Wall clock time and date at job start Tue Mar 31 2020 05:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30667 * 1 3 3 Si 1.86795 * 119.99987 * 2 1 4 4 H 1.48501 * 109.47157 * 239.99897 * 3 2 1 5 5 H 1.48503 * 109.47300 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47448 * 120.00192 * 3 2 1 7 7 C 1.40054 * 120.00162 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00084 * 179.97438 * 7 2 1 9 9 C 1.46369 * 119.99642 * 359.97438 * 7 2 1 10 10 O 1.21687 * 120.00342 * 359.97438 * 9 7 2 11 11 N 1.34782 * 120.00116 * 180.02562 * 9 7 2 12 12 C 1.46501 * 120.00270 * 180.02562 * 11 9 7 13 13 C 1.53002 * 109.46932 * 179.97438 * 12 11 9 14 14 N 1.46501 * 109.46932 * 180.02562 * 13 12 11 15 15 C 1.34771 * 119.99915 * 180.02562 * 14 13 12 16 16 O 1.21278 * 120.00224 * 359.97438 * 15 14 13 17 17 C 1.50696 * 120.00023 * 180.02562 * 15 14 13 18 18 C 1.53002 * 109.47344 * 179.97438 * 17 15 14 19 19 C 1.52997 * 109.46817 * 64.99877 * 18 17 15 20 20 C 1.52999 * 109.47317 * 179.97438 * 19 18 17 21 21 C 1.53005 * 109.47159 * 300.00546 * 20 19 18 22 22 C 1.52997 * 109.47452 * 59.99536 * 21 20 19 23 23 C 1.53000 * 109.47233 * 184.99683 * 18 17 15 24 24 H 0.97006 * 120.00061 * 359.97438 * 1 2 3 25 25 H 0.97004 * 119.99318 * 359.97438 * 11 9 7 26 26 H 1.08999 * 109.47004 * 59.99859 * 12 11 9 27 27 H 1.08997 * 109.46832 * 299.99518 * 12 11 9 28 28 H 1.08995 * 109.46928 * 59.99933 * 13 12 11 29 29 H 1.08997 * 109.47011 * 300.00003 * 13 12 11 30 30 H 0.97002 * 119.99602 * 359.97438 * 14 13 12 31 31 H 1.09008 * 109.47224 * 59.99699 * 17 15 14 32 32 H 1.08997 * 109.47214 * 299.99692 * 17 15 14 33 33 H 1.09002 * 109.47070 * 305.00057 * 18 17 15 34 34 H 1.08996 * 109.47853 * 300.00202 * 19 18 17 35 35 H 1.09002 * 109.47153 * 60.00231 * 19 18 17 36 36 H 1.09000 * 109.47486 * 180.02562 * 20 19 18 37 37 H 1.09002 * 109.46716 * 60.00091 * 20 19 18 38 38 H 1.09002 * 109.46935 * 299.99411 * 21 20 19 39 39 H 1.09001 * 109.46812 * 179.97438 * 21 20 19 40 40 H 1.08993 * 109.47194 * 179.97438 * 22 21 20 41 41 H 1.09002 * 109.46695 * 59.99734 * 22 21 20 42 42 H 1.08992 * 109.47399 * 300.00166 * 23 18 17 43 43 H 1.09004 * 109.46724 * 60.00652 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6177 0.0000 4 1 3.0944 1.6964 -1.2125 5 1 1.2757 2.7465 0.0006 6 1 3.0945 1.6964 1.2124 7 6 2.0070 -1.2129 -0.0005 8 1 3.0869 -1.2129 -0.0010 9 6 1.2751 -2.4805 -0.0005 10 8 0.0582 -2.4805 0.0004 11 7 1.9489 -3.6477 -0.0005 12 6 1.2164 -4.9165 -0.0011 13 6 2.2107 -6.0794 -0.0016 14 7 1.4782 -7.3481 -0.0028 15 6 2.1521 -8.5153 -0.0029 16 8 3.3648 -8.5153 -0.0025 17 6 1.3986 -9.8203 -0.0047 18 6 2.3928 -10.9833 -0.0051 19 6 3.1866 -10.9760 1.3028 20 6 4.1804 -12.1393 1.3028 21 6 3.4192 -13.4604 1.1755 22 6 2.6254 -13.4677 -0.1324 23 6 1.6321 -12.3046 -0.1326 24 1 -0.4850 0.8401 0.0004 25 1 2.9190 -3.6477 -0.0009 26 1 0.5901 -4.9740 -0.8913 27 1 0.5895 -4.9744 0.8887 28 1 2.8373 -6.0220 0.8883 29 1 2.8373 -6.0212 -0.8916 30 1 0.5082 -7.3480 -0.0028 31 1 0.7728 -9.8774 -0.8955 32 1 0.7710 -9.8788 0.8845 33 1 3.0776 -10.8756 -0.8463 34 1 3.7286 -10.0347 1.3938 35 1 2.5018 -11.0837 2.1440 36 1 4.7456 -12.1343 2.2348 37 1 4.8652 -12.0320 0.4616 38 1 2.7344 -13.5676 2.0167 39 1 4.1273 -14.2891 1.1750 40 1 2.0835 -14.4090 -0.2233 41 1 3.3102 -13.3604 -0.9736 42 1 0.9474 -12.4123 0.7086 43 1 1.0666 -12.3098 -1.0645 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184698713.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:51 Heat of formation + Delta-G solvation = -141.258388 kcal Electronic energy + Delta-G solvation = -21488.162763 eV Core-core repulsion = 18144.370130 eV Total energy + Delta-G solvation = -3343.792633 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.07057 -39.52406 -38.99309 -36.61840 -34.84783 -34.28027 -33.57559 -31.54478 -30.47306 -28.48787 -27.33564 -23.95227 -23.44073 -22.57247 -21.89542 -21.04198 -20.56942 -19.32682 -17.92997 -17.54651 -16.92510 -16.80848 -16.28301 -15.96177 -15.89870 -15.77197 -15.04957 -14.95304 -14.87946 -14.40237 -14.33311 -14.16898 -13.31025 -13.12447 -13.02300 -12.92656 -12.82098 -12.73148 -12.60154 -12.57780 -12.40928 -12.05380 -11.94675 -11.81407 -11.30426 -11.26587 -10.92683 -10.89216 -10.58402 -10.11394 -9.92395 -9.55624 -8.31051 -6.87420 1.40911 1.44003 1.55797 1.67422 2.05354 2.27953 2.45129 3.25507 3.58958 3.70577 3.75581 3.85171 3.87284 4.08095 4.09529 4.27776 4.36012 4.42344 4.51933 4.60558 4.64051 4.70375 4.78389 4.85846 4.90092 4.90755 4.92312 5.07795 5.22326 5.28616 5.31072 5.31831 5.35405 5.39110 5.45555 5.59297 5.65238 5.84812 6.16197 6.22740 6.55215 6.85289 7.26790 7.48395 8.45169 8.64653 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.055135 B = 0.002265 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.717975 B =12357.141695 C =12692.523295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.028 3.972 3 Si 0.999 3.001 4 H -0.255 1.255 5 H -0.274 1.274 6 H -0.255 1.255 7 C -0.574 4.574 8 H 0.088 0.912 9 C 0.538 3.462 10 O -0.630 6.630 11 N -0.756 5.756 12 C 0.130 3.870 13 C 0.128 3.872 14 N -0.721 5.721 15 C 0.508 3.492 16 O -0.578 6.578 17 C -0.131 4.131 18 C -0.069 4.069 19 C -0.120 4.120 20 C -0.119 4.119 21 C -0.117 4.117 22 C -0.120 4.120 23 C -0.110 4.110 24 H 0.275 0.725 25 H 0.397 0.603 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.415 0.585 31 H 0.118 0.882 32 H 0.115 0.885 33 H 0.056 0.944 34 H 0.051 0.949 35 H 0.063 0.937 36 H 0.058 0.942 37 H 0.049 0.951 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.074 0.926 41 H 0.054 0.946 42 H 0.073 0.927 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.202 -24.679 0.846 25.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.187 4.187 3 Si 0.818 3.182 4 H -0.179 1.179 5 H -0.199 1.199 6 H -0.179 1.179 7 C -0.610 4.610 8 H 0.106 0.894 9 C 0.343 3.657 10 O -0.517 6.517 11 N -0.411 5.411 12 C 0.005 3.995 13 C 0.003 3.997 14 N -0.374 5.374 15 C 0.296 3.704 16 O -0.457 6.457 17 C -0.170 4.170 18 C -0.088 4.088 19 C -0.157 4.157 20 C -0.156 4.156 21 C -0.155 4.155 22 C -0.157 4.157 23 C -0.148 4.148 24 H 0.085 0.915 25 H 0.230 0.770 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.252 0.748 31 H 0.136 0.864 32 H 0.134 0.866 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.092 0.908 41 H 0.073 0.927 42 H 0.092 0.908 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.003 -24.614 0.847 24.951 hybrid contribution 0.274 0.991 -0.008 1.028 sum 4.277 -23.623 0.839 24.022 Atomic orbital electron populations 1.70168 1.09478 1.29110 1.36216 1.26982 0.95575 1.04981 0.91198 0.85054 0.78189 0.74677 0.80276 1.17867 1.19854 1.17881 1.21407 0.94825 0.90034 1.54761 0.89372 1.18581 0.86847 0.84175 0.76110 1.90551 1.16060 1.87876 1.57250 1.45692 1.09485 1.04470 1.81467 1.20968 0.94402 0.83596 1.00533 1.21158 0.94049 0.82159 1.02286 1.45888 1.11270 1.04908 1.75328 1.21414 0.88066 0.86342 0.74530 1.90664 1.15934 1.88136 1.51007 1.21828 0.99178 0.89432 1.06603 1.20878 0.96059 0.93676 0.98161 1.21666 0.98291 0.98543 0.97224 1.21502 0.97836 0.95131 1.01146 1.21543 0.99088 0.96621 0.98238 1.21526 0.98123 0.98651 0.97447 1.21569 0.97679 0.92692 1.02818 0.91464 0.76953 0.93522 0.93522 0.91486 0.91479 0.74834 0.86434 0.86647 0.92551 0.92995 0.91879 0.92326 0.93219 0.91544 0.91722 0.90769 0.92712 0.90847 0.90839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -49.93 11.83 21.84 0.26 -49.67 16 2 C 0.03 1.55 5.50 85.31 0.47 2.02 16 3 Si 1.00 40.71 29.56 68.60 2.03 42.74 16 4 H -0.25 -9.78 7.11 99.48 0.71 -9.07 16 5 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 6 H -0.25 -9.79 7.11 99.48 0.71 -9.08 16 7 C -0.57 -32.39 9.54 24.83 0.24 -32.16 16 8 H 0.09 4.45 7.85 -2.92 -0.02 4.43 16 9 C 0.54 31.05 7.75 86.36 0.67 31.72 16 10 O -0.63 -41.77 15.02 -4.31 -0.06 -41.83 16 11 N -0.76 -33.47 5.55 -467.40 -2.59 -36.07 16 12 C 0.13 4.74 5.79 86.38 0.50 5.24 16 13 C 0.13 3.68 5.79 86.38 0.50 4.18 16 14 N -0.72 -16.48 5.56 -463.08 -2.57 -19.05 16 15 C 0.51 11.97 7.55 87.66 0.66 12.63 16 16 O -0.58 -18.33 13.97 -3.02 -0.04 -18.37 16 17 C -0.13 -1.93 5.17 29.85 0.15 -1.78 16 18 C -0.07 -1.14 1.84 -10.79 -0.02 -1.16 16 19 C -0.12 -2.29 4.94 30.59 0.15 -2.13 16 20 C -0.12 -2.03 5.92 30.60 0.18 -1.84 16 21 C -0.12 -1.52 5.92 30.60 0.18 -1.34 16 22 C -0.12 -1.43 5.92 30.58 0.18 -1.25 16 23 C -0.11 -1.28 5.20 30.58 0.16 -1.12 16 24 H 0.28 15.17 8.29 -92.70 -0.77 14.41 16 25 H 0.40 15.26 8.45 -92.71 -0.78 14.47 16 26 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.42 7.36 8.47 -92.71 -0.79 6.57 16 31 H 0.12 1.22 8.14 -2.38 -0.02 1.20 16 32 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.06 1.18 7.95 -2.39 -0.02 1.16 16 34 H 0.05 1.33 5.95 -2.39 -0.01 1.31 16 35 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.05 0.94 8.14 -2.39 -0.02 0.93 16 38 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 Total: -1.00 -78.48 348.74 0.47 -78.01 By element: Atomic # 1 Polarization: 31.81 SS G_CDS: -0.56 Total: 31.24 kcal Atomic # 6 Polarization: 8.98 SS G_CDS: 4.03 Total: 13.00 kcal Atomic # 7 Polarization: -99.88 SS G_CDS: -4.91 Total: -104.79 kcal Atomic # 8 Polarization: -60.10 SS G_CDS: -0.11 Total: -60.20 kcal Atomic # 14 Polarization: 40.71 SS G_CDS: 2.03 Total: 42.74 kcal Total: -78.48 0.47 -78.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184698713.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.250 kcal (2) G-P(sol) polarization free energy of solvation -78.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds