Wall clock time and date at job start Tue Mar 31 2020 05:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47169 * 2 1 4 4 N 1.46503 * 109.47149 * 179.97438 * 3 2 1 5 5 C 1.36934 * 120.00194 * 269.51497 * 4 3 2 6 6 H 1.07995 * 119.99568 * 326.09346 * 5 4 3 7 7 C 1.38808 * 120.00081 * 146.09495 * 5 4 3 8 8 N 1.31625 * 119.99795 * 336.59332 * 7 5 4 9 9 Si 1.86797 * 120.00096 * 156.59311 * 7 5 4 10 10 H 1.48504 * 109.47192 * 59.99947 * 9 7 5 11 11 H 1.48504 * 109.47041 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47170 * 299.99660 * 9 7 5 13 13 C 1.46507 * 119.99444 * 89.51285 * 4 3 2 14 14 C 1.50697 * 109.46992 * 90.00230 * 13 4 3 15 15 N 1.29030 * 124.91833 * 89.95473 * 14 13 4 16 16 C 1.31776 * 117.12357 * 180.02562 * 15 14 13 17 17 C 1.33638 * 114.50448 * 359.97438 * 16 15 14 18 18 C 1.50696 * 126.03875 * 180.02562 * 17 16 15 19 19 C 1.53002 * 109.47288 * 59.98548 * 18 17 16 20 20 C 1.53005 * 109.47155 * 179.97438 * 18 17 16 21 21 C 1.53000 * 109.47019 * 299.98367 * 18 17 16 22 22 S 1.70980 * 124.91550 * 269.99677 * 14 13 4 23 23 H 1.09003 * 109.46746 * 299.99662 * 1 2 3 24 24 H 1.08995 * 109.47237 * 59.99495 * 1 2 3 25 25 H 1.09003 * 109.46967 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47231 * 240.00123 * 2 1 3 27 27 H 1.09003 * 109.47586 * 120.00470 * 2 1 3 28 28 H 1.09003 * 109.47011 * 60.00501 * 3 2 1 29 29 H 1.08993 * 109.46785 * 300.00054 * 3 2 1 30 30 H 0.97000 * 119.99942 * 180.02562 * 8 7 5 31 31 H 1.08991 * 109.47162 * 329.99747 * 13 4 3 32 32 H 1.08998 * 109.46417 * 209.99971 * 13 4 3 33 33 H 1.08005 * 122.75109 * 180.02562 * 16 15 14 34 34 H 1.08993 * 109.47130 * 59.99973 * 19 18 17 35 35 H 1.09003 * 109.46822 * 179.97438 * 19 18 17 36 36 H 1.09000 * 109.46602 * 299.99682 * 19 18 17 37 37 H 1.08997 * 109.46888 * 59.99649 * 20 18 17 38 38 H 1.08997 * 109.47026 * 180.02562 * 20 18 17 39 39 H 1.09002 * 109.46956 * 299.99700 * 20 18 17 40 40 H 1.08998 * 109.47060 * 60.00100 * 21 18 17 41 41 H 1.09003 * 109.47251 * 180.02562 * 21 18 17 42 42 H 1.09001 * 109.47028 * 299.99949 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1892 1.4527 1.1867 6 1 3.7866 1.9818 2.0377 7 6 5.4003 0.7831 1.2952 8 7 5.6790 -0.2095 0.4769 9 14 6.6344 1.2906 2.6023 10 1 6.0209 1.1424 3.9466 11 1 7.8376 0.4251 2.5098 12 1 7.0257 2.7073 2.3903 13 6 4.2380 1.4315 -1.2679 14 6 4.4893 2.8485 -1.7150 15 7 5.5282 3.5478 -1.4042 16 6 5.5910 4.7748 -1.8807 17 6 4.5474 5.1302 -2.6360 18 6 4.3529 6.4651 -3.3078 19 6 5.5062 6.7194 -4.2805 20 6 3.0296 6.4614 -4.0759 21 6 4.3253 7.5695 -2.2493 22 16 3.4386 3.7627 -2.7069 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 1.6767 1.9563 0.8901 29 1 1.6767 1.9563 -0.8899 30 1 6.5251 -0.6777 0.5529 31 1 3.6492 0.9112 -2.0232 32 1 5.1903 0.9189 -1.1327 33 1 6.4186 5.4386 -1.6783 34 1 5.5258 5.9326 -5.0345 35 1 5.3652 7.6847 -4.7667 36 1 6.4489 6.7220 -3.7333 37 1 2.2079 6.2801 -3.3831 38 1 2.8892 7.4267 -4.5622 39 1 3.0494 5.6746 -4.8300 40 1 5.2681 7.5720 -1.7023 41 1 4.1842 8.5350 -2.7352 42 1 3.5036 7.3883 -1.5564 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279828552.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:52 Heat of formation + Delta-G solvation = 38.906225 kcal Electronic energy + Delta-G solvation = -20529.433608 eV Core-core repulsion = 17636.206370 eV Total energy + Delta-G solvation = -2893.227238 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.16872 -36.91265 -35.95024 -32.92468 -31.03967 -29.25558 -27.41740 -27.25243 -26.56571 -25.57818 -23.56100 -21.86885 -20.56748 -19.98168 -18.02410 -17.33900 -16.52410 -15.30043 -14.77225 -14.53212 -14.29299 -14.05839 -13.85545 -13.61024 -13.43817 -12.99259 -12.81020 -12.48564 -12.23069 -12.21064 -11.70561 -11.53244 -11.44677 -11.30129 -11.17809 -11.02908 -10.94381 -10.72058 -10.60518 -10.43250 -10.34226 -10.09996 -9.99120 -9.71942 -8.67793 -8.57352 -8.48787 -8.04317 -6.74473 -5.85550 -3.35663 1.45291 2.07613 2.53719 3.41388 3.47153 3.54193 3.64485 4.50969 4.69702 4.89306 4.97229 5.11259 5.37018 5.41327 5.45365 5.54929 5.58688 5.72932 5.74313 5.80239 5.82090 5.84593 5.97882 6.05155 6.09225 6.11213 6.17985 6.23735 6.30581 6.36158 6.45774 6.54138 6.58750 6.66774 6.95505 7.01005 7.21839 7.49969 7.79254 8.41227 8.69622 9.08178 9.74102 10.26297 11.16762 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.015289 B = 0.006102 C = 0.004785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.958287 B = 4587.376265 C = 5849.926813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.139 4.139 3 C 0.146 3.854 4 N -0.565 5.565 5 C -0.258 4.258 6 H 0.062 0.938 7 C 0.023 3.977 8 N -0.881 5.881 9 Si 0.900 3.100 10 H -0.283 1.283 11 H -0.290 1.290 12 H -0.280 1.280 13 C 0.201 3.799 14 C 0.086 3.914 15 N -0.473 5.473 16 C 0.045 3.955 17 C -0.240 4.240 18 C 0.016 3.984 19 C -0.134 4.134 20 C -0.145 4.145 21 C -0.135 4.135 22 S 0.052 5.948 23 H 0.047 0.953 24 H 0.045 0.955 25 H 0.043 0.957 26 H 0.052 0.948 27 H 0.065 0.935 28 H 0.045 0.955 29 H 0.033 0.967 30 H 0.258 0.742 31 H 0.048 0.952 32 H 0.131 0.869 33 H 0.157 0.843 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.057 0.943 41 H 0.056 0.944 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.236 10.184 -8.851 14.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.179 4.179 3 C 0.020 3.980 4 N -0.283 5.283 5 C -0.387 4.387 6 H 0.079 0.921 7 C -0.178 4.178 8 N -0.523 5.523 9 Si 0.729 3.271 10 H -0.209 1.209 11 H -0.216 1.216 12 H -0.206 1.206 13 C 0.070 3.930 14 C -0.195 4.195 15 N -0.186 5.186 16 C -0.107 4.107 17 C -0.362 4.362 18 C 0.013 3.987 19 C -0.192 4.192 20 C -0.203 4.203 21 C -0.193 4.193 22 S 0.309 5.691 23 H 0.066 0.934 24 H 0.064 0.936 25 H 0.063 0.937 26 H 0.071 0.929 27 H 0.084 0.916 28 H 0.063 0.937 29 H 0.052 0.948 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.148 0.852 33 H 0.174 0.826 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.665 9.553 -8.953 14.266 hybrid contribution 1.443 0.919 0.921 1.943 sum -4.222 10.472 -8.031 13.856 Atomic orbital electron populations 1.21754 0.97620 1.00426 1.00744 1.22050 0.93152 1.00331 1.02329 1.21001 0.84603 0.93883 0.98515 1.43788 0.99554 1.83306 1.01663 1.18942 1.03409 1.26453 0.89919 0.92067 1.24995 1.00112 0.94598 0.98076 1.69898 1.23740 1.18875 1.39777 0.86420 0.80908 0.78695 0.81081 1.20935 1.21576 1.20583 1.19928 1.02062 0.84316 0.86658 1.29532 0.90718 1.04124 0.95164 1.66337 1.24066 1.05254 1.22991 1.21591 0.98703 0.93102 0.97324 1.25589 0.99890 1.00294 1.10407 1.18859 0.96018 0.89386 0.94389 1.21875 0.97500 1.01183 0.98679 1.21956 0.96259 1.01842 1.00207 1.21882 1.02386 0.96862 0.98187 1.83706 1.28091 1.07066 1.50271 0.93392 0.93626 0.93740 0.92904 0.91603 0.93684 0.94815 0.93216 0.93351 0.85248 0.82606 0.92516 0.92450 0.92408 0.92221 0.92191 0.92254 0.92402 0.92459 0.92480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 9.91 37.16 0.37 -1.85 16 2 C -0.14 -2.64 6.26 -26.73 -0.17 -2.81 16 3 C 0.15 3.02 5.67 -4.04 -0.02 2.99 16 4 N -0.56 -13.76 2.44 -174.61 -0.43 -14.18 16 5 C -0.26 -6.99 9.48 -15.06 -0.14 -7.13 16 6 H 0.06 1.68 7.93 -52.49 -0.42 1.27 16 7 C 0.02 0.64 4.94 -17.43 -0.09 0.56 16 8 N -0.88 -24.85 11.34 55.49 0.63 -24.22 16 9 Si 0.90 22.24 29.61 -169.99 -5.03 17.21 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 12 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 13 C 0.20 4.74 5.88 -5.19 -0.03 4.71 16 14 C 0.09 1.87 6.97 -13.46 -0.09 1.78 16 15 N -0.47 -10.73 10.54 -11.86 -0.13 -10.85 16 16 C 0.04 0.83 10.62 -19.19 -0.20 0.63 16 17 C -0.24 -3.92 5.15 -35.92 -0.19 -4.10 16 18 C 0.02 0.20 0.93 -155.66 -0.14 0.06 16 19 C -0.13 -1.46 8.35 37.16 0.31 -1.15 16 20 C -0.14 -1.62 7.59 37.16 0.28 -1.34 16 21 C -0.14 -1.55 8.35 37.16 0.31 -1.24 16 22 S 0.05 0.92 21.82 -107.50 -2.35 -1.43 16 23 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 24 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 27 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 28 H 0.04 0.93 8.03 -51.93 -0.42 0.51 16 29 H 0.03 0.64 8.08 -51.93 -0.42 0.22 16 30 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 31 H 0.05 1.04 8.07 -51.93 -0.42 0.63 16 32 H 0.13 3.49 5.33 -51.93 -0.28 3.21 16 33 H 0.16 2.56 8.06 -52.48 -0.42 2.14 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.63 8.00 -51.93 -0.42 0.22 16 37 H 0.06 0.70 8.00 -51.93 -0.42 0.29 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.68 8.00 -51.93 -0.42 0.26 16 40 H 0.06 0.67 8.00 -51.93 -0.42 0.25 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 354.38 15.07 5.34 5.34 Total: -1.00 -28.95 354.38 -9.16 -38.12 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -7.40 Total: -1.07 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: 0.19 Total: -8.91 kcal Atomic # 7 Polarization: -49.34 SS G_CDS: 0.08 Total: -49.26 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.03 Total: 17.21 kcal Atomic # 16 Polarization: 0.92 SS G_CDS: -2.35 Total: -1.43 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -28.95 -9.16 -38.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279828552.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.022 kcal (2) G-P(sol) polarization free energy of solvation -28.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds