Wall clock time and date at job start Tue Mar 31 2020 06:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 119.99920 * 2 1 4 4 H 1.48503 * 109.46692 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47110 * 299.99672 * 3 2 1 6 6 H 1.48503 * 109.47228 * 59.99837 * 3 2 1 7 7 C 1.37881 * 119.99686 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99648 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00002 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.46817 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47300 * 179.97438 * 10 9 7 12 12 N 1.46496 * 109.47630 * 179.97438 * 11 10 9 13 13 C 1.34774 * 120.00721 * 179.97438 * 12 11 10 14 14 O 1.21595 * 119.99245 * 0.02562 * 13 12 11 15 15 N 1.34770 * 120.00585 * 180.02562 * 13 12 11 16 16 C 1.46506 * 120.00236 * 180.02562 * 15 13 12 17 17 H 1.09004 * 112.89440 * 333.78604 * 16 15 13 18 18 C 1.53853 * 113.67519 * 202.39439 * 16 15 13 19 19 C 1.54066 * 86.91163 * 270.86938 * 18 16 15 20 20 H 1.09000 * 113.04438 * 220.64815 * 19 18 16 21 21 O 1.41866 * 112.50794 * 91.97199 * 19 18 16 22 22 C 1.42426 * 116.24506 * 222.45219 * 21 19 18 23 23 C 1.53184 * 108.90937 * 58.19645 * 22 21 19 24 24 C 1.52789 * 108.70755 * 294.53187 * 23 22 21 25 25 C 1.51467 * 110.66419 * 54.29144 * 24 23 22 26 26 H 1.09005 * 111.23827 * 192.53969 * 25 24 23 27 27 H 0.97006 * 120.00112 * 0.02562 * 1 2 3 28 28 H 1.08993 * 109.47398 * 60.00257 * 9 7 2 29 29 H 1.08999 * 109.47203 * 299.99650 * 9 7 2 30 30 H 1.09002 * 109.47114 * 60.00018 * 10 9 7 31 31 H 1.09001 * 109.47328 * 300.00161 * 10 9 7 32 32 H 1.09002 * 109.47017 * 59.99965 * 11 10 9 33 33 H 1.09001 * 109.47067 * 300.00328 * 11 10 9 34 34 H 0.97004 * 119.99771 * 0.02562 * 12 11 10 35 35 H 0.97004 * 119.99906 * 0.02562 * 15 13 12 36 36 H 1.08995 * 113.64610 * 25.37637 * 18 16 15 37 37 H 1.09004 * 113.63542 * 156.36605 * 18 16 15 38 38 H 1.08995 * 109.56691 * 178.02889 * 22 21 19 39 39 H 1.09006 * 109.56262 * 298.37702 * 22 21 19 40 40 H 1.08996 * 109.59626 * 54.29672 * 23 22 21 41 41 H 1.08994 * 109.59583 * 174.60587 * 23 22 21 42 42 H 1.09000 * 109.20064 * 174.51014 * 24 23 22 43 43 H 1.08995 * 109.20233 * 293.80806 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0017 10 6 2.2452 -3.6621 0.0027 11 6 1.4802 -4.9871 0.0046 12 7 2.4321 -6.1006 0.0049 13 6 1.9830 -7.3713 0.0070 14 8 0.7875 -7.5934 0.0081 15 7 2.8587 -8.3957 0.0079 16 6 2.3704 -9.7770 0.0096 17 1 1.3798 -9.8760 0.4536 18 6 3.3929 -10.7931 0.5472 19 6 3.9051 -10.9179 -0.9004 20 1 4.1425 -11.9438 -1.1821 21 8 4.9676 -10.0204 -1.1798 22 6 4.9163 -9.3560 -2.4386 23 6 3.6055 -8.5688 -2.5313 24 6 2.4402 -9.5569 -2.5419 25 6 2.5143 -10.4836 -1.3461 26 1 1.8282 -11.3237 -1.4545 27 1 -0.4850 0.8401 -0.0004 28 1 0.6240 -2.5576 -0.8879 29 1 0.6247 -2.5563 0.8920 30 1 2.8718 -3.6035 0.8927 31 1 2.8719 -3.6052 -0.8873 32 1 0.8532 -5.0459 -0.8851 33 1 0.8538 -5.0438 0.8948 34 1 3.3858 -5.9234 0.0045 35 1 3.8124 -8.2185 0.0074 36 1 4.1210 -10.3596 1.2327 37 1 2.9401 -11.7074 0.9310 38 1 5.7601 -8.6715 -2.5247 39 1 4.9576 -10.0919 -3.2417 40 1 3.5153 -7.9063 -1.6705 41 1 3.5969 -7.9798 -3.4484 42 1 1.5013 -9.0042 -2.5092 43 1 2.4773 -10.1452 -3.4587 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187493867.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:48 Heat of formation + Delta-G solvation = -57.424074 kcal Electronic energy + Delta-G solvation = -22713.748369 eV Core-core repulsion = 19373.591064 eV Total energy + Delta-G solvation = -3340.157304 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.57032 -39.26859 -36.33170 -35.25326 -33.80059 -33.35923 -32.86444 -30.93474 -27.71348 -26.72529 -25.16391 -24.01246 -22.99901 -21.61165 -20.74962 -20.34160 -19.51537 -18.13937 -16.62844 -16.46017 -16.18737 -15.94642 -15.62354 -15.37262 -14.72244 -14.53647 -14.32286 -14.05881 -13.91061 -13.67958 -13.10508 -12.60298 -12.30575 -12.28042 -11.80104 -11.78032 -11.52152 -11.41724 -11.20410 -10.92485 -10.86000 -10.71603 -10.55954 -10.38393 -10.07510 -9.85337 -9.59907 -9.43400 -9.10420 -8.91726 -8.51603 -8.36915 -6.01390 -4.04336 2.77128 3.30233 3.32436 3.35385 3.37775 3.41336 4.06808 4.24683 4.41781 4.46938 4.47615 4.63735 4.72770 4.77148 5.03489 5.18357 5.31200 5.34250 5.34494 5.45374 5.53615 5.57326 5.61858 5.71928 5.79316 5.82551 5.85283 6.00388 6.13192 6.19764 6.52561 6.54189 6.63492 6.82404 7.03253 7.05105 7.11194 7.64862 7.77506 7.97757 8.16633 8.38736 8.76517 9.02660 9.59845 11.09933 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.032636 B = 0.002969 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.739024 B = 9429.610713 C = 9755.324097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.056 0.944 9 C 0.024 3.976 10 C -0.120 4.120 11 C 0.136 3.864 12 N -0.742 5.742 13 C 0.701 3.299 14 O -0.591 6.591 15 N -0.725 5.725 16 C 0.149 3.851 17 H 0.104 0.896 18 C -0.149 4.149 19 C 0.075 3.925 20 H 0.072 0.928 21 O -0.370 6.370 22 C 0.066 3.934 23 C -0.177 4.177 24 C -0.103 4.103 25 C -0.150 4.150 26 H 0.103 0.897 27 H 0.260 0.740 28 H 0.019 0.981 29 H 0.019 0.981 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.393 0.607 35 H 0.401 0.599 36 H 0.085 0.915 37 H 0.106 0.894 38 H 0.095 0.905 39 H 0.048 0.952 40 H 0.093 0.907 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.704 -23.795 -3.068 25.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.158 4.158 11 C 0.013 3.987 12 N -0.396 5.396 13 C 0.401 3.599 14 O -0.469 6.469 15 N -0.383 5.383 16 C 0.042 3.958 17 H 0.122 0.878 18 C -0.187 4.187 19 C 0.017 3.983 20 H 0.090 0.910 21 O -0.289 6.289 22 C -0.010 4.010 23 C -0.215 4.215 24 C -0.140 4.140 25 C -0.171 4.171 26 H 0.121 0.879 27 H 0.070 0.930 28 H 0.037 0.963 29 H 0.037 0.963 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.226 0.774 35 H 0.238 0.762 36 H 0.103 0.897 37 H 0.124 0.876 38 H 0.113 0.887 39 H 0.066 0.934 40 H 0.111 0.889 41 H 0.089 0.911 42 H 0.091 0.909 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.560 -23.809 -2.924 25.470 hybrid contribution 1.067 1.050 -0.319 1.531 sum 9.627 -22.759 -3.243 24.923 Atomic orbital electron populations 1.69980 1.06054 1.26558 1.50679 1.25035 0.94856 0.99309 0.95309 0.86529 0.80052 0.83775 0.77590 1.19757 1.21014 1.21010 1.21246 0.93026 0.90940 1.50758 0.92601 1.19028 0.93857 0.90825 0.97679 1.21890 0.99781 0.93335 1.00830 1.21504 0.91267 0.84122 1.01854 1.45419 1.10440 1.04446 1.79332 1.15970 0.85312 0.80743 0.77841 1.90916 1.14093 1.84064 1.57861 1.45072 1.09129 1.04360 1.79692 1.21615 0.98634 0.80175 0.95345 0.87834 1.23642 0.98722 1.00035 0.96346 1.22655 0.86760 0.92678 0.96224 0.91021 1.87397 1.45046 1.59279 1.37220 1.22522 0.98097 0.95095 0.85285 1.22623 0.95076 0.99379 1.04408 1.20851 0.99558 0.97014 0.96612 1.22965 0.97599 0.99904 0.96599 0.87904 0.92992 0.96254 0.96254 0.92764 0.92781 0.91994 0.91963 0.77362 0.76200 0.89673 0.87578 0.88660 0.93411 0.88889 0.91120 0.90925 0.92322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.87 13.29 55.43 0.74 -26.13 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 4 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.52 -14.57 9.11 -34.44 -0.31 -14.89 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.12 -2.35 5.27 -26.73 -0.14 -2.49 16 11 C 0.14 2.42 5.67 -4.05 -0.02 2.40 16 12 N -0.74 -10.77 5.56 -65.23 -0.36 -11.13 16 13 C 0.70 10.62 7.64 -86.93 -0.66 9.95 16 14 O -0.59 -11.44 15.98 5.28 0.08 -11.35 16 15 N -0.73 -8.16 2.77 -57.96 -0.16 -8.32 16 16 C 0.15 1.50 4.15 -67.20 -0.28 1.22 16 17 H 0.10 1.20 7.52 -51.93 -0.39 0.81 16 18 C -0.15 -1.11 7.63 -25.74 -0.20 -1.31 16 19 C 0.07 0.60 4.72 -26.50 -0.12 0.48 16 20 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 21 O -0.37 -3.43 9.33 -35.22 -0.33 -3.75 16 22 C 0.07 0.54 6.86 37.25 0.26 0.80 16 23 C -0.18 -1.67 5.66 -26.74 -0.15 -1.82 16 24 C -0.10 -1.01 5.55 -27.61 -0.15 -1.17 16 25 C -0.15 -1.31 3.91 -91.44 -0.36 -1.67 16 26 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 28 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.39 4.63 8.49 -40.82 -0.35 4.28 16 35 H 0.40 3.92 6.73 -40.82 -0.27 3.65 16 36 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.09 0.98 3.77 -51.93 -0.20 0.78 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 43 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 339.05 15.07 5.11 5.11 Total: -1.00 -32.63 339.05 -9.42 -42.05 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -7.09 Total: 3.58 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: -2.38 Total: -6.52 kcal Atomic # 7 Polarization: -45.80 SS G_CDS: 0.21 Total: -45.58 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: -0.24 Total: -15.11 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.63 -9.42 -42.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187493867.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.375 kcal (2) G-P(sol) polarization free energy of solvation -32.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds