Wall clock time and date at job start Tue Mar 31 2020 05:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00475 * 2 1 4 4 H 1.48498 * 109.47427 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46836 * 300.00074 * 3 2 1 6 6 H 1.48500 * 109.46974 * 59.99590 * 3 2 1 7 7 C 1.37886 * 119.99807 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99712 * 173.34216 * 7 2 1 9 9 C 1.50701 * 119.99849 * 353.33858 * 7 2 1 10 10 C 1.52995 * 115.54896 * 85.34013 * 9 7 2 11 11 N 1.46494 * 109.47357 * 65.12235 * 10 9 7 12 12 C 1.37341 * 120.00306 * 180.77432 * 11 10 9 13 13 O 1.35089 * 119.99982 * 0.02562 * 12 11 10 14 14 N 1.30103 * 119.99897 * 180.02562 * 12 11 10 15 15 C 1.46506 * 119.99679 * 180.02562 * 14 12 11 16 16 C 1.52995 * 109.47006 * 114.99582 * 15 14 12 17 17 C 1.52999 * 109.46895 * 179.97438 * 16 15 14 18 18 O 1.42894 * 112.85359 * 53.80626 * 17 16 15 19 19 C 1.53783 * 113.61500 * 282.50059 * 17 16 15 20 20 C 1.53789 * 87.08121 * 220.02052 * 19 17 16 21 21 C 1.53779 * 87.07997 * 25.43111 * 20 19 17 22 22 C 1.53004 * 117.49724 * 231.01074 * 9 7 2 23 23 C 1.52999 * 117.49896 * 299.66707 * 9 7 2 24 24 H 0.97002 * 119.99576 * 5.04808 * 1 2 3 25 25 H 1.09004 * 109.47132 * 305.11870 * 10 9 7 26 26 H 1.09009 * 109.47054 * 185.12055 * 10 9 7 27 27 H 0.97006 * 119.99866 * 0.77533 * 11 10 9 28 28 H 0.96706 * 114.00104 * 359.97438 * 13 12 11 29 29 H 1.09004 * 109.46930 * 354.99529 * 15 14 12 30 30 H 1.08995 * 109.46758 * 234.99894 * 15 14 12 31 31 H 1.09004 * 109.47319 * 60.00185 * 16 15 14 32 32 H 1.08995 * 109.47616 * 299.99786 * 16 15 14 33 33 H 0.96703 * 113.99832 * 309.67016 * 18 17 16 34 34 H 1.09002 * 113.61589 * 334.56343 * 19 17 16 35 35 H 1.08993 * 113.61715 * 105.47438 * 19 17 16 36 36 H 1.09000 * 113.61279 * 270.88285 * 20 19 17 37 37 H 1.08999 * 113.61677 * 139.98274 * 20 19 17 38 38 H 1.09003 * 113.61133 * 220.02117 * 21 20 19 39 39 H 1.09001 * 113.61549 * 89.11729 * 21 20 19 40 40 H 1.09002 * 117.49523 * 215.00249 * 22 9 7 41 41 H 1.09001 * 117.49760 * 0.02562 * 22 9 7 42 42 H 1.09003 * 117.49831 * 359.97438 * 23 9 7 43 43 H 1.09003 * 117.49800 * 144.97417 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0790 -1.1973 -0.1079 9 6 1.2585 -2.4947 0.1525 10 6 0.6969 -3.0883 -1.1409 11 7 1.8021 -3.4624 -2.0268 12 6 1.5396 -4.0051 -3.2608 13 8 0.2622 -4.1936 -3.6579 14 7 2.5211 -4.3377 -4.0473 15 6 2.2411 -4.9161 -5.3639 16 6 2.7283 -3.9606 -6.4548 17 6 2.4364 -4.5649 -7.8297 18 8 1.0653 -4.9319 -7.9949 19 6 3.4252 -5.6690 -8.2399 20 6 3.3812 -5.0730 -9.6569 21 6 2.9976 -3.7374 -8.9982 22 6 1.7518 -3.4712 1.2222 23 6 0.4476 -2.6985 1.4338 24 1 -0.4849 0.8368 -0.0739 25 1 0.0679 -2.3490 -1.6369 26 1 0.1034 -3.9723 -0.9073 27 1 2.7194 -3.3267 -1.7418 28 1 -0.3971 -3.9168 -3.0068 29 1 1.1677 -5.0729 -5.4710 30 1 2.7588 -5.8705 -5.4590 31 1 3.8017 -3.8038 -6.3477 32 1 2.2106 -3.0062 -6.3598 33 1 0.7133 -5.4722 -7.2743 34 1 4.4000 -5.5825 -7.7600 35 1 3.0085 -6.6741 -8.1759 36 1 2.5940 -5.4930 -10.2830 37 1 4.3518 -5.0526 -10.1524 38 1 2.2356 -3.1832 -9.5463 39 1 3.8555 -3.1228 -8.7255 40 1 1.6762 -4.5366 1.0043 41 1 2.6156 -3.1727 1.8162 42 1 0.4539 -1.8919 2.1670 43 1 -0.4863 -3.2551 1.3552 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000328892068.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:44 Heat of formation + Delta-G solvation = -34.340711 kcal Electronic energy + Delta-G solvation = -22171.436047 eV Core-core repulsion = 18832.279712 eV Total energy + Delta-G solvation = -3339.156335 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.81231 -39.05949 -36.89549 -34.77442 -34.24241 -33.51274 -32.07516 -30.10715 -26.47359 -25.87643 -25.39063 -24.04717 -21.66189 -21.23994 -20.40523 -19.69512 -19.51300 -18.06407 -16.94155 -16.36047 -15.86050 -15.14612 -14.91632 -14.84689 -14.59622 -14.34524 -14.00400 -13.64072 -13.44554 -13.05925 -12.94158 -12.59527 -12.27148 -12.10744 -11.89721 -11.68885 -11.20446 -11.12312 -11.08803 -11.03031 -10.90539 -10.59367 -10.38782 -10.26555 -9.74728 -9.68641 -9.60657 -9.00293 -8.98046 -8.60926 -8.36095 -7.41362 -6.19486 -4.26741 3.15954 3.20677 3.30226 3.33925 3.58219 4.00671 4.28437 4.30664 4.47485 4.58262 4.74987 4.90260 5.09216 5.17563 5.27250 5.41759 5.58626 5.62524 5.67914 5.71646 5.78049 5.83538 5.89782 5.96602 6.08172 6.13748 6.16761 6.22243 6.32706 6.37456 6.43745 6.45463 6.60369 6.90678 6.94815 7.22436 7.36041 7.62244 7.73289 7.82777 8.21789 8.36359 8.75184 8.84880 9.41254 10.88519 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.021008 B = 0.003455 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.528967 B = 8102.733475 C = 8827.774583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.074 3.926 3 Si 0.891 3.109 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.497 4.497 8 H 0.063 0.937 9 C 0.033 3.967 10 C 0.150 3.850 11 N -0.708 5.708 12 C 0.570 3.430 13 O -0.522 6.522 14 N -0.633 5.633 15 C 0.078 3.922 16 C -0.130 4.130 17 C 0.109 3.891 18 O -0.546 6.546 19 C -0.164 4.164 20 C -0.136 4.136 21 C -0.128 4.128 22 C -0.207 4.207 23 C -0.148 4.148 24 H 0.262 0.738 25 H 0.070 0.930 26 H 0.033 0.967 27 H 0.420 0.580 28 H 0.398 0.602 29 H 0.042 0.958 30 H 0.061 0.939 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.378 0.622 34 H 0.088 0.912 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.065 0.935 38 H 0.073 0.927 39 H 0.092 0.908 40 H 0.066 0.934 41 H 0.080 0.920 42 H 0.085 0.915 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.034 -9.141 -10.644 14.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.130 4.130 3 Si 0.719 3.281 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.535 4.535 8 H 0.081 0.919 9 C 0.032 3.968 10 C 0.026 3.974 11 N -0.357 5.357 12 C 0.258 3.742 13 O -0.316 6.316 14 N -0.387 5.387 15 C -0.053 4.053 16 C -0.169 4.169 17 C 0.068 3.932 18 O -0.353 6.353 19 C -0.202 4.202 20 C -0.173 4.173 21 C -0.166 4.166 22 C -0.245 4.245 23 C -0.186 4.186 24 H 0.071 0.929 25 H 0.088 0.912 26 H 0.051 0.949 27 H 0.258 0.742 28 H 0.253 0.747 29 H 0.060 0.940 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.227 0.773 34 H 0.107 0.893 35 H 0.087 0.913 36 H 0.099 0.901 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.111 0.889 40 H 0.085 0.915 41 H 0.099 0.901 42 H 0.103 0.897 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.646 -8.906 -11.680 14.924 hybrid contribution -0.571 0.838 0.914 1.365 sum 2.075 -8.069 -10.765 13.612 Atomic orbital electron populations 1.69956 1.05911 1.26972 1.48636 1.24972 0.94842 0.99071 0.94102 0.86545 0.80371 0.83568 0.77638 1.19578 1.20999 1.20924 1.20405 0.93145 0.88426 1.51519 0.91929 1.18833 0.98749 0.94134 0.85080 1.21128 0.87859 0.96154 0.92247 1.44678 1.11703 1.66244 1.13030 1.21070 0.79862 0.86624 0.86642 1.85018 1.16334 1.82196 1.48052 1.72883 1.23107 1.35042 1.07683 1.21338 0.98495 0.96557 0.88884 1.22138 1.02544 0.99615 0.92567 1.22220 0.81676 0.95092 0.94251 1.86422 1.24764 1.74061 1.50062 1.23612 1.00444 0.99056 0.97087 1.22759 1.01358 0.96787 0.96440 1.23024 1.00563 0.96769 0.96198 1.23036 0.98660 0.95662 1.07109 1.22527 0.92315 1.01150 1.02592 0.92871 0.91166 0.94888 0.74160 0.74691 0.94009 0.92121 0.90461 0.91644 0.77255 0.89308 0.91257 0.90093 0.91607 0.90848 0.88913 0.91501 0.90147 0.89687 0.91675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.90 12.92 55.43 0.72 -22.19 16 2 C 0.07 1.88 5.39 -17.82 -0.10 1.78 16 3 Si 0.89 20.16 29.55 -169.99 -5.02 15.14 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.50 -12.28 8.66 -34.44 -0.30 -12.58 16 8 H 0.06 1.57 7.82 -52.49 -0.41 1.16 16 9 C 0.03 0.71 1.37 -155.66 -0.21 0.49 16 10 C 0.15 2.84 4.80 -4.05 -0.02 2.82 16 11 N -0.71 -12.90 5.57 -62.53 -0.35 -13.25 16 12 C 0.57 10.10 8.78 -88.56 -0.78 9.32 16 13 O -0.52 -8.22 11.99 -16.97 -0.20 -8.42 16 14 N -0.63 -11.34 10.61 -62.52 -0.66 -12.01 16 15 C 0.08 1.17 5.90 -4.04 -0.02 1.14 16 16 C -0.13 -1.81 5.18 -26.73 -0.14 -1.94 16 17 C 0.11 1.32 1.38 -89.81 -0.12 1.19 16 18 O -0.55 -7.05 13.39 -35.23 -0.47 -7.52 16 19 C -0.16 -1.70 7.32 -25.91 -0.19 -1.89 16 20 C -0.14 -1.33 8.02 -25.92 -0.21 -1.54 16 21 C -0.13 -1.40 7.47 -25.92 -0.19 -1.60 16 22 C -0.21 -4.02 9.96 -26.69 -0.27 -4.28 16 23 C -0.15 -3.08 9.43 -26.70 -0.25 -3.33 16 24 H 0.26 6.61 8.32 -40.82 -0.34 6.27 16 25 H 0.07 1.45 7.88 -51.93 -0.41 1.04 16 26 H 0.03 0.55 7.89 -51.92 -0.41 0.14 16 27 H 0.42 8.00 8.51 -40.82 -0.35 7.66 16 28 H 0.40 5.21 6.96 45.56 0.32 5.53 16 29 H 0.04 0.61 5.35 -51.93 -0.28 0.34 16 30 H 0.06 0.85 8.05 -51.93 -0.42 0.43 16 31 H 0.08 1.07 8.05 -51.93 -0.42 0.65 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.38 4.04 7.18 45.56 0.33 4.37 16 34 H 0.09 0.88 8.03 -51.93 -0.42 0.46 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.09 0.92 8.10 -51.93 -0.42 0.50 16 40 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 41 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 42 H 0.08 1.93 8.14 -51.93 -0.42 1.51 16 43 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 354.42 15.07 5.34 5.34 Total: -1.00 -27.30 354.42 -9.28 -36.57 By element: Atomic # 1 Polarization: 22.57 SS G_CDS: -5.82 Total: 16.75 kcal Atomic # 6 Polarization: -7.61 SS G_CDS: -2.80 Total: -10.41 kcal Atomic # 7 Polarization: -47.15 SS G_CDS: -0.30 Total: -47.45 kcal Atomic # 8 Polarization: -15.27 SS G_CDS: -0.68 Total: -15.94 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -27.30 -9.28 -36.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000328892068.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.231 kcal (2) G-P(sol) polarization free energy of solvation -27.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds