Wall clock time and date at job start Tue Mar 31 2020 06:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53004 * 109.46942 * 304.27150 * 3 2 1 5 5 N 1.46905 * 109.47111 * 182.16599 * 4 3 2 6 6 C 1.46902 * 110.99737 * 200.13241 * 5 4 3 7 7 C 1.50699 * 109.47544 * 66.04565 * 6 5 4 8 8 H 1.07999 * 119.99846 * 359.97438 * 7 6 5 9 9 C 1.37871 * 119.99926 * 180.02562 * 7 6 5 10 10 N 1.31515 * 120.00182 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99984 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.46944 * 89.99778 * 11 9 7 13 13 H 1.48498 * 109.47053 * 209.99385 * 11 9 7 14 14 H 1.48500 * 109.47244 * 330.00035 * 11 9 7 15 15 C 1.46897 * 110.99830 * 76.17487 * 5 4 3 16 16 C 1.53003 * 109.46635 * 196.33377 * 15 5 4 17 17 O 1.42898 * 109.47490 * 63.89611 * 16 15 5 18 18 C 1.42899 * 113.99794 * 184.75112 * 17 16 15 19 19 H 1.09000 * 109.47821 * 309.17426 * 18 17 16 20 20 C 1.53098 * 109.47698 * 189.16089 * 18 17 16 21 21 C 1.53177 * 109.16265 * 182.40432 * 20 18 17 22 22 C 1.53181 * 109.03517 * 56.97847 * 21 20 18 23 23 C 1.53092 * 109.16320 * 303.02150 * 22 21 20 24 24 O 1.42894 * 109.48682 * 69.20386 * 18 17 16 25 25 H 1.08998 * 109.47076 * 184.27484 * 3 2 1 26 26 H 1.08997 * 109.47153 * 64.26870 * 3 2 1 27 27 H 1.09001 * 109.47001 * 62.16347 * 4 3 2 28 28 H 1.08995 * 109.46992 * 302.16848 * 4 3 2 29 29 H 1.08998 * 109.46437 * 186.04807 * 6 5 4 30 30 H 1.09001 * 109.46802 * 306.03835 * 6 5 4 31 31 H 0.96998 * 120.00422 * 180.02562 * 10 9 7 32 32 H 1.08995 * 109.47401 * 316.32839 * 15 5 4 33 33 H 1.09002 * 109.46987 * 76.33607 * 15 5 4 34 34 H 1.09007 * 109.46714 * 183.89679 * 16 15 5 35 35 H 1.09003 * 109.47048 * 303.89305 * 16 15 5 36 36 H 1.09009 * 109.52038 * 302.30981 * 20 18 17 37 37 H 1.09002 * 109.52616 * 62.49778 * 20 18 17 38 38 H 1.09001 * 109.54131 * 176.84255 * 21 20 18 39 39 H 1.08994 * 109.54712 * 297.11423 * 21 20 18 40 40 H 1.09002 * 109.52172 * 62.92543 * 22 21 20 41 41 H 1.09000 * 109.52157 * 183.05142 * 22 21 20 42 42 H 1.09002 * 109.47748 * 177.59327 * 23 22 21 43 43 H 1.09002 * 109.47878 * 297.60918 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1184 -0.8114 1.1921 5 7 4.5865 -0.7677 1.2219 6 6 5.1301 -1.8770 2.0169 7 6 4.8242 -3.1837 1.3313 8 1 4.2799 -3.1896 0.3985 9 6 5.2381 -4.3716 1.8955 10 7 5.9005 -4.3644 3.0317 11 14 4.8583 -5.9914 1.0460 12 1 5.9647 -6.3343 0.1168 13 1 4.7170 -7.0630 2.0642 14 1 3.5914 -5.8644 0.2818 15 6 5.0644 0.5261 1.7273 16 6 6.5426 0.6978 1.3717 17 8 6.6885 0.7447 -0.0491 18 6 8.0460 0.7961 -0.4925 19 1 8.5709 1.5923 0.0354 20 6 8.0811 1.0723 -1.9979 21 6 9.5362 1.0663 -2.4765 22 6 10.1747 -0.2789 -2.1171 23 6 10.0586 -0.5029 -0.6071 24 8 8.6829 -0.4545 -0.2238 25 1 2.9709 1.0256 0.0766 26 1 2.9716 -0.4453 -0.9257 27 1 2.7875 -1.8455 1.0956 28 1 2.7234 -0.3883 2.1157 29 1 6.2096 -1.7606 2.1122 30 1 4.6752 -1.8711 3.0075 31 1 6.1920 -5.2001 3.4284 32 1 4.4856 1.3300 1.2727 33 1 4.9449 0.5597 2.8102 34 1 6.9153 1.6256 1.8060 35 1 7.1117 -0.1432 1.7679 36 1 7.5216 0.2983 -2.5234 37 1 7.6352 2.0462 -2.2001 38 1 9.5652 1.2067 -3.5570 39 1 10.0841 1.8720 -1.9879 40 1 9.6575 -1.0802 -2.6450 41 1 11.2258 -0.2718 -2.4056 42 1 10.4732 -1.4780 -0.3515 43 1 10.6103 0.2760 -0.0807 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193079079.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:19 Heat of formation + Delta-G solvation = -72.750213 kcal Electronic energy + Delta-G solvation = -22805.217415 eV Core-core repulsion = 19464.395519 eV Total energy + Delta-G solvation = -3340.821896 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.44666 -37.71752 -36.53245 -35.71779 -33.61569 -32.62177 -31.39143 -30.25903 -28.64955 -26.22744 -24.62463 -23.17211 -22.98909 -22.41224 -20.31281 -19.69900 -17.24751 -17.05056 -16.59985 -16.27360 -15.71571 -15.02448 -14.89421 -14.67173 -14.49908 -14.18836 -13.75962 -13.54840 -13.32469 -12.92101 -12.70311 -12.61399 -12.47097 -12.22878 -11.90113 -11.79554 -11.55053 -11.28897 -11.16254 -11.05740 -10.97340 -10.72510 -10.63822 -10.50050 -10.37091 -10.17411 -9.77741 -9.32713 -9.29488 -9.14448 -8.37927 -7.25443 -5.97964 -3.97783 3.03947 3.08039 3.36608 3.42371 3.45915 3.60753 4.19777 4.26704 4.49008 4.74841 4.78415 4.91299 5.02920 5.06390 5.07272 5.35341 5.38158 5.46056 5.50970 5.58659 5.64645 5.69252 5.72293 5.74964 5.84870 5.92330 5.93544 6.00875 6.03192 6.15495 6.27206 6.36469 6.41854 6.63289 7.26098 7.31491 7.36215 7.63046 7.83029 7.87146 8.11516 8.20083 8.56662 9.08776 9.65832 11.13113 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.010052 B = 0.005961 C = 0.004303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2784.723789 B = 4695.953310 C = 6505.106816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C 0.220 3.780 3 C -0.025 4.025 4 C 0.066 3.934 5 N -0.523 5.523 6 C 0.193 3.807 7 C -0.502 4.502 8 H 0.064 0.936 9 C 0.056 3.944 10 N -0.899 5.899 11 Si 0.894 3.106 12 H -0.281 1.281 13 H -0.289 1.289 14 H -0.274 1.274 15 C 0.053 3.947 16 C 0.069 3.931 17 O -0.344 6.344 18 C 0.256 3.744 19 H 0.041 0.959 20 C -0.140 4.140 21 C -0.119 4.119 22 C -0.160 4.160 23 C 0.071 3.929 24 O -0.390 6.390 25 H 0.101 0.899 26 H 0.116 0.884 27 H 0.095 0.905 28 H 0.027 0.973 29 H 0.037 0.963 30 H -0.010 1.010 31 H 0.260 0.740 32 H 0.069 0.931 33 H 0.042 0.958 34 H 0.039 0.961 35 H 0.068 0.932 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.061 0.939 40 H 0.076 0.924 41 H 0.072 0.928 42 H 0.095 0.905 43 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.589 12.942 -7.367 17.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.139 5.139 2 C -0.098 4.098 3 C -0.066 4.066 4 C -0.064 4.064 5 N -0.248 5.248 6 C 0.069 3.931 7 C -0.541 4.541 8 H 0.082 0.918 9 C -0.145 4.145 10 N -0.539 5.539 11 Si 0.722 3.278 12 H -0.207 1.207 13 H -0.215 1.215 14 H -0.199 1.199 15 C -0.075 4.075 16 C -0.008 4.008 17 O -0.263 6.263 18 C 0.159 3.841 19 H 0.058 0.942 20 C -0.178 4.178 21 C -0.156 4.156 22 C -0.198 4.198 23 C -0.006 4.006 24 O -0.311 6.311 25 H 0.119 0.881 26 H 0.134 0.866 27 H 0.113 0.887 28 H 0.045 0.955 29 H 0.055 0.945 30 H 0.007 0.993 31 H 0.070 0.930 32 H 0.087 0.913 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.086 0.914 36 H 0.102 0.898 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.080 0.920 40 H 0.094 0.906 41 H 0.090 0.910 42 H 0.113 0.887 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 6.879 12.614 -7.749 16.325 hybrid contribution 0.487 -0.672 0.542 0.991 sum 7.366 11.942 -7.208 15.774 Atomic orbital electron populations 1.81151 1.13332 1.09786 1.09605 1.29492 0.95538 0.92328 0.92393 1.19420 0.80032 1.03593 1.03557 1.21874 0.89742 1.01225 0.93554 1.61979 1.05641 1.02060 1.55072 1.19782 0.95624 0.87281 0.90432 1.21126 1.35444 0.90019 1.07494 0.91783 1.24943 0.95367 0.99168 0.94976 1.69949 1.38809 1.26913 1.18216 0.86556 0.78757 0.83307 0.79138 1.20667 1.21481 1.19884 1.22113 0.94282 0.93912 0.97223 1.22585 0.97683 0.99562 0.80976 1.88074 1.21980 1.93666 1.22568 1.22796 0.82669 0.85269 0.93348 0.94151 1.21996 0.97165 1.03464 0.95133 1.21575 0.95267 0.97354 1.01419 1.22252 1.01316 0.98400 0.97820 1.22452 0.82375 1.02262 0.93473 1.88011 1.23704 1.36126 1.83230 0.88085 0.86632 0.88656 0.95477 0.94471 0.99268 0.93048 0.91276 0.94002 0.94304 0.91404 0.89782 0.90518 0.91086 0.91982 0.90572 0.90971 0.88655 0.93669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -8.09 18.54 42.15 0.78 -7.31 16 2 C 0.22 3.35 15.43 -20.76 -0.32 3.03 16 3 C -0.03 -0.35 5.84 -29.52 -0.17 -0.52 16 4 C 0.07 1.15 4.76 -3.82 -0.02 1.13 16 5 N -0.52 -10.28 4.31 -236.07 -1.02 -11.30 16 6 C 0.19 4.79 4.57 -4.98 -0.02 4.77 16 7 C -0.50 -13.69 8.23 -34.44 -0.28 -13.97 16 8 H 0.06 1.73 7.32 -52.49 -0.38 1.34 16 9 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 10 N -0.90 -26.40 13.29 55.43 0.74 -25.67 16 11 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 13 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 14 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 15 C 0.05 0.86 5.18 -3.82 -0.02 0.84 16 16 C 0.07 1.11 6.00 37.16 0.22 1.33 16 17 O -0.34 -5.75 10.19 -59.04 -0.60 -6.35 16 18 C 0.26 3.67 3.17 37.21 0.12 3.79 16 19 H 0.04 0.51 8.10 -51.93 -0.42 0.09 16 20 C -0.14 -1.63 5.79 -26.59 -0.15 -1.78 16 21 C -0.12 -1.10 6.03 -26.55 -0.16 -1.26 16 22 C -0.16 -1.60 6.14 -26.59 -0.16 -1.76 16 23 C 0.07 0.86 6.84 37.21 0.25 1.12 16 24 O -0.39 -6.53 10.15 -59.04 -0.60 -7.13 16 25 H 0.10 1.16 6.73 -51.93 -0.35 0.81 16 26 H 0.12 1.54 8.14 -51.93 -0.42 1.12 16 27 H 0.10 1.89 6.58 -51.93 -0.34 1.55 16 28 H 0.03 0.45 7.99 -51.93 -0.42 0.04 16 29 H 0.04 1.00 6.37 -51.93 -0.33 0.67 16 30 H -0.01 -0.28 8.12 -51.93 -0.42 -0.70 16 31 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 32 H 0.07 0.94 6.53 -51.93 -0.34 0.60 16 33 H 0.04 0.67 8.05 -51.93 -0.42 0.25 16 34 H 0.04 0.52 8.14 -51.92 -0.42 0.09 16 35 H 0.07 1.30 6.12 -51.93 -0.32 0.98 16 36 H 0.08 1.11 8.14 -51.92 -0.42 0.69 16 37 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 43 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 352.39 15.07 5.31 5.31 Total: -1.00 -31.96 352.39 -8.33 -40.28 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: -7.10 Total: -2.71 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: -0.82 Total: -1.80 kcal Atomic # 7 Polarization: -44.77 SS G_CDS: 0.50 Total: -44.27 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: -1.20 Total: -13.48 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.96 -8.33 -40.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193079079.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.467 kcal (2) G-P(sol) polarization free energy of solvation -31.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds