -0.10 2.32 16 3 Si 0.91 20.07 29.56 -169.99 -5.02 15.04 16 4 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 5 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 6 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 7 C -0.54 -15.32 9.54 -35.63 -0.34 -15.66 16 8 H 0.07 1.76 7.85 -52.49 -0.41 1.35 16 9 C 0.55 15.70 7.75 -12.99 -0.10 15.60 16 10 O -0.58 -18.68 15.02 5.20 0.08 -18.60 16 11 N -0.77 -16.85 5.55 -61.72 -0.34 -17.19 16 12 C 0.12 2.24 5.79 -4.04 -0.02 2.22 16 13 C 0.11 1.60 5.79 -4.04 -0.02 1.57 16 14 N -0.73 -8.70 5.56 -60.30 -0.33 -9.03 16 15 C 0.51 6.26 7.55 -10.99 -0.08 6.17 16 16 O -0.54 -8.49 13.97 5.56 0.08 -8.42 16 17 C -0.14 -1.17 5.17 -27.88 -0.14 -1.32 16 18 C -0.07 -0.63 1.84 -90.62 -0.17 -0.79 16 19 C -0.12 -1.18 4.94 -26.73 -0.13 -1.31 16 20 C -0.12 -1.02 5.92 -26.73 -0.16 -1.18 16 21 C -0.12 -0.88 5.92 -26.73 -0.16 -1.03 16 22 C -0.12 -0.82 5.92 -26.76 -0.16 -0.98 16 23 C -0.12 -0.82 5.20 -26.76 -0.14 -0.95 16 24 H 0.27 7.30 8.29 -40.82 -0.34 6.96 16 25 H 0.38 7.41 8.45 -40.82 -0.35 7.07 16 26 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 27 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 29 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.40 3.88 8.47 -40.82 -0.35 3.53 16 31 H 0.09 0.63 8.14 -51.92 -0.42 0.21 16 32 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.08 0.82 7.95 -51.93 -0.41 0.41 16 34 H 0.08 1.03 5.95 -51.93 -0.31 0.72 16 35 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 348.74 15.07 5.26 5.26 Total: -1.00 -35.17 348.74 -8.66 -43.83 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -7.30 Total: 6.75 kcal Atomic # 6 Polarization: 6.37 SS G_CDS: -1.72 Total: 4.65 kcal Atomic # 7 Polarization: -48.50 SS G_CDS: -0.02 Total: -48.52 kcal Atomic # 8 Polarization: -27.17 SS G_CDS: 0.16 Total: -27.01 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -35.17 -8.66 -43.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184698713.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.904 kcal (2) G-P(sol) polarization free energy of solvation -35.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds