Wall clock time and date at job start Tue Mar 31 2020 06:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00020 * 2 1 4 4 H 1.48499 * 109.46908 * 85.01523 * 3 2 1 5 5 H 1.48494 * 109.47234 * 205.01898 * 3 2 1 6 6 H 1.48508 * 109.47269 * 325.01996 * 3 2 1 7 7 C 1.38810 * 120.00107 * 180.28779 * 2 1 3 8 8 H 1.08001 * 120.00488 * 155.36852 * 7 2 1 9 9 N 1.36936 * 119.99891 * 335.35991 * 7 2 1 10 10 C 1.46933 * 120.63045 * 331.19973 * 9 7 2 11 11 C 1.52762 * 109.00426 * 233.58052 * 10 9 7 12 12 C 1.53037 * 109.38390 * 305.58449 * 11 10 9 13 13 C 1.53042 * 109.53922 * 61.24549 * 12 11 10 14 14 H 1.09006 * 109.52226 * 58.59581 * 13 12 11 15 15 C 1.52996 * 109.50130 * 178.68231 * 13 12 11 16 16 N 1.46495 * 109.47239 * 184.83419 * 15 13 12 17 17 C 1.29039 * 119.99859 * 117.12767 * 16 15 13 18 18 O 1.34924 * 120.00201 * 174.50237 * 17 16 15 19 19 C 1.50702 * 120.00022 * 354.49566 * 17 16 15 20 20 H 1.08996 * 109.86972 * 320.72646 * 19 17 16 21 21 C 1.54099 * 109.87963 * 81.73445 * 19 17 16 22 22 C 1.54808 * 104.18868 * 121.45452 * 21 19 17 23 23 C 1.54996 * 102.09329 * 20.88086 * 22 21 19 24 24 O 1.43748 * 109.88010 * 199.72210 * 19 17 16 25 25 C 1.46917 * 120.63334 * 151.47180 * 9 7 2 26 26 H 0.96996 * 119.99884 * 359.97438 * 1 2 3 27 27 H 1.09005 * 109.58392 * 353.40957 * 10 9 7 28 28 H 1.08992 * 109.58838 * 113.84109 * 10 9 7 29 29 H 1.08998 * 109.56251 * 185.54907 * 11 10 9 30 30 H 1.09000 * 109.38407 * 65.51511 * 11 10 9 31 31 H 1.08998 * 109.45932 * 301.22143 * 12 11 10 32 32 H 1.09003 * 109.46051 * 181.26301 * 12 11 10 33 33 H 1.08999 * 109.46944 * 304.83751 * 15 13 12 34 34 H 1.09009 * 109.46846 * 64.83400 * 15 13 12 35 35 H 0.96701 * 113.99885 * 179.97438 * 18 17 16 36 36 H 1.09003 * 110.48565 * 240.13375 * 21 19 17 37 37 H 1.09001 * 110.48323 * 2.77604 * 21 19 17 38 38 H 1.08998 * 110.90322 * 139.07997 * 22 21 19 39 39 H 1.09000 * 110.90556 * 262.64812 * 22 21 19 40 40 H 1.08998 * 110.61805 * 81.47570 * 23 22 21 41 41 H 1.08993 * 110.61522 * 204.31739 * 23 22 21 42 42 H 1.08999 * 109.59465 * 246.16225 * 25 9 7 43 43 H 1.09010 * 109.58534 * 6.58822 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3924 2.1072 1.3948 5 1 3.5964 1.4121 -0.5921 6 1 1.5043 2.6201 -0.8027 7 6 2.0103 -1.2021 -0.0060 8 1 3.0166 -1.2428 -0.3960 9 7 1.4192 -2.3365 0.4827 10 6 0.4001 -2.2544 1.5380 11 6 0.8076 -3.1650 2.6949 12 6 1.0523 -4.5799 2.1657 13 6 2.1919 -4.5545 1.1445 14 1 3.0932 -4.1603 1.6141 15 6 2.4578 -5.9743 0.6404 16 7 3.6223 -5.9669 -0.2485 17 6 4.6816 -6.6311 0.0704 18 8 5.7115 -6.7157 -0.7971 19 6 4.7685 -7.3123 1.4119 20 1 4.3237 -6.6783 2.1788 21 6 4.0344 -8.6662 1.3607 22 6 5.1218 -9.7019 1.7366 23 6 6.1659 -8.8240 2.4725 24 8 6.1431 -7.5801 1.7360 25 6 1.7961 -3.6592 -0.0339 26 1 -0.4850 0.8400 0.0004 27 1 0.3238 -1.2267 1.8931 28 1 -0.5623 -2.5791 1.1426 29 1 0.0117 -3.1876 3.4394 30 1 1.7214 -2.7838 3.1507 31 1 0.1453 -4.9511 1.6886 32 1 1.3214 -5.2358 2.9937 33 1 2.6524 -6.6305 1.4887 34 1 1.5861 -6.3352 0.0943 35 1 6.4600 -7.2332 -0.4697 36 1 3.2208 -8.6867 2.0859 37 1 3.6563 -8.8573 0.3563 38 1 4.7181 -10.4657 2.4013 39 1 5.5532 -10.1544 0.8438 40 1 5.8680 -8.6601 3.5080 41 1 7.1536 -9.2826 2.4264 42 1 0.9498 -4.1008 -0.5602 43 1 2.6406 -3.5581 -0.7158 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000328852982.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:26 Heat of formation + Delta-G solvation = -52.942911 kcal Electronic energy + Delta-G solvation = -23009.011324 eV Core-core repulsion = 19669.048338 eV Total energy + Delta-G solvation = -3339.962987 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.48403 -38.09917 -37.58388 -35.30572 -33.03790 -32.47610 -30.63899 -30.29189 -29.28402 -25.66276 -25.13517 -23.63751 -22.19407 -21.93249 -21.29088 -19.75720 -18.97520 -18.31783 -17.08225 -16.50869 -16.23809 -15.12120 -14.88599 -14.70415 -14.50074 -14.18878 -14.13008 -13.74760 -13.42694 -13.27681 -12.76575 -12.38625 -12.28639 -12.21968 -12.09471 -11.96035 -11.71161 -11.35724 -11.24084 -10.99262 -10.67625 -10.49604 -10.38460 -10.13890 -10.12592 -9.81362 -9.61610 -9.37382 -8.95448 -8.79155 -8.32732 -6.56101 -5.70598 -3.07298 2.26065 3.29360 3.45582 3.48297 3.52894 3.55744 3.93860 4.15891 4.39576 4.46431 4.60459 4.76578 4.87745 5.15876 5.19812 5.24627 5.31700 5.33005 5.44459 5.47343 5.55005 5.57247 5.66849 5.76825 5.83048 6.01985 6.15066 6.22661 6.31986 6.42618 6.49275 6.69456 6.74420 6.89596 7.12633 7.16760 7.24096 7.41278 7.64229 7.94863 8.22705 8.55843 9.31711 9.97223 10.55636 11.38263 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.025351 B = 0.003916 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.238858 B = 7148.239375 C = 7652.190113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.005 3.995 3 Si 0.893 3.107 4 H -0.289 1.289 5 H -0.278 1.278 6 H -0.292 1.292 7 C -0.253 4.253 8 H 0.065 0.935 9 N -0.592 5.592 10 C 0.171 3.829 11 C -0.141 4.141 12 C -0.102 4.102 13 C -0.099 4.099 14 H 0.064 0.936 15 C 0.063 3.937 16 N -0.524 5.524 17 C 0.341 3.659 18 O -0.463 6.463 19 C 0.043 3.957 20 H 0.098 0.902 21 C -0.146 4.146 22 C -0.155 4.155 23 C 0.046 3.954 24 O -0.374 6.374 25 C 0.162 3.838 26 H 0.252 0.748 27 H 0.074 0.926 28 H 0.018 0.982 29 H 0.049 0.951 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.041 0.959 33 H 0.038 0.962 34 H 0.087 0.913 35 H 0.406 0.594 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.066 0.934 41 H 0.099 0.901 42 H 0.015 0.985 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.896 -21.537 7.069 24.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.194 4.194 3 Si 0.723 3.277 4 H -0.216 1.216 5 H -0.203 1.203 6 H -0.219 1.219 7 C -0.382 4.382 8 H 0.082 0.918 9 N -0.314 5.314 10 C 0.045 3.955 11 C -0.180 4.180 12 C -0.140 4.140 13 C -0.120 4.120 14 H 0.082 0.918 15 C -0.066 4.066 16 N -0.254 5.254 17 C 0.110 3.890 18 O -0.258 6.258 19 C -0.019 4.019 20 H 0.116 0.884 21 C -0.185 4.185 22 C -0.192 4.192 23 C -0.030 4.030 24 O -0.292 6.292 25 C 0.035 3.965 26 H 0.062 0.938 27 H 0.092 0.908 28 H 0.036 0.964 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.105 0.895 35 H 0.260 0.740 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.099 0.901 40 H 0.084 0.916 41 H 0.117 0.883 42 H 0.033 0.967 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 8.287 -20.365 5.943 22.776 hybrid contribution 0.684 0.023 1.236 1.412 sum 8.970 -20.343 7.179 23.363 Atomic orbital electron populations 1.70153 1.05357 1.25409 1.53039 1.24961 0.95010 0.98437 1.00990 0.86400 0.79614 0.84128 0.77525 1.21586 1.20285 1.21903 1.19177 0.95724 0.86097 1.37235 0.91759 1.44083 1.46151 1.00996 1.40190 1.20587 0.90370 0.98135 0.86363 1.22079 1.00413 0.95868 0.99639 1.21418 0.97982 0.97511 0.97092 1.21709 0.98466 0.93205 0.98574 0.91757 1.22300 0.92002 0.98351 0.93944 1.71397 1.00546 1.18585 1.34865 1.22786 0.88849 0.91003 0.86393 1.84622 1.27263 1.72187 1.41729 1.23199 0.84112 0.97678 0.96896 0.88407 1.23000 0.98915 0.92569 1.04024 1.23169 0.96202 0.98317 1.01554 1.23672 1.00470 0.83321 0.95587 1.88864 1.24137 1.41433 1.74790 1.20814 0.97623 0.85710 0.92316 0.93833 0.90771 0.96426 0.93262 0.92829 0.92530 0.93991 0.94359 0.89510 0.74019 0.89559 0.89688 0.89615 0.90078 0.91582 0.88326 0.96706 0.91941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.14 11.78 55.49 0.65 -26.49 16 2 C 0.01 0.15 4.69 -17.43 -0.08 0.07 16 3 Si 0.89 22.63 29.62 -169.99 -5.03 17.60 16 4 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 5 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 6 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 7 C -0.25 -7.40 9.51 -15.06 -0.14 -7.55 16 8 H 0.06 1.90 7.94 -52.49 -0.42 1.48 16 9 N -0.59 -15.80 2.99 -172.58 -0.52 -16.31 16 10 C 0.17 4.25 5.34 -3.93 -0.02 4.22 16 11 C -0.14 -2.76 6.06 -26.83 -0.16 -2.92 16 12 C -0.10 -1.73 5.17 -26.69 -0.14 -1.87 16 13 C -0.10 -1.83 2.55 -90.50 -0.23 -2.06 16 14 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 15 C 0.06 0.95 5.33 -4.05 -0.02 0.93 16 16 N -0.52 -8.81 10.13 -58.56 -0.59 -9.40 16 17 C 0.34 4.72 7.18 -13.45 -0.10 4.62 16 18 O -0.46 -6.12 13.60 -33.08 -0.45 -6.57 16 19 C 0.04 0.45 2.88 -27.31 -0.08 0.37 16 20 H 0.10 1.11 6.85 -51.93 -0.36 0.75 16 21 C -0.15 -1.12 5.70 -25.20 -0.14 -1.27 16 22 C -0.15 -0.84 7.16 -24.72 -0.18 -1.02 16 23 C 0.05 0.28 7.72 38.21 0.29 0.58 16 24 O -0.37 -3.61 9.95 -51.82 -0.52 -4.13 16 25 C 0.16 3.74 5.62 -3.71 -0.02 3.72 16 26 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 27 H 0.07 2.03 6.37 -51.93 -0.33 1.70 16 28 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.04 0.47 4.71 -51.93 -0.24 0.23 16 34 H 0.09 1.29 8.14 -51.92 -0.42 0.86 16 35 H 0.41 3.48 7.67 45.56 0.35 3.83 16 36 H 0.09 0.59 7.91 -51.93 -0.41 0.17 16 37 H 0.08 0.71 7.69 -51.93 -0.40 0.31 16 38 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.06 1.54 7.71 -51.92 -0.40 1.14 16 LS Contribution 337.17 15.07 5.08 5.08 Total: -1.00 -34.04 337.17 -8.81 -42.85 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -6.42 Total: -0.45 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: -1.02 Total: -2.17 kcal Atomic # 7 Polarization: -51.75 SS G_CDS: -0.46 Total: -52.21 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: -0.97 Total: -10.70 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.03 Total: 17.60 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.04 -8.81 -42.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000328852982.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.090 kcal (2) G-P(sol) polarization free energy of solvation -34.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds