Wall clock time and date at job start Tue Mar 31 2020 05:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.81411 * 102.99718 * 2 1 4 4 H 1.09001 * 108.81295 * 306.52427 * 3 2 1 5 5 C 1.45875 * 108.84079 * 65.00170 * 3 2 1 6 6 C 1.54522 * 111.66927 * 182.31996 * 5 3 2 7 7 C 1.50546 * 108.96075 * 282.70558 * 6 5 3 8 8 C 1.54050 * 112.86231 * 91.61615 * 7 6 5 9 9 N 1.47942 * 113.41909 * 317.93237 * 8 7 6 10 10 C 1.46901 * 111.00380 * 192.12283 * 9 8 7 11 11 C 1.53005 * 109.46916 * 317.41002 * 10 9 8 12 12 H 1.09011 * 109.46951 * 304.99732 * 11 10 9 13 13 C 1.47201 * 109.47261 * 64.99459 * 11 10 9 14 14 N 7.47302 * 129.85516 * 359.33021 * 2 1 3 15 15 C 1.52998 * 109.46963 * 184.99898 * 11 10 9 16 16 C 1.50704 * 109.46960 * 174.99679 * 15 11 10 17 17 H 1.08004 * 119.99637 * 359.97438 * 16 15 11 18 18 C 1.37875 * 120.00158 * 179.97438 * 16 15 11 19 19 N 1.31517 * 119.99999 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 119.99665 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.47059 * 90.00222 * 20 18 16 22 22 H 1.48503 * 109.46978 * 209.99632 * 20 18 16 23 23 H 1.48497 * 109.47002 * 329.99813 * 20 18 16 24 24 C 1.44298 * 113.64385 * 318.07538 * 9 8 7 25 25 H 1.08997 * 109.47408 * 300.00043 * 1 2 3 26 26 H 1.09003 * 109.46657 * 60.00076 * 1 2 3 27 27 H 1.09000 * 109.46954 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.04542 * 61.75151 * 5 3 2 29 29 H 1.09000 * 109.04031 * 302.87913 * 5 3 2 30 30 H 1.09002 * 109.57419 * 42.58300 * 6 5 3 31 31 H 1.08998 * 109.57371 * 162.83368 * 6 5 3 32 32 H 1.08998 * 108.78736 * 212.70549 * 7 6 5 33 33 H 1.08998 * 108.78545 * 330.92099 * 7 6 5 34 34 H 1.08994 * 108.72166 * 196.87980 * 8 7 6 35 35 H 1.08999 * 108.61796 * 78.91370 * 8 7 6 36 36 H 1.09001 * 109.46881 * 77.40120 * 10 9 8 37 37 H 1.08996 * 109.47229 * 197.41010 * 10 9 8 38 38 H 1.09001 * 109.47167 * 294.99343 * 15 11 10 39 39 H 1.08999 * 109.47022 * 55.00087 * 15 11 10 40 40 H 0.96997 * 119.99382 * 180.02562 * 19 18 16 41 41 H 1.09003 * 109.70029 * 335.68683 * 24 9 8 42 42 H 1.09007 * 109.70059 * 215.10398 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7676 0.0000 4 1 1.7028 2.2482 -0.8291 5 6 1.7595 2.3579 1.2513 6 6 2.0235 3.8797 1.2961 7 6 3.4801 4.1149 1.5949 8 6 4.3396 4.2393 0.3226 9 7 3.9897 3.2520 -0.7222 10 6 5.0087 3.2211 -1.7799 11 6 5.4273 4.6514 -2.1266 12 1 4.5448 5.2345 -2.3901 13 6 6.0910 5.2638 -0.9641 14 7 6.6031 5.7364 -0.0671 15 6 6.3947 4.6265 -3.3116 16 6 6.7111 6.0389 -3.7315 17 1 6.2662 6.8710 -3.2059 18 6 7.5683 6.2688 -4.7866 19 7 7.8448 7.5014 -5.1527 20 14 8.3371 4.8296 -5.6961 21 1 7.4564 4.4285 -6.8225 22 1 9.6654 5.2309 -6.2250 23 1 8.5006 3.6854 -4.7637 24 6 3.7395 1.9277 -0.2065 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 2.2796 1.8821 2.0826 29 1 0.6892 2.1795 1.3543 30 1 1.7723 4.3225 0.3323 31 1 1.4128 4.3334 2.0767 32 1 3.5754 5.0308 2.1781 33 1 3.8554 3.2821 2.1896 34 1 5.3869 4.1054 0.5933 35 1 4.2124 5.2414 -0.0868 36 1 5.8774 2.6628 -1.4312 37 1 4.5978 2.7379 -2.6663 38 1 7.3144 4.1198 -3.0193 39 1 5.9353 4.0942 -4.1445 40 1 8.4476 7.6631 -5.8952 41 1 4.2552 1.8006 0.7454 42 1 4.0939 1.1828 -0.9190 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000246957191.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:12 Heat of formation + Delta-G solvation = 31.613471 kcal Electronic energy + Delta-G solvation = -20471.793812 eV Core-core repulsion = 17578.250336 eV Total energy + Delta-G solvation = -2893.543476 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.74320 -37.03837 -34.72968 -33.55862 -32.42064 -31.72775 -29.20226 -27.89222 -25.98442 -25.13687 -22.94158 -21.52964 -20.78429 -19.69630 -17.22450 -16.92331 -16.63386 -16.14489 -15.65728 -14.86921 -14.66179 -14.31956 -13.99660 -13.73196 -13.55121 -13.41129 -13.28108 -13.07887 -12.84165 -12.62193 -12.40231 -12.15132 -11.87328 -11.52234 -11.27612 -11.22932 -11.11995 -10.89499 -10.77205 -10.74583 -10.44855 -10.33200 -9.99050 -9.87496 -9.72183 -9.34311 -8.63059 -8.19121 -7.87409 -6.12237 -4.13115 1.46861 2.38182 3.25256 3.34256 3.35013 3.46920 3.51823 3.86771 4.37150 4.52543 4.58403 4.66217 4.81107 4.88221 4.91539 4.93372 5.05612 5.22275 5.25658 5.27546 5.37649 5.41880 5.45374 5.55510 5.63714 5.68422 5.77373 5.95007 5.96126 6.00869 6.04401 6.11718 6.15963 6.27752 6.32203 6.90590 7.03754 7.11860 7.18222 7.61724 8.28108 8.39954 8.90694 9.47614 11.00827 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.023294 B = 0.004083 C = 0.003647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.737543 B = 6855.851884 C = 7674.735447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 S -0.281 6.281 3 C -0.036 4.036 4 H 0.098 0.902 5 C -0.114 4.114 6 C -0.106 4.106 7 C -0.119 4.119 8 C 0.045 3.955 9 N -0.546 5.546 10 C 0.067 3.933 11 C 0.011 3.989 12 H 0.116 0.884 13 C 0.247 3.753 14 N -0.474 5.474 15 C -0.004 4.004 16 C -0.528 4.528 17 H 0.074 0.926 18 C 0.072 3.928 19 N -0.897 5.897 20 Si 0.877 3.123 21 H -0.274 1.274 22 H -0.287 1.287 23 H -0.264 1.264 24 C 0.085 3.915 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.097 0.903 28 H 0.068 0.932 29 H 0.058 0.942 30 H 0.077 0.923 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.056 0.944 34 H 0.047 0.953 35 H 0.081 0.919 36 H 0.041 0.959 37 H 0.097 0.903 38 H 0.024 0.976 39 H 0.036 0.964 40 H 0.265 0.735 41 H 0.051 0.949 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.951 -14.247 10.530 23.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.286 4.286 2 S -0.053 6.053 3 C -0.165 4.165 4 H 0.116 0.884 5 C -0.153 4.153 6 C -0.146 4.146 7 C -0.157 4.157 8 C -0.083 4.083 9 N -0.271 5.271 10 C -0.061 4.061 11 C -0.011 4.011 12 H 0.133 0.867 13 C -0.069 4.069 14 N -0.151 5.151 15 C -0.043 4.043 16 C -0.566 4.566 17 H 0.092 0.908 18 C -0.131 4.131 19 N -0.535 5.535 20 Si 0.704 3.296 21 H -0.199 1.199 22 H -0.213 1.213 23 H -0.189 1.189 24 C -0.045 4.045 25 H 0.094 0.906 26 H 0.095 0.905 27 H 0.116 0.884 28 H 0.087 0.913 29 H 0.077 0.923 30 H 0.096 0.904 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.065 0.935 35 H 0.099 0.901 36 H 0.059 0.941 37 H 0.115 0.885 38 H 0.042 0.958 39 H 0.054 0.946 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -13.811 -14.189 11.544 22.921 hybrid contribution 0.177 0.021 -0.616 0.641 sum -13.633 -14.168 10.929 22.496 Atomic orbital electron populations 1.23368 0.94216 1.06158 1.04893 1.86852 1.07402 1.13014 1.98042 1.22185 1.00739 0.91696 1.01858 0.88373 1.20912 1.00872 0.96470 0.97085 1.21290 0.95962 0.94708 1.02634 1.21422 0.95377 1.01999 0.96904 1.23077 0.97765 0.96396 0.91038 1.60674 1.46133 1.07180 1.13069 1.22355 0.92754 0.96191 0.94845 1.19175 0.99282 0.93541 0.89088 0.86664 1.28833 0.92275 0.92999 0.92804 1.81096 1.11048 1.09390 1.13563 1.19631 0.93877 0.99279 0.91540 1.21013 1.28473 0.90830 1.16296 0.90825 1.24988 0.95820 0.95547 0.96726 1.69907 1.35968 1.19462 1.28140 0.86820 0.79049 0.83258 0.80458 1.19933 1.21324 1.18881 1.21445 0.92262 0.90738 1.00059 0.90595 0.90460 0.88387 0.91332 0.92333 0.90432 0.92034 0.91380 0.92485 0.93520 0.90053 0.94101 0.88485 0.95811 0.94613 0.92548 0.93070 0.90144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.84 10.37 101.05 1.05 0.21 16 2 S -0.28 -2.82 21.57 -107.50 -2.32 -5.14 16 3 C -0.04 -0.35 2.27 -29.59 -0.07 -0.42 16 4 H 0.10 1.04 8.08 -51.89 -0.42 0.62 16 5 C -0.11 -1.04 4.50 -29.30 -0.13 -1.17 16 6 C -0.11 -1.02 5.62 -27.16 -0.15 -1.17 16 7 C -0.12 -1.33 5.29 -27.41 -0.15 -1.47 16 8 C 0.04 0.60 3.56 -2.70 -0.01 0.59 16 9 N -0.55 -6.84 4.16 -234.55 -0.98 -7.82 16 10 C 0.07 0.92 4.61 -3.82 -0.02 0.90 16 11 C 0.01 0.19 1.98 -93.41 -0.18 0.00 16 12 H 0.12 1.94 8.14 -51.92 -0.42 1.51 16 13 C 0.25 4.80 9.38 -20.76 -0.19 4.60 16 14 N -0.47 -9.98 17.33 42.15 0.73 -9.25 16 15 C 0.00 -0.09 3.49 -27.88 -0.10 -0.19 16 16 C -0.53 -14.08 9.15 -34.44 -0.32 -14.40 16 17 H 0.07 2.15 7.84 -52.48 -0.41 1.74 16 18 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 19 N -0.90 -26.93 13.96 55.43 0.77 -26.16 16 20 Si 0.88 20.54 27.47 -169.99 -4.67 15.87 16 21 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.26 -5.86 6.54 56.52 0.37 -5.50 16 24 C 0.08 0.95 4.76 -4.70 -0.02 0.93 16 25 H 0.08 0.48 6.98 -51.93 -0.36 0.12 16 26 H 0.08 0.52 8.14 -51.92 -0.42 0.10 16 27 H 0.10 0.60 8.14 -51.92 -0.42 0.17 16 28 H 0.07 0.65 7.59 -51.93 -0.39 0.25 16 29 H 0.06 0.47 6.55 -51.93 -0.34 0.13 16 30 H 0.08 0.82 7.79 -51.93 -0.40 0.41 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.62 6.67 -51.93 -0.35 0.27 16 34 H 0.05 0.73 5.65 -51.93 -0.29 0.44 16 35 H 0.08 1.23 6.09 -51.93 -0.32 0.92 16 36 H 0.04 0.56 8.07 -51.93 -0.42 0.14 16 37 H 0.10 1.19 8.14 -51.93 -0.42 0.76 16 38 H 0.02 0.51 7.20 -51.93 -0.37 0.14 16 39 H 0.04 0.70 7.57 -51.93 -0.39 0.31 16 40 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 41 H 0.05 0.60 6.80 -51.93 -0.35 0.24 16 42 H 0.08 0.90 7.41 -51.93 -0.38 0.52 16 LS Contribution 333.13 15.07 5.02 5.02 Total: -1.00 -29.79 333.13 -8.74 -38.53 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -6.91 Total: -1.37 kcal Atomic # 6 Polarization: -9.30 SS G_CDS: -0.39 Total: -9.69 kcal Atomic # 7 Polarization: -43.76 SS G_CDS: 0.53 Total: -43.23 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.67 Total: 15.87 kcal Atomic # 16 Polarization: -2.82 SS G_CDS: -2.32 Total: -5.14 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.79 -8.74 -38.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000246957191.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.142 kcal (2) G-P(sol) polarization free energy of solvation -29.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds