Wall clock time and date at job start Tue Mar 31 2020 06:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 119.99901 * 2 1 4 4 H 1.48500 * 109.47158 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47319 * 299.99742 * 3 2 1 6 6 H 1.48500 * 109.47265 * 60.00057 * 3 2 1 7 7 C 1.38804 * 120.00063 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00596 * 194.95646 * 7 2 1 9 9 N 1.36945 * 120.00137 * 14.95942 * 7 2 1 10 10 C 1.46919 * 120.62755 * 35.76366 * 9 7 2 11 11 C 1.53196 * 108.77622 * 126.37352 * 10 9 7 12 12 C 1.53040 * 109.31059 * 54.63039 * 11 10 9 13 13 C 1.53005 * 109.45707 * 178.62780 * 12 11 10 14 14 N 1.46498 * 109.47009 * 185.02478 * 13 12 11 15 15 C 1.29036 * 120.00275 * 246.23047 * 14 13 12 16 16 O 1.34917 * 120.00031 * 186.81935 * 15 14 13 17 17 C 1.50699 * 119.99925 * 6.82461 * 15 14 13 18 18 H 1.09006 * 110.27547 * 16.70943 * 17 15 14 19 19 C 1.54946 * 110.31217 * 138.90342 * 17 15 14 20 20 C 1.55308 * 100.94248 * 155.35680 * 19 17 15 21 21 C 1.54375 * 102.25091 * 325.87154 * 20 19 17 22 22 O 1.43232 * 107.59186 * 21.35326 * 21 20 19 23 23 C 1.53033 * 109.54152 * 298.63541 * 12 11 10 24 24 C 1.46920 * 120.63091 * 215.74330 * 9 7 2 25 25 H 0.97007 * 119.99804 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.59030 * 6.58039 * 10 9 7 27 27 H 1.09004 * 109.58678 * 246.15495 * 10 9 7 28 28 H 1.09001 * 109.49306 * 294.67719 * 11 10 9 29 29 H 1.09004 * 109.49810 * 174.58090 * 11 10 9 30 30 H 1.08998 * 109.45788 * 58.66264 * 12 11 10 31 31 H 1.08999 * 109.46974 * 305.03134 * 13 12 11 32 32 H 1.08997 * 109.46886 * 65.02998 * 13 12 11 33 33 H 0.96698 * 114.00078 * 180.02562 * 16 15 14 34 34 H 1.09000 * 111.12853 * 273.28094 * 19 17 15 35 35 H 1.09010 * 111.12267 * 37.44214 * 19 17 15 36 36 H 1.08997 * 110.84666 * 207.67741 * 20 19 17 37 37 H 1.08999 * 111.01754 * 84.14072 * 20 19 17 38 38 H 1.08997 * 109.82916 * 261.83744 * 21 20 19 39 39 H 1.09004 * 109.82840 * 140.86911 * 21 20 19 40 40 H 1.08993 * 109.50366 * 181.31984 * 23 12 11 41 41 H 1.09002 * 109.49786 * 301.41856 * 23 12 11 42 42 H 1.09005 * 109.58530 * 353.41561 * 24 9 7 43 43 H 1.09001 * 109.58837 * 113.69618 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0628 -1.2179 0.2419 9 7 1.3603 -2.3681 -0.3051 10 6 0.2970 -2.3888 -1.3186 11 6 0.6272 -3.4649 -2.3579 12 6 0.8459 -4.8033 -1.6487 13 6 1.1423 -5.8876 -2.6866 14 7 1.2330 -7.1893 -2.0206 15 6 2.3589 -7.8186 -1.9846 16 8 2.4144 -9.0745 -1.4949 17 6 3.6119 -7.1507 -2.4895 18 1 3.4606 -6.0741 -2.5681 19 6 4.8034 -7.4612 -1.5489 20 6 6.0012 -7.2793 -2.5205 21 6 5.4153 -7.7762 -3.8595 22 8 3.9884 -7.6957 -3.7641 23 6 2.0280 -4.6843 -0.6841 24 6 1.7136 -3.6221 0.3740 25 1 -0.4850 0.8401 -0.0004 26 1 0.2378 -1.4158 -1.8062 27 1 -0.6563 -2.6203 -0.8434 28 1 1.5334 -3.1855 -2.8953 29 1 -0.2000 -3.5570 -3.0617 30 1 -0.0521 -5.0699 -1.0914 31 1 0.3411 -5.9123 -3.4252 32 1 2.0873 -5.6668 -3.1829 33 1 3.2997 -9.4632 -1.5084 34 1 4.8519 -6.7465 -0.7273 35 1 4.7526 -8.4839 -1.1750 36 1 6.8462 -7.8959 -2.2141 37 1 6.2929 -6.2314 -2.5897 38 1 5.7165 -8.8091 -4.0343 39 1 5.7677 -7.1441 -4.6746 40 1 2.1980 -5.6443 -0.1967 41 1 2.9211 -4.3935 -1.2373 42 1 2.5893 -3.4628 1.0033 43 1 0.8768 -3.9528 0.9893 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000328749039.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:36 Heat of formation + Delta-G solvation = -49.902180 kcal Electronic energy + Delta-G solvation = -23266.971082 eV Core-core repulsion = 19927.139952 eV Total energy + Delta-G solvation = -3339.831131 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.49622 -38.19152 -37.70147 -35.29926 -32.88903 -32.53750 -30.79234 -29.74349 -29.53922 -26.88706 -24.27002 -23.40287 -22.20104 -22.06601 -21.46647 -19.76566 -19.06886 -18.26351 -17.27417 -16.67907 -15.81931 -15.59971 -14.97531 -14.86437 -14.43058 -13.99673 -13.70328 -13.69381 -13.50789 -13.24454 -13.04710 -12.66351 -12.39129 -12.21624 -12.11327 -11.80969 -11.67782 -11.28457 -11.25150 -11.04200 -10.75828 -10.55962 -10.23881 -10.14685 -10.11805 -9.91998 -9.58242 -9.43815 -9.02568 -8.84852 -8.45965 -6.52382 -5.77243 -3.27483 2.08849 3.32156 3.36320 3.44110 3.46202 3.52169 3.97585 4.11679 4.41621 4.50034 4.63491 4.73926 4.79860 5.19357 5.24103 5.30374 5.38623 5.39625 5.44249 5.46472 5.48976 5.63130 5.65807 5.78465 5.87830 6.04463 6.16064 6.25811 6.39140 6.52242 6.56519 6.65386 6.73289 6.88316 6.88758 7.03956 7.12350 7.37024 7.63554 7.82811 8.11443 8.52410 9.24768 9.86078 10.48995 11.30599 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.023086 B = 0.004201 C = 0.003867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.562710 B = 6663.308011 C = 7239.791628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.010 3.990 3 Si 0.899 3.101 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.289 1.289 7 C -0.258 4.258 8 H 0.060 0.940 9 N -0.590 5.590 10 C 0.177 3.823 11 C -0.134 4.134 12 C -0.075 4.075 13 C 0.056 3.944 14 N -0.519 5.519 15 C 0.339 3.661 16 O -0.465 6.465 17 C 0.039 3.961 18 H 0.110 0.890 19 C -0.152 4.152 20 C -0.154 4.154 21 C 0.047 3.953 22 O -0.372 6.372 23 C -0.127 4.127 24 C 0.147 3.853 25 H 0.253 0.747 26 H 0.074 0.926 27 H 0.020 0.980 28 H 0.053 0.947 29 H 0.050 0.950 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.048 0.952 33 H 0.399 0.601 34 H 0.097 0.903 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.045 0.955 41 H 0.051 0.949 42 H 0.051 0.949 43 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.130 -16.333 -6.207 20.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.190 4.190 3 Si 0.729 3.271 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.216 1.216 7 C -0.388 4.388 8 H 0.078 0.922 9 N -0.313 5.313 10 C 0.051 3.949 11 C -0.174 4.174 12 C -0.094 4.094 13 C -0.072 4.072 14 N -0.250 5.250 15 C 0.108 3.892 16 O -0.260 6.260 17 C -0.022 4.022 18 H 0.128 0.872 19 C -0.190 4.190 20 C -0.191 4.191 21 C -0.030 4.030 22 O -0.290 6.290 23 C -0.166 4.166 24 C 0.021 3.979 25 H 0.063 0.937 26 H 0.092 0.908 27 H 0.038 0.962 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.092 0.908 31 H 0.105 0.895 32 H 0.067 0.933 33 H 0.253 0.747 34 H 0.116 0.884 35 H 0.098 0.902 36 H 0.106 0.894 37 H 0.102 0.898 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.064 0.936 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 9.412 -16.260 -6.020 19.728 hybrid contribution 1.884 1.116 -0.239 2.203 sum 11.295 -15.144 -6.259 19.902 Atomic orbital electron populations 1.70042 1.05374 1.25442 1.53190 1.25240 0.95235 0.98536 0.99957 0.86285 0.79456 0.84062 0.77305 1.20214 1.21507 1.21624 1.19117 0.91612 0.84480 1.43623 0.92221 1.43958 1.42323 1.03723 1.41336 1.20645 0.90144 0.96108 0.88016 1.22219 1.00395 0.95603 0.99191 1.21102 0.99424 0.93348 0.95552 1.22477 1.01358 0.86705 0.96678 1.71254 1.22929 1.11070 1.19711 1.22583 0.90129 0.85520 0.90958 1.84668 1.36471 1.25045 1.79830 1.23552 0.93721 1.00535 0.84368 0.87229 1.23313 0.93421 1.03267 0.99047 1.23138 0.98434 1.03312 0.94265 1.23225 0.80637 1.01320 0.97815 1.88525 1.21738 1.84787 1.33987 1.22069 0.97256 0.98768 0.98491 1.20873 0.97654 0.86951 0.92421 0.93669 0.90801 0.96163 0.92801 0.93115 0.90817 0.89524 0.93347 0.74695 0.88406 0.90180 0.89446 0.89807 0.90948 0.90922 0.93589 0.93075 0.93090 0.96489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.41 11.67 55.49 0.65 -25.76 16 2 C 0.01 0.28 4.91 -17.43 -0.09 0.20 16 3 Si 0.90 21.67 29.58 -169.99 -5.03 16.65 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 7 C -0.26 -7.17 9.50 -15.06 -0.14 -7.31 16 8 H 0.06 1.63 7.87 -52.49 -0.41 1.22 16 9 N -0.59 -15.06 2.95 -172.32 -0.51 -15.56 16 10 C 0.18 4.27 5.26 -3.71 -0.02 4.25 16 11 C -0.13 -2.59 5.36 -26.61 -0.14 -2.73 16 12 C -0.08 -1.34 2.36 -90.58 -0.21 -1.56 16 13 C 0.06 0.88 5.45 -4.04 -0.02 0.86 16 14 N -0.52 -8.47 10.04 -58.56 -0.59 -9.06 16 15 C 0.34 4.58 7.21 -13.45 -0.10 4.48 16 16 O -0.46 -5.44 13.54 -16.47 -0.22 -5.66 16 17 C 0.04 0.44 3.06 -26.86 -0.08 0.35 16 18 H 0.11 1.40 4.67 -51.93 -0.24 1.16 16 19 C -0.15 -1.18 6.47 -24.48 -0.16 -1.33 16 20 C -0.15 -1.00 7.02 -24.79 -0.17 -1.17 16 21 C 0.05 0.36 7.79 37.88 0.30 0.66 16 22 O -0.37 -4.26 11.02 -35.23 -0.39 -4.65 16 23 C -0.13 -2.28 4.84 -26.61 -0.13 -2.41 16 24 C 0.15 3.22 6.52 -3.71 -0.02 3.19 16 25 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 26 H 0.07 1.97 6.60 -51.93 -0.34 1.63 16 27 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 29 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 31 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.05 0.72 5.26 -51.93 -0.27 0.45 16 33 H 0.40 2.52 6.87 45.56 0.31 2.84 16 34 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.08 0.44 6.22 -51.92 -0.32 0.11 16 36 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.05 0.77 7.46 -51.93 -0.39 0.38 16 41 H 0.05 0.90 7.56 -51.93 -0.39 0.51 16 42 H 0.05 1.08 7.93 -51.93 -0.41 0.67 16 43 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 334.18 15.07 5.04 5.04 Total: -1.00 -33.05 334.18 -8.31 -41.36 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -6.26 Total: 0.18 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: -1.00 Total: -2.52 kcal Atomic # 7 Polarization: -49.94 SS G_CDS: -0.45 Total: -50.38 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: -0.61 Total: -10.31 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.03 Total: 16.65 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.05 -8.31 -41.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000328749039.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.546 kcal (2) G-P(sol) polarization free energy of solvation -33.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds