Wall clock time and date at job start Tue Mar 31 2020 06:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 119.99901 * 2 1 4 4 H 1.48500 * 109.47158 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47319 * 299.99742 * 3 2 1 6 6 H 1.48500 * 109.47265 * 60.00057 * 3 2 1 7 7 C 1.38804 * 120.00063 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00596 * 194.95646 * 7 2 1 9 9 N 1.36945 * 120.00137 * 14.95942 * 7 2 1 10 10 C 1.46919 * 120.62755 * 35.76366 * 9 7 2 11 11 C 1.53196 * 108.77622 * 126.37352 * 10 9 7 12 12 C 1.53040 * 109.31059 * 54.63039 * 11 10 9 13 13 C 1.53005 * 109.45707 * 178.62780 * 12 11 10 14 14 N 1.46498 * 109.47009 * 185.02478 * 13 12 11 15 15 C 1.29036 * 120.00275 * 246.23047 * 14 13 12 16 16 O 1.34917 * 120.00031 * 186.81935 * 15 14 13 17 17 C 1.50699 * 119.99925 * 6.82461 * 15 14 13 18 18 H 1.09006 * 110.27547 * 16.70943 * 17 15 14 19 19 C 1.54946 * 110.31217 * 138.90342 * 17 15 14 20 20 C 1.55308 * 100.94248 * 155.35680 * 19 17 15 21 21 C 1.54375 * 102.25091 * 325.87154 * 20 19 17 22 22 O 1.43232 * 107.59186 * 21.35326 * 21 20 19 23 23 C 1.53033 * 109.54152 * 298.63541 * 12 11 10 24 24 C 1.46920 * 120.63091 * 215.74330 * 9 7 2 25 25 H 0.97007 * 119.99804 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.59030 * 6.58039 * 10 9 7 27 27 H 1.09004 * 109.58678 * 246.15495 * 10 9 7 28 28 H 1.09001 * 109.49306 * 294.67719 * 11 10 9 29 29 H 1.09004 * 109.49810 * 174.58090 * 11 10 9 30 30 H 1.08998 * 109.45788 * 58.66264 * 12 11 10 31 31 H 1.08999 * 109.46974 * 305.03134 * 13 12 11 32 32 H 1.08997 * 109.46886 * 65.02998 * 13 12 11 33 33 H 0.96698 * 114.00078 * 180.02562 * 16 15 14 34 34 H 1.09000 * 111.12853 * 273.28094 * 19 17 15 35 35 H 1.09010 * 111.12267 * 37.44214 * 19 17 15 36 36 H 1.08997 * 110.84666 * 207.67741 * 20 19 17 37 37 H 1.08999 * 111.01754 * 84.14072 * 20 19 17 38 38 H 1.08997 * 109.82916 * 261.83744 * 21 20 19 39 39 H 1.09004 * 109.82840 * 140.86911 * 21 20 19 40 40 H 1.08993 * 109.50366 * 181.31984 * 23 12 11 41 41 H 1.09002 * 109.49786 * 301.41856 * 23 12 11 42 42 H 1.09005 * 109.58530 * 353.41561 * 24 9 7 43 43 H 1.09001 * 109.58837 * 113.69618 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0628 -1.2179 0.2419 9 7 1.3603 -2.3681 -0.3051 10 6 0.2970 -2.3888 -1.3186 11 6 0.6272 -3.4649 -2.3579 12 6 0.8459 -4.8033 -1.6487 13 6 1.1423 -5.8876 -2.6866 14 7 1.2330 -7.1893 -2.0206 15 6 2.3589 -7.8186 -1.9846 16 8 2.4144 -9.0745 -1.4949 17 6 3.6119 -7.1507 -2.4895 18 1 3.4606 -6.0741 -2.5681 19 6 4.8034 -7.4612 -1.5489 20 6 6.0012 -7.2793 -2.5205 21 6 5.4153 -7.7762 -3.8595 22 8 3.9884 -7.6957 -3.7641 23 6 2.0280 -4.6843 -0.6841 24 6 1.7136 -3.6221 0.3740 25 1 -0.4850 0.8401 -0.0004 26 1 0.2378 -1.4158 -1.8062 27 1 -0.6563 -2.6203 -0.8434 28 1 1.5334 -3.1855 -2.8953 29 1 -0.2000 -3.5570 -3.0617 30 1 -0.0521 -5.0699 -1.0914 31 1 0.3411 -5.9123 -3.4252 32 1 2.0873 -5.6668 -3.1829 33 1 3.2997 -9.4632 -1.5084 34 1 4.8519 -6.7465 -0.7273 35 1 4.7526 -8.4839 -1.1750 36 1 6.8462 -7.8959 -2.2141 37 1 6.2929 -6.2314 -2.5897 38 1 5.7165 -8.8091 -4.0343 39 1 5.7677 -7.1441 -4.6746 40 1 2.1980 -5.6443 -0.1967 41 1 2.9211 -4.3935 -1.2373 42 1 2.5893 -3.4628 1.0033 43 1 0.8768 -3.9528 0.9893 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000328749039.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:35 Heat of formation + Delta-G solvation = -75.837660 kcal Electronic energy + Delta-G solvation = -23268.095729 eV Core-core repulsion = 19927.139952 eV Total energy + Delta-G solvation = -3340.955777 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.34444 -39.55957 -38.78241 -36.71925 -34.61991 -33.17932 -32.57813 -31.48111 -30.36275 -28.46654 -25.98856 -24.27206 -23.85381 -23.05116 -22.66768 -21.10269 -20.54922 -19.07569 -18.73552 -18.03886 -16.87470 -16.68464 -16.45257 -15.92041 -15.70923 -15.41921 -15.34732 -15.00046 -14.82426 -14.48069 -14.22392 -14.07513 -13.79518 -13.40893 -13.04338 -12.99206 -12.82554 -12.76009 -12.64356 -12.38990 -12.31039 -12.01880 -11.92447 -11.91371 -11.58336 -11.24546 -11.16882 -10.84265 -10.58631 -10.19312 -9.92991 -8.59730 -7.88544 -5.43527 1.08203 1.45406 1.46647 1.57838 2.39723 2.49608 2.73846 3.24654 3.26533 3.42344 3.68014 3.76097 3.89150 3.91297 4.06348 4.08808 4.12197 4.25538 4.41634 4.48179 4.56008 4.69135 4.69854 4.77194 4.81094 4.88745 4.90445 4.93338 4.96551 5.00910 5.13856 5.18871 5.25467 5.28445 5.35660 5.46466 5.65321 5.70406 5.83415 6.24022 6.41611 7.14792 7.16057 7.82506 8.40875 9.17268 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.023086 B = 0.004201 C = 0.003867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.562710 B = 6663.308011 C = 7239.791628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.043 4.043 3 Si 0.968 3.032 4 H -0.263 1.263 5 H -0.288 1.288 6 H -0.291 1.291 7 C -0.270 4.270 8 H 0.063 0.937 9 N -0.608 5.608 10 C 0.183 3.817 11 C -0.120 4.120 12 C -0.069 4.069 13 C 0.070 3.930 14 N -0.568 5.568 15 C 0.354 3.646 16 O -0.471 6.471 17 C 0.041 3.959 18 H 0.092 0.908 19 C -0.150 4.150 20 C -0.146 4.146 21 C 0.038 3.962 22 O -0.394 6.394 23 C -0.107 4.107 24 C 0.143 3.857 25 H 0.251 0.749 26 H 0.042 0.958 27 H -0.007 1.007 28 H 0.058 0.942 29 H 0.069 0.931 30 H 0.054 0.946 31 H 0.087 0.913 32 H 0.057 0.943 33 H 0.422 0.578 34 H 0.095 0.905 35 H 0.106 0.894 36 H 0.114 0.886 37 H 0.077 0.923 38 H 0.093 0.907 39 H 0.074 0.926 40 H 0.062 0.938 41 H 0.059 0.941 42 H 0.054 0.946 43 H 0.002 0.998 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.708 -17.860 -6.735 23.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.239 4.239 3 Si 0.795 3.205 4 H -0.188 1.188 5 H -0.215 1.215 6 H -0.218 1.218 7 C -0.400 4.400 8 H 0.081 0.919 9 N -0.331 5.331 10 C 0.057 3.943 11 C -0.160 4.160 12 C -0.088 4.088 13 C -0.058 4.058 14 N -0.301 5.301 15 C 0.124 3.876 16 O -0.270 6.270 17 C -0.020 4.020 18 H 0.110 0.890 19 C -0.188 4.188 20 C -0.184 4.184 21 C -0.037 4.037 22 O -0.313 6.313 23 C -0.146 4.146 24 C 0.018 3.982 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.011 0.989 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.073 0.927 31 H 0.106 0.894 32 H 0.075 0.925 33 H 0.280 0.720 34 H 0.114 0.886 35 H 0.125 0.875 36 H 0.132 0.868 37 H 0.096 0.904 38 H 0.111 0.889 39 H 0.092 0.908 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.073 0.927 43 H 0.020 0.980 Dipole moment (debyes) X Y Z Total from point charges 12.041 -17.837 -6.548 22.495 hybrid contribution 1.126 1.467 -0.043 1.850 sum 13.167 -16.370 -6.592 22.018 Atomic orbital electron populations 1.70197 1.06985 1.25990 1.54662 1.26036 0.95993 1.01881 1.00036 0.85215 0.78792 0.79598 0.76860 1.18752 1.21493 1.21788 1.19464 0.91981 0.85569 1.43010 0.91925 1.44226 1.42292 1.04419 1.42209 1.20462 0.88969 0.96186 0.88645 1.22009 1.01248 0.94728 0.97996 1.20966 0.98534 0.93343 0.95927 1.22209 1.01841 0.86133 0.95641 1.71212 1.24847 1.11688 1.22309 1.22857 0.90335 0.85535 0.88901 1.84641 1.38842 1.24320 1.79152 1.23408 0.94022 0.99081 0.85505 0.89044 1.23382 0.92135 1.04787 0.98474 1.23135 0.98649 1.03557 0.93044 1.23466 0.78879 1.02758 0.98635 1.88504 1.24049 1.84724 1.33994 1.21842 0.97503 0.97920 0.97357 1.21004 0.97119 0.86656 0.93452 0.94030 0.93898 0.98926 0.92350 0.91193 0.92738 0.89443 0.92467 0.72040 0.88624 0.87549 0.86801 0.90376 0.88932 0.90808 0.91955 0.92249 0.92730 0.97960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.59 11.67 21.65 0.25 -56.33 16 2 C -0.04 -2.44 4.91 84.86 0.42 -2.03 16 3 Si 0.97 44.98 29.58 68.60 2.03 47.01 16 4 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 5 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 6 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 7 C -0.27 -15.12 9.50 84.03 0.80 -14.33 16 8 H 0.06 3.41 7.87 -2.91 -0.02 3.39 16 9 N -0.61 -31.59 2.95 -699.10 -2.06 -33.65 16 10 C 0.18 9.16 5.26 86.37 0.45 9.61 16 11 C -0.12 -4.64 5.36 30.67 0.16 -4.47 16 12 C -0.07 -2.43 2.36 -10.77 -0.03 -2.46 16 13 C 0.07 2.14 5.45 86.38 0.47 2.61 16 14 N -0.57 -17.89 10.04 -454.05 -4.56 -22.44 16 15 C 0.35 8.84 7.21 88.52 0.64 9.48 16 16 O -0.47 -9.79 13.54 -81.86 -1.11 -10.90 16 17 C 0.04 0.82 3.06 30.51 0.09 0.91 16 18 H 0.09 2.18 4.67 -2.38 -0.01 2.16 16 19 C -0.15 -1.81 6.47 32.05 0.21 -1.60 16 20 C -0.15 -1.39 7.02 31.85 0.22 -1.17 16 21 C 0.04 0.48 7.79 72.45 0.56 1.04 16 22 O -0.39 -8.10 11.02 -148.98 -1.64 -9.74 16 23 C -0.11 -3.77 4.84 30.67 0.15 -3.62 16 24 C 0.14 6.29 6.52 86.36 0.56 6.85 16 25 H 0.25 14.61 8.31 -92.70 -0.77 13.84 16 26 H 0.04 2.38 6.60 -2.39 -0.02 2.36 16 27 H -0.01 -0.40 8.14 -2.38 -0.02 -0.42 16 28 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 29 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 30 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 32 H 0.06 1.63 5.26 -2.39 -0.01 1.62 16 33 H 0.42 3.83 6.87 -74.06 -0.51 3.33 16 34 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.11 0.69 6.22 -2.38 -0.01 0.68 16 36 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 40 H 0.06 1.99 7.46 -2.39 -0.02 1.98 16 41 H 0.06 2.00 7.56 -2.39 -0.02 1.99 16 42 H 0.05 2.31 7.93 -2.38 -0.02 2.29 16 43 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 Total: -1.00 -72.79 334.18 -1.87 -74.66 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: 0.50 Total: 10.57 kcal Atomic # 6 Polarization: -3.88 SS G_CDS: 4.72 Total: 0.84 kcal Atomic # 7 Polarization: -106.07 SS G_CDS: -6.36 Total: -112.43 kcal Atomic # 8 Polarization: -17.89 SS G_CDS: -2.75 Total: -20.64 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -72.79 -1.87 -74.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000328749039.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.178 kcal (2) G-P(sol) polarization free energy of solvation -72.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds