Wall clock time and date at job start Tue Mar 31 2020 06:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 120.00312 * 2 1 4 4 H 1.48503 * 109.47050 * 270.00257 * 3 2 1 5 5 H 1.48500 * 109.47159 * 30.00660 * 3 2 1 6 6 H 1.48507 * 109.47200 * 150.00383 * 3 2 1 7 7 C 1.38816 * 119.99533 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99821 * 193.82499 * 7 2 1 9 9 N 1.36929 * 120.00255 * 13.83065 * 7 2 1 10 10 C 1.46932 * 120.63079 * 35.18980 * 9 7 2 11 11 C 1.53194 * 108.77162 * 126.41353 * 10 9 7 12 12 C 1.53036 * 109.31458 * 54.64151 * 11 10 9 13 13 C 1.53047 * 109.53572 * 298.63238 * 12 11 10 14 14 H 1.09004 * 109.49412 * 301.37641 * 13 12 11 15 15 C 1.53000 * 109.49810 * 181.31633 * 13 12 11 16 16 N 1.46499 * 109.47259 * 174.99608 * 15 13 12 17 17 C 1.29035 * 120.00207 * 246.54925 * 16 15 13 18 18 O 1.34922 * 119.99847 * 187.81464 * 17 16 15 19 19 C 1.50697 * 120.00081 * 7.80494 * 17 16 15 20 20 H 1.08999 * 109.87061 * 13.49020 * 19 17 16 21 21 C 1.54096 * 109.87766 * 134.50139 * 19 17 16 22 22 C 1.54807 * 104.19315 * 121.45678 * 21 19 17 23 23 C 1.54999 * 102.08960 * 20.87580 * 22 21 19 24 24 O 1.43751 * 109.88089 * 252.33078 * 19 17 16 25 25 C 1.46929 * 120.63298 * 215.21449 * 9 7 2 26 26 H 0.97006 * 119.99057 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.58334 * 6.63538 * 10 9 7 28 28 H 1.08997 * 109.70965 * 246.26983 * 10 9 7 29 29 H 1.09000 * 109.50220 * 294.68063 * 11 10 9 30 30 H 1.09001 * 109.52187 * 174.60441 * 11 10 9 31 31 H 1.09002 * 109.46562 * 178.61219 * 12 11 10 32 32 H 1.09004 * 109.45188 * 58.64299 * 12 11 10 33 33 H 1.09007 * 109.47235 * 55.00025 * 15 13 12 34 34 H 1.08999 * 109.47090 * 295.00106 * 15 13 12 35 35 H 0.96706 * 114.00148 * 179.97438 * 18 17 16 36 36 H 1.09008 * 110.48744 * 240.13011 * 21 19 17 37 37 H 1.08996 * 110.48959 * 2.64600 * 21 19 17 38 38 H 1.08996 * 110.91343 * 139.07575 * 22 21 19 39 39 H 1.09004 * 110.90496 * 262.65392 * 22 21 19 40 40 H 1.08999 * 110.61670 * 81.48179 * 23 22 21 41 41 H 1.09002 * 110.61770 * 204.32200 * 23 22 21 42 42 H 1.09006 * 109.58467 * 113.80090 * 25 9 7 43 43 H 1.08996 * 109.58511 * 353.37427 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4478 2.6526 0.7002 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0667 -1.2159 0.2230 9 7 1.3553 -2.3707 -0.2845 10 6 0.2662 -2.3980 -1.2705 11 6 0.5717 -3.4784 -2.3127 12 6 0.8105 -4.8131 -1.6031 13 6 2.0168 -4.6878 -0.6695 14 1 2.8951 -4.3989 -1.2468 15 6 2.2748 -6.0317 0.0147 16 7 3.4986 -5.9450 0.8154 17 6 4.5365 -6.6365 0.4843 18 8 5.6072 -6.6807 1.3042 19 6 4.5527 -7.3948 -0.8178 20 1 3.7293 -7.0629 -1.4502 21 6 5.8941 -7.1656 -1.5409 22 6 6.4834 -8.5874 -1.7073 23 6 5.2228 -9.4792 -1.5722 24 8 4.4399 -8.8052 -0.5637 25 6 1.7278 -3.6211 0.3913 26 1 -0.4849 0.8402 0.0004 27 1 0.1932 -1.4274 -1.7611 28 1 -0.6755 -2.6272 -0.7718 29 1 1.4634 -3.2003 -2.8745 30 1 -0.2726 -3.5753 -2.9952 31 1 1.0038 -5.5889 -2.3440 32 1 -0.0726 -5.0782 -1.0217 33 1 2.3896 -6.8083 -0.7415 34 1 1.4333 -6.2770 0.6626 35 1 6.3350 -7.2239 0.9717 36 1 5.7286 -6.7049 -2.5149 37 1 6.5538 -6.5457 -0.9338 38 1 6.9406 -8.7066 -2.6895 39 1 7.2014 -8.8058 -0.9168 40 1 4.6791 -9.5207 -2.5160 41 1 5.4955 -10.4819 -1.2432 42 1 0.9064 -3.9514 1.0273 43 1 2.6189 -3.4574 0.9972 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000328852983.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:29 Heat of formation + Delta-G solvation = -48.968995 kcal Electronic energy + Delta-G solvation = -23029.328972 eV Core-core repulsion = 19689.538307 eV Total energy + Delta-G solvation = -3339.790665 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.50104 -38.08783 -37.62183 -35.21731 -32.95924 -32.54953 -30.58540 -30.26529 -29.34452 -25.59937 -25.13465 -23.64648 -22.11949 -21.85672 -21.41719 -19.72860 -18.97071 -18.38674 -17.11460 -16.49892 -16.11620 -15.25132 -14.92124 -14.73963 -14.34995 -14.23145 -14.10776 -13.71459 -13.37945 -13.22447 -12.74987 -12.53681 -12.24288 -12.21186 -12.05429 -11.82964 -11.68098 -11.37113 -11.18911 -10.92669 -10.72850 -10.41590 -10.36043 -10.13279 -10.11440 -9.84230 -9.61428 -9.37471 -8.97808 -8.74914 -8.37820 -6.44525 -5.69425 -3.18499 2.15765 3.39284 3.42962 3.49263 3.51670 3.54701 3.98890 4.12045 4.38671 4.49532 4.57086 4.77469 4.80866 5.20188 5.23649 5.28928 5.33099 5.35251 5.42037 5.46941 5.53738 5.58041 5.71587 5.79843 5.88312 6.03083 6.17286 6.33770 6.35827 6.45086 6.50957 6.71405 6.76505 6.91614 7.13803 7.17086 7.19211 7.44420 7.70364 7.91434 8.19585 8.60861 9.33632 9.95012 10.56989 11.38880 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.023693 B = 0.003999 C = 0.003737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.514447 B = 6999.761554 C = 7490.701020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.008 3.992 3 Si 0.901 3.099 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.253 4.253 8 H 0.061 0.939 9 N -0.592 5.592 10 C 0.174 3.826 11 C -0.141 4.141 12 C -0.102 4.102 13 C -0.099 4.099 14 H 0.062 0.938 15 C 0.060 3.940 16 N -0.512 5.512 17 C 0.335 3.665 18 O -0.462 6.462 19 C 0.036 3.964 20 H 0.103 0.897 21 C -0.156 4.156 22 C -0.156 4.156 23 C 0.042 3.958 24 O -0.364 6.364 25 C 0.161 3.839 26 H 0.253 0.747 27 H 0.074 0.926 28 H 0.019 0.981 29 H 0.052 0.948 30 H 0.048 0.952 31 H 0.041 0.959 32 H 0.057 0.943 33 H 0.045 0.955 34 H 0.089 0.911 35 H 0.399 0.601 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.064 0.936 41 H 0.097 0.903 42 H 0.016 0.984 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.035 -19.356 -6.392 23.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.192 4.192 3 Si 0.731 3.269 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.383 4.383 8 H 0.079 0.921 9 N -0.314 5.314 10 C 0.048 3.952 11 C -0.181 4.181 12 C -0.141 4.141 13 C -0.120 4.120 14 H 0.081 0.919 15 C -0.069 4.069 16 N -0.242 5.242 17 C 0.104 3.896 18 O -0.257 6.257 19 C -0.025 4.025 20 H 0.121 0.879 21 C -0.194 4.194 22 C -0.194 4.194 23 C -0.034 4.034 24 O -0.282 6.282 25 C 0.035 3.965 26 H 0.063 0.937 27 H 0.092 0.908 28 H 0.037 0.963 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.075 0.925 33 H 0.063 0.937 34 H 0.107 0.893 35 H 0.252 0.748 36 H 0.107 0.893 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.099 0.901 40 H 0.082 0.918 41 H 0.115 0.885 42 H 0.034 0.966 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 10.165 -18.338 -5.194 21.600 hybrid contribution 0.923 0.128 -1.273 1.577 sum 11.088 -18.210 -6.467 22.279 Atomic orbital electron populations 1.70028 1.05318 1.25369 1.53810 1.25223 0.95280 0.98440 1.00219 0.86320 0.79263 0.83758 0.77606 1.21490 1.21725 1.20330 1.19135 0.91417 0.84337 1.43407 0.92146 1.44006 1.40033 1.03954 1.43436 1.20664 0.89835 0.96257 0.88455 1.22171 1.00090 0.96615 0.99174 1.21421 0.97688 0.97432 0.97517 1.21746 0.98071 0.94116 0.98057 0.91939 1.22415 0.90800 0.98019 0.95657 1.71301 0.99575 1.20568 1.32733 1.22614 0.88240 0.91251 0.87498 1.84688 1.25944 1.69726 1.45315 1.23277 0.99884 0.83212 0.96164 0.87905 1.23040 0.95613 0.98274 1.02488 1.23199 0.98451 0.94122 1.03590 1.23649 0.90443 0.97006 0.92328 1.89004 1.71429 1.15871 1.51906 1.20839 0.98085 0.85893 0.91714 0.93745 0.90791 0.96334 0.92955 0.93353 0.94007 0.92474 0.93745 0.89258 0.74829 0.89303 0.89618 0.89577 0.90083 0.91759 0.88463 0.96637 0.92041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.17 11.55 55.49 0.64 -26.53 16 2 C 0.01 0.22 4.94 -17.43 -0.09 0.13 16 3 Si 0.90 22.46 29.58 -169.99 -5.03 17.43 16 4 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.25 -7.34 9.51 -15.06 -0.14 -7.48 16 8 H 0.06 1.75 7.87 -52.48 -0.41 1.34 16 9 N -0.59 -15.75 2.95 -172.32 -0.51 -16.26 16 10 C 0.17 4.31 5.25 -3.71 -0.02 4.29 16 11 C -0.14 -2.77 6.08 -26.61 -0.16 -2.93 16 12 C -0.10 -1.78 5.17 -26.69 -0.14 -1.91 16 13 C -0.10 -1.85 2.54 -90.50 -0.23 -2.08 16 14 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 15 C 0.06 0.96 5.40 -4.04 -0.02 0.94 16 16 N -0.51 -8.91 10.14 -58.56 -0.59 -9.50 16 17 C 0.34 4.71 7.28 -13.45 -0.10 4.61 16 18 O -0.46 -5.80 13.33 -16.49 -0.22 -6.02 16 19 C 0.04 0.39 3.10 -27.31 -0.08 0.30 16 20 H 0.10 1.19 5.57 -51.93 -0.29 0.90 16 21 C -0.16 -1.16 6.14 -25.21 -0.15 -1.31 16 22 C -0.16 -0.82 7.15 -24.72 -0.18 -0.99 16 23 C 0.04 0.29 7.72 38.21 0.29 0.58 16 24 O -0.36 -3.92 11.17 -35.23 -0.39 -4.32 16 25 C 0.16 3.74 5.62 -3.71 -0.02 3.72 16 26 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 27 H 0.07 2.03 6.52 -51.93 -0.34 1.69 16 28 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.04 0.62 5.25 -51.92 -0.27 0.35 16 34 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 35 H 0.40 2.78 7.60 45.56 0.35 3.12 16 36 H 0.09 0.63 8.14 -51.92 -0.42 0.21 16 37 H 0.09 0.60 6.77 -51.93 -0.35 0.24 16 38 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.06 1.51 7.72 -51.93 -0.40 1.11 16 LS Contribution 337.41 15.07 5.08 5.08 Total: -1.00 -34.37 337.41 -8.41 -42.78 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -6.35 Total: -0.52 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: -1.04 Total: -2.14 kcal Atomic # 7 Polarization: -51.83 SS G_CDS: -0.46 Total: -52.29 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: -0.61 Total: -10.34 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.03 Total: 17.43 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.37 -8.41 -42.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000328852983.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.193 kcal (2) G-P(sol) polarization free energy of solvation -34.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds