Wall clock time and date at job start Tue Mar 31 2020 06:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 120.00266 * 2 1 4 4 H 1.48501 * 109.46927 * 239.99444 * 3 2 1 5 5 H 1.48497 * 109.47094 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47015 * 119.99348 * 3 2 1 7 7 C 1.38812 * 119.99724 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00419 * 166.78679 * 7 2 1 9 9 N 1.36931 * 119.99878 * 346.50504 * 7 2 1 10 10 C 1.46928 * 120.63348 * 329.00963 * 9 7 2 11 11 C 1.52767 * 109.00737 * 233.58457 * 10 9 7 12 12 C 1.53042 * 109.38201 * 305.58632 * 11 10 9 13 13 C 1.53005 * 109.45605 * 181.26269 * 12 11 10 14 14 N 1.46500 * 109.47091 * 64.93127 * 13 12 11 15 15 C 1.29044 * 119.99537 * 115.90160 * 14 13 12 16 16 O 1.34919 * 119.99758 * 186.14017 * 15 14 13 17 17 C 1.50696 * 120.00502 * 6.14308 * 15 14 13 18 18 H 1.09005 * 109.82419 * 38.52273 * 17 15 14 19 19 C 1.54387 * 109.82933 * 277.63979 * 17 15 14 20 20 C 1.55448 * 102.18408 * 219.18114 * 19 17 15 21 21 C 1.54942 * 100.99139 * 34.03909 * 20 19 17 22 22 O 1.43229 * 109.83267 * 159.41118 * 17 15 14 23 23 C 1.53033 * 109.53807 * 61.24456 * 12 11 10 24 24 C 1.46934 * 120.63204 * 149.29292 * 9 7 2 25 25 H 0.97006 * 119.99962 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.58317 * 353.41570 * 10 9 7 27 27 H 1.08997 * 109.58437 * 113.84395 * 10 9 7 28 28 H 1.09003 * 109.56014 * 185.55523 * 11 10 9 29 29 H 1.08995 * 109.38529 * 65.51344 * 11 10 9 30 30 H 1.09001 * 109.46091 * 301.21580 * 12 11 10 31 31 H 1.08997 * 109.46654 * 184.92869 * 13 12 11 32 32 H 1.08997 * 109.46977 * 304.92920 * 13 12 11 33 33 H 0.96697 * 114.00238 * 180.02562 * 16 15 14 34 34 H 1.09001 * 110.84260 * 337.31766 * 19 17 15 35 35 H 1.09000 * 110.84678 * 100.93581 * 19 17 15 36 36 H 1.09004 * 111.05586 * 276.11828 * 20 19 17 37 37 H 1.09001 * 111.14485 * 151.99267 * 20 19 17 38 38 H 1.09006 * 110.30996 * 204.69202 * 21 20 19 39 39 H 1.08997 * 110.31311 * 82.52087 * 21 20 19 40 40 H 1.08998 * 109.49633 * 178.68536 * 23 12 11 41 41 H 1.09002 * 109.52813 * 58.59660 * 23 12 11 42 42 H 1.09000 * 109.58307 * 246.15821 * 24 9 7 43 43 H 1.09001 * 109.57964 * 6.57557 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1041 1.6962 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0687 -1.2148 -0.2132 9 7 1.3538 -2.3715 0.2778 10 6 0.2009 -2.3851 1.1885 11 6 0.4437 -3.4227 2.2831 12 6 0.7532 -4.7765 1.6400 13 6 0.9657 -5.8241 2.7347 14 7 -0.2849 -6.0204 3.4722 15 6 -0.8816 -7.1640 3.4375 16 8 -2.0934 -7.3103 4.0125 17 6 -0.2251 -8.3362 2.7549 18 1 0.8468 -8.3262 2.9526 19 6 -0.4778 -8.2651 1.2335 20 6 -0.7201 -9.7572 0.8711 21 6 -1.4307 -10.2608 2.1525 22 8 -0.7961 -9.5594 3.2336 23 6 2.0212 -4.6619 0.7909 24 6 1.7928 -3.6376 -0.3250 25 1 -0.4850 0.8401 -0.0004 26 1 0.0807 -1.4005 1.6405 27 1 -0.6999 -2.6473 0.6337 28 1 -0.4462 -3.5109 2.9063 29 1 1.2883 -3.1101 2.8970 30 1 -0.0818 -5.0772 1.0071 31 1 1.2716 -6.7668 2.2810 32 1 1.7415 -5.4818 3.4195 33 1 -2.4602 -8.2017 3.9357 34 1 -1.3608 -7.6646 1.0147 35 1 0.3968 -7.8750 0.7129 36 1 0.2233 -10.2801 0.7136 37 1 -1.3686 -9.8499 -0.0001 38 1 -1.2907 -11.3360 2.2651 39 1 -2.4928 -10.0186 2.1161 40 1 2.2540 -5.6321 0.3520 41 1 2.8516 -4.3376 1.4181 42 1 1.0244 -4.0039 -1.0057 43 1 2.7225 -3.4790 -0.8714 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000328895641.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:39 Heat of formation + Delta-G solvation = -53.317236 kcal Electronic energy + Delta-G solvation = -23045.196067 eV Core-core repulsion = 19705.216848 eV Total energy + Delta-G solvation = -3339.979218 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.58210 -38.10267 -37.58859 -35.38557 -33.03862 -32.48087 -30.71761 -29.71760 -29.46672 -26.85081 -24.19929 -23.44956 -22.20835 -22.00894 -21.46934 -19.69933 -18.98395 -18.18106 -17.50670 -16.66828 -16.19001 -15.38835 -14.80435 -14.64485 -14.40762 -14.01780 -13.86480 -13.62110 -13.41085 -13.29173 -12.99715 -12.58345 -12.38133 -12.24458 -12.05749 -11.81006 -11.58683 -11.37428 -11.26216 -10.87969 -10.66497 -10.63317 -10.51304 -10.13321 -10.10635 -9.85624 -9.50965 -9.37340 -8.93159 -8.78701 -8.38642 -6.53060 -5.70309 -3.16849 2.19909 3.28246 3.41872 3.42708 3.48111 3.49360 3.90299 4.09588 4.38466 4.55508 4.56696 4.69557 4.87615 5.14298 5.20189 5.27873 5.32969 5.36126 5.49028 5.50244 5.51683 5.62690 5.66503 5.76299 5.92506 6.01418 6.18116 6.29958 6.33898 6.45265 6.61552 6.77834 6.84223 6.97725 7.04764 7.08416 7.17935 7.53974 7.79855 7.87012 8.17560 8.56021 9.30753 9.93419 10.52188 11.37749 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.035059 B = 0.003575 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.454464 B = 7830.123084 C = 8149.963086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.004 3.996 3 Si 0.903 3.097 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.254 4.254 8 H 0.062 0.938 9 N -0.592 5.592 10 C 0.172 3.828 11 C -0.127 4.127 12 C -0.067 4.067 13 C 0.059 3.941 14 N -0.527 5.527 15 C 0.327 3.673 16 O -0.463 6.463 17 C 0.048 3.952 18 H 0.108 0.892 19 C -0.146 4.146 20 C -0.154 4.154 21 C 0.044 3.956 22 O -0.376 6.376 23 C -0.128 4.128 24 C 0.148 3.852 25 H 0.254 0.746 26 H 0.083 0.917 27 H 0.014 0.986 28 H 0.059 0.941 29 H 0.050 0.950 30 H 0.059 0.941 31 H 0.038 0.962 32 H 0.083 0.917 33 H 0.402 0.598 34 H 0.086 0.914 35 H 0.095 0.905 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.066 0.934 40 H 0.045 0.955 41 H 0.059 0.941 42 H 0.014 0.986 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.006 -22.042 3.143 22.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.195 4.195 3 Si 0.733 3.267 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.384 4.384 8 H 0.080 0.920 9 N -0.315 5.315 10 C 0.047 3.953 11 C -0.166 4.166 12 C -0.086 4.086 13 C -0.070 4.070 14 N -0.258 5.258 15 C 0.096 3.904 16 O -0.258 6.258 17 C -0.013 4.013 18 H 0.125 0.875 19 C -0.185 4.185 20 C -0.192 4.192 21 C -0.032 4.032 22 O -0.295 6.295 23 C -0.168 4.168 24 C 0.021 3.979 25 H 0.064 0.936 26 H 0.101 0.899 27 H 0.032 0.968 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.056 0.944 32 H 0.101 0.899 33 H 0.256 0.744 34 H 0.105 0.895 35 H 0.113 0.887 36 H 0.101 0.899 37 H 0.108 0.892 38 H 0.110 0.890 39 H 0.084 0.916 40 H 0.064 0.936 41 H 0.078 0.922 42 H 0.032 0.968 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.149 -20.523 3.851 20.992 hybrid contribution 0.604 -0.376 -0.671 0.978 sum -1.545 -20.899 3.180 21.196 Atomic orbital electron populations 1.70006 1.05263 1.25492 1.53937 1.25126 0.95324 0.98351 1.00658 0.86372 0.78867 0.83424 0.78067 1.20936 1.21638 1.21013 1.19117 0.91329 0.84452 1.43492 0.92034 1.44018 1.34968 1.02536 1.50025 1.20677 0.88325 0.97532 0.88803 1.22058 1.00712 0.94570 0.99310 1.21027 0.97949 0.95271 0.94363 1.22374 0.89940 0.98509 0.96132 1.71351 1.12619 1.20224 1.21593 1.23108 0.86368 0.90829 0.90093 1.84637 1.29326 1.37329 1.74513 1.23184 0.99358 0.83994 0.94784 0.87482 1.23233 1.04583 0.97628 0.93024 1.23308 1.02023 0.95139 0.98710 1.23548 0.96671 0.97487 0.85531 1.88448 1.73826 1.33284 1.33947 1.22070 0.97014 0.98716 0.98956 1.20853 0.97436 0.87138 0.92454 0.93632 0.89867 0.96809 0.92215 0.93147 0.92256 0.94375 0.89928 0.74406 0.89549 0.88672 0.89938 0.89213 0.89034 0.91579 0.93615 0.92216 0.96792 0.92940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.02 11.19 55.49 0.62 -26.40 16 2 C 0.00 0.12 4.98 -17.43 -0.09 0.03 16 3 Si 0.90 22.20 29.57 -169.99 -5.03 17.18 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.25 -7.18 9.57 -15.06 -0.14 -7.32 16 8 H 0.06 1.70 7.86 -52.49 -0.41 1.28 16 9 N -0.59 -15.39 2.99 -172.58 -0.52 -15.90 16 10 C 0.17 4.35 5.24 -3.93 -0.02 4.33 16 11 C -0.13 -2.67 5.25 -26.83 -0.14 -2.81 16 12 C -0.07 -1.18 2.36 -90.58 -0.21 -1.39 16 13 C 0.06 0.87 5.35 -4.04 -0.02 0.85 16 14 N -0.53 -8.54 10.00 -58.56 -0.59 -9.12 16 15 C 0.33 4.34 7.25 -13.45 -0.10 4.24 16 16 O -0.46 -5.84 13.60 -33.08 -0.45 -6.29 16 17 C 0.05 0.48 2.99 -27.16 -0.08 0.40 16 18 H 0.11 1.08 6.69 -51.93 -0.35 0.73 16 19 C -0.15 -1.25 5.99 -24.70 -0.15 -1.40 16 20 C -0.15 -0.93 7.16 -24.41 -0.17 -1.10 16 21 C 0.04 0.26 7.78 38.18 0.30 0.56 16 22 O -0.38 -3.40 9.78 -51.84 -0.51 -3.91 16 23 C -0.13 -2.21 5.36 -26.62 -0.14 -2.35 16 24 C 0.15 3.16 6.52 -3.71 -0.02 3.13 16 25 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 26 H 0.08 2.35 6.17 -51.93 -0.32 2.03 16 27 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 1.26 7.72 -51.93 -0.40 0.86 16 29 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.04 0.47 4.52 -51.93 -0.23 0.23 16 32 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.40 3.18 7.69 45.56 0.35 3.53 16 34 H 0.09 0.82 7.84 -51.93 -0.41 0.41 16 35 H 0.09 0.82 7.51 -51.93 -0.39 0.43 16 36 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 42 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 43 H 0.05 1.09 7.93 -51.93 -0.41 0.68 16 LS Contribution 336.04 15.07 5.06 5.06 Total: -1.00 -33.18 336.04 -8.76 -41.94 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -6.36 Total: 0.27 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: -1.00 Total: -2.83 kcal Atomic # 7 Polarization: -50.95 SS G_CDS: -0.48 Total: -51.43 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: -0.96 Total: -10.20 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.03 Total: 17.18 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.18 -8.76 -41.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000328895641.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.376 kcal (2) G-P(sol) polarization free energy of solvation -33.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds