Wall clock time and date at job start Tue Mar 31 2020 06:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53004 * 109.46942 * 304.27150 * 3 2 1 5 5 N 1.46905 * 109.47111 * 182.16599 * 4 3 2 6 6 C 1.46902 * 110.99737 * 200.13241 * 5 4 3 7 7 C 1.50699 * 109.47544 * 66.04565 * 6 5 4 8 8 H 1.07999 * 119.99846 * 359.97438 * 7 6 5 9 9 C 1.37871 * 119.99926 * 180.02562 * 7 6 5 10 10 N 1.31515 * 120.00182 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99984 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.46944 * 89.99778 * 11 9 7 13 13 H 1.48498 * 109.47053 * 209.99385 * 11 9 7 14 14 H 1.48500 * 109.47244 * 330.00035 * 11 9 7 15 15 C 1.46897 * 110.99830 * 76.17487 * 5 4 3 16 16 C 1.53003 * 109.46635 * 196.33377 * 15 5 4 17 17 O 1.42898 * 109.47490 * 63.89611 * 16 15 5 18 18 C 1.42899 * 113.99794 * 184.75112 * 17 16 15 19 19 H 1.09000 * 109.47821 * 309.17426 * 18 17 16 20 20 C 1.53098 * 109.47698 * 189.16089 * 18 17 16 21 21 C 1.53177 * 109.16265 * 182.40432 * 20 18 17 22 22 C 1.53181 * 109.03517 * 56.97847 * 21 20 18 23 23 C 1.53092 * 109.16320 * 303.02150 * 22 21 20 24 24 O 1.42894 * 109.48682 * 69.20386 * 18 17 16 25 25 H 1.08998 * 109.47076 * 184.27484 * 3 2 1 26 26 H 1.08997 * 109.47153 * 64.26870 * 3 2 1 27 27 H 1.09001 * 109.47001 * 62.16347 * 4 3 2 28 28 H 1.08995 * 109.46992 * 302.16848 * 4 3 2 29 29 H 1.08998 * 109.46437 * 186.04807 * 6 5 4 30 30 H 1.09001 * 109.46802 * 306.03835 * 6 5 4 31 31 H 0.96998 * 120.00422 * 180.02562 * 10 9 7 32 32 H 1.08995 * 109.47401 * 316.32839 * 15 5 4 33 33 H 1.09002 * 109.46987 * 76.33607 * 15 5 4 34 34 H 1.09007 * 109.46714 * 183.89679 * 16 15 5 35 35 H 1.09003 * 109.47048 * 303.89305 * 16 15 5 36 36 H 1.09009 * 109.52038 * 302.30981 * 20 18 17 37 37 H 1.09002 * 109.52616 * 62.49778 * 20 18 17 38 38 H 1.09001 * 109.54131 * 176.84255 * 21 20 18 39 39 H 1.08994 * 109.54712 * 297.11423 * 21 20 18 40 40 H 1.09002 * 109.52172 * 62.92543 * 22 21 20 41 41 H 1.09000 * 109.52157 * 183.05142 * 22 21 20 42 42 H 1.09002 * 109.47748 * 177.59327 * 23 22 21 43 43 H 1.09002 * 109.47878 * 297.60918 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1184 -0.8114 1.1921 5 7 4.5865 -0.7677 1.2219 6 6 5.1301 -1.8770 2.0169 7 6 4.8242 -3.1837 1.3313 8 1 4.2799 -3.1896 0.3985 9 6 5.2381 -4.3716 1.8955 10 7 5.9005 -4.3644 3.0317 11 14 4.8583 -5.9914 1.0460 12 1 5.9647 -6.3343 0.1168 13 1 4.7170 -7.0630 2.0642 14 1 3.5914 -5.8644 0.2818 15 6 5.0644 0.5261 1.7273 16 6 6.5426 0.6978 1.3717 17 8 6.6885 0.7447 -0.0491 18 6 8.0460 0.7961 -0.4925 19 1 8.5709 1.5923 0.0354 20 6 8.0811 1.0723 -1.9979 21 6 9.5362 1.0663 -2.4765 22 6 10.1747 -0.2789 -2.1171 23 6 10.0586 -0.5029 -0.6071 24 8 8.6829 -0.4545 -0.2238 25 1 2.9709 1.0256 0.0766 26 1 2.9716 -0.4453 -0.9257 27 1 2.7875 -1.8455 1.0956 28 1 2.7234 -0.3883 2.1157 29 1 6.2096 -1.7606 2.1122 30 1 4.6752 -1.8711 3.0075 31 1 6.1920 -5.2001 3.4284 32 1 4.4856 1.3300 1.2727 33 1 4.9449 0.5597 2.8102 34 1 6.9153 1.6256 1.8060 35 1 7.1117 -0.1432 1.7679 36 1 7.5216 0.2983 -2.5234 37 1 7.6352 2.0462 -2.2001 38 1 9.5652 1.2067 -3.5570 39 1 10.0841 1.8720 -1.9879 40 1 9.6575 -1.0802 -2.6450 41 1 11.2258 -0.2718 -2.4056 42 1 10.4732 -1.4780 -0.3515 43 1 10.6103 0.2760 -0.0807 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193079079.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:19 Heat of formation + Delta-G solvation = -93.660090 kcal Electronic energy + Delta-G solvation = -22806.124135 eV Core-core repulsion = 19464.395519 eV Total energy + Delta-G solvation = -3341.728616 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.50229 -39.12815 -37.76112 -37.08940 -34.69156 -34.55134 -32.65520 -31.43119 -30.13355 -27.96831 -25.57836 -24.82793 -24.09300 -23.83923 -21.41459 -21.01856 -18.68604 -18.27331 -18.20041 -17.60759 -16.89128 -16.47415 -16.36341 -16.12487 -15.58400 -15.23875 -15.08166 -14.93131 -14.60549 -14.21189 -14.03890 -13.87814 -13.70670 -13.54936 -13.39441 -13.23111 -13.09597 -12.70546 -12.52677 -12.38495 -12.23485 -12.08164 -12.03921 -11.82480 -11.68132 -11.45880 -11.28932 -11.15193 -10.59670 -10.48540 -10.32693 -8.88695 -8.13796 -6.20450 1.42398 1.43556 1.53530 1.78152 1.85741 2.44022 2.54910 2.96902 3.16969 3.20238 3.63881 3.89601 3.95804 4.06444 4.08163 4.14592 4.20482 4.29814 4.42272 4.44451 4.51827 4.65245 4.68980 4.75806 4.83006 4.88096 4.93100 5.01653 5.10667 5.12899 5.14960 5.17814 5.20836 5.35895 5.40890 5.43419 5.73158 6.14472 6.24328 6.42572 6.53571 6.62656 6.75554 6.95577 7.47791 8.97319 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.010052 B = 0.005961 C = 0.004303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2784.723789 B = 4695.953310 C = 6505.106816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C 0.244 3.756 3 C -0.008 4.008 4 C 0.066 3.934 5 N -0.528 5.528 6 C 0.212 3.788 7 C -0.512 4.512 8 H 0.064 0.936 9 C 0.003 3.997 10 N -0.935 5.935 11 Si 0.958 3.042 12 H -0.277 1.277 13 H -0.285 1.285 14 H -0.265 1.265 15 C 0.051 3.949 16 C 0.073 3.927 17 O -0.362 6.362 18 C 0.245 3.755 19 H 0.061 0.939 20 C -0.136 4.136 21 C -0.113 4.113 22 C -0.156 4.156 23 C 0.062 3.938 24 O -0.436 6.436 25 H 0.136 0.864 26 H 0.125 0.875 27 H 0.064 0.936 28 H 0.035 0.965 29 H 0.008 0.992 30 H -0.038 1.038 31 H 0.261 0.739 32 H 0.107 0.893 33 H 0.044 0.956 34 H 0.074 0.926 35 H 0.026 0.974 36 H 0.061 0.939 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.080 0.920 40 H 0.057 0.943 41 H 0.099 0.901 42 H 0.088 0.912 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.985 14.712 -9.042 19.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.179 5.179 2 C -0.073 4.073 3 C -0.048 4.048 4 C -0.063 4.063 5 N -0.252 5.252 6 C 0.086 3.914 7 C -0.550 4.550 8 H 0.082 0.918 9 C -0.195 4.195 10 N -0.576 5.576 11 Si 0.783 3.217 12 H -0.203 1.203 13 H -0.211 1.211 14 H -0.189 1.189 15 C -0.077 4.077 16 C -0.004 4.004 17 O -0.281 6.281 18 C 0.150 3.850 19 H 0.078 0.922 20 C -0.173 4.173 21 C -0.151 4.151 22 C -0.194 4.194 23 C -0.014 4.014 24 O -0.358 6.358 25 H 0.153 0.847 26 H 0.142 0.858 27 H 0.083 0.917 28 H 0.053 0.947 29 H 0.026 0.974 30 H -0.020 1.020 31 H 0.070 0.930 32 H 0.125 0.875 33 H 0.062 0.938 34 H 0.091 0.909 35 H 0.044 0.956 36 H 0.080 0.920 37 H 0.113 0.887 38 H 0.108 0.892 39 H 0.099 0.901 40 H 0.076 0.924 41 H 0.117 0.883 42 H 0.106 0.894 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.270 14.404 -9.443 18.695 hybrid contribution 0.420 -1.179 1.093 1.661 sum 7.690 13.226 -8.350 17.429 Atomic orbital electron populations 1.81184 1.14581 1.11256 1.10840 1.29610 0.95504 0.91024 0.91182 1.19328 0.78746 1.04788 1.01906 1.21815 0.88347 1.00406 0.95775 1.61856 1.06959 1.02260 1.54119 1.19341 0.93802 0.88697 0.89567 1.21484 1.34818 0.91324 1.07413 0.91794 1.25786 0.95323 1.02764 0.95632 1.70074 1.40060 1.27756 1.19709 0.85555 0.78839 0.79119 0.78161 1.20258 1.21063 1.18911 1.22277 0.94912 0.92836 0.97690 1.22507 0.97123 0.99502 0.81266 1.88020 1.23893 1.93739 1.22423 1.23196 0.81721 0.84933 0.95179 0.92200 1.22015 0.98871 1.03537 0.92909 1.21596 0.93531 0.97232 1.02697 1.22225 1.02877 0.98482 0.95802 1.22685 0.80641 1.02727 0.95392 1.87947 1.26010 1.37754 1.84117 0.84675 0.85756 0.91702 0.94719 0.97432 1.02033 0.93015 0.87476 0.93834 0.90853 0.95588 0.92045 0.88656 0.89198 0.90090 0.92368 0.88286 0.89379 0.91693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -16.92 18.54 20.01 0.37 -16.55 16 2 C 0.24 6.94 15.43 89.44 1.38 8.32 16 3 C -0.01 -0.18 5.84 28.79 0.17 -0.02 16 4 C 0.07 2.25 4.76 86.30 0.41 2.66 16 5 N -0.53 -20.71 4.31 -900.79 -3.88 -24.59 16 6 C 0.21 10.92 4.57 85.56 0.39 11.31 16 7 C -0.51 -28.67 8.23 25.60 0.21 -28.46 16 8 H 0.06 3.50 7.32 -2.91 -0.02 3.48 16 9 C 0.00 0.14 5.46 84.65 0.46 0.61 16 10 N -0.93 -56.64 13.29 21.45 0.28 -56.36 16 11 Si 0.96 45.11 29.54 68.60 2.03 47.14 16 12 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 13 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 14 H -0.26 -11.97 7.11 99.48 0.71 -11.27 16 15 C 0.05 1.57 5.18 86.30 0.45 2.02 16 16 C 0.07 2.31 6.00 71.98 0.43 2.75 16 17 O -0.36 -11.72 10.19 -126.21 -1.29 -13.01 16 18 C 0.25 6.82 3.17 72.01 0.23 7.04 16 19 H 0.06 1.40 8.10 -2.39 -0.02 1.38 16 20 C -0.14 -2.92 5.79 30.69 0.18 -2.74 16 21 C -0.11 -1.78 6.03 30.71 0.19 -1.59 16 22 C -0.16 -2.88 6.14 30.69 0.19 -2.69 16 23 C 0.06 1.47 6.84 72.01 0.49 1.96 16 24 O -0.44 -14.90 10.15 -126.21 -1.28 -16.18 16 25 H 0.14 2.50 6.73 -2.39 -0.02 2.48 16 26 H 0.12 2.98 8.14 -2.39 -0.02 2.96 16 27 H 0.06 2.60 6.58 -2.39 -0.02 2.58 16 28 H 0.03 1.12 7.99 -2.39 -0.02 1.10 16 29 H 0.01 0.44 6.37 -2.39 -0.02 0.42 16 30 H -0.04 -2.12 8.12 -2.39 -0.02 -2.14 16 31 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 32 H 0.11 2.52 6.53 -2.39 -0.02 2.50 16 33 H 0.04 1.35 8.05 -2.39 -0.02 1.33 16 34 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 35 H 0.03 1.04 6.12 -2.39 -0.01 1.02 16 36 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 37 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 43 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -72.30 352.39 2.39 -69.91 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: 0.98 Total: 8.47 kcal Atomic # 6 Polarization: -4.00 SS G_CDS: 5.17 Total: 1.18 kcal Atomic # 7 Polarization: -94.27 SS G_CDS: -3.23 Total: -97.50 kcal Atomic # 8 Polarization: -26.63 SS G_CDS: -2.57 Total: -29.19 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -72.30 2.39 -69.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193079079.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.750 kcal (2) G-P(sol) polarization free energy of solvation -72.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds