Wall clock time and date at job start Tue Mar 31 2020 06:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86802 * 119.99880 * 2 1 4 4 H 1.48503 * 109.46782 * 272.17011 * 3 2 1 5 5 H 1.48499 * 109.47436 * 32.16695 * 3 2 1 6 6 H 1.48500 * 109.46898 * 152.17342 * 3 2 1 7 7 C 1.38813 * 120.00016 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00050 * 340.96467 * 7 2 1 9 9 N 1.36935 * 119.99695 * 160.95412 * 7 2 1 10 10 C 1.46927 * 120.63334 * 332.01082 * 9 7 2 11 11 C 1.53193 * 108.89106 * 233.68039 * 10 9 7 12 12 C 1.53048 * 109.31120 * 305.28874 * 11 10 9 13 13 C 1.53044 * 109.53403 * 61.36853 * 12 11 10 14 14 H 1.08999 * 109.49824 * 58.62070 * 13 12 11 15 15 C 1.53005 * 109.49725 * 178.68182 * 13 12 11 16 16 N 1.46490 * 109.47259 * 185.00138 * 15 13 12 17 17 C 1.29047 * 120.00430 * 117.77503 * 16 15 13 18 18 O 1.34914 * 120.00388 * 186.05732 * 17 16 15 19 19 C 1.50703 * 119.99448 * 6.06483 * 17 16 15 20 20 H 1.08994 * 109.82855 * 34.47352 * 19 17 16 21 21 C 1.54389 * 109.82647 * 273.59138 * 19 17 16 22 22 C 1.55443 * 102.18492 * 219.18436 * 21 19 17 23 23 C 1.54945 * 100.99251 * 34.04173 * 22 21 19 24 24 O 1.43232 * 109.82990 * 155.36965 * 19 17 16 25 25 C 1.47204 * 120.80970 * 152.15177 * 9 7 2 26 26 H 0.96994 * 119.99684 * 0.02562 * 1 2 3 27 27 H 1.08995 * 109.58669 * 113.81881 * 10 9 7 28 28 H 1.08995 * 109.58658 * 353.53748 * 10 9 7 29 29 H 1.08998 * 109.49958 * 65.24050 * 11 10 9 30 30 H 1.09003 * 109.49472 * 185.31218 * 11 10 9 31 31 H 1.08998 * 109.46258 * 181.38696 * 12 11 10 32 32 H 1.09001 * 109.46102 * 301.36405 * 12 11 10 33 33 H 1.09003 * 109.46800 * 304.99918 * 15 13 12 34 34 H 1.08997 * 109.46817 * 64.99783 * 15 13 12 35 35 H 0.96701 * 114.00394 * 179.97438 * 18 17 16 36 36 H 1.09003 * 110.84657 * 337.32518 * 21 19 17 37 37 H 1.09001 * 110.84415 * 100.94153 * 21 19 17 38 38 H 1.08998 * 111.06199 * 276.12222 * 22 21 19 39 39 H 1.09001 * 111.18566 * 152.00685 * 22 21 19 40 40 H 1.08999 * 110.31501 * 204.69392 * 23 22 21 41 41 H 1.08993 * 110.39466 * 82.55872 * 23 22 21 42 42 H 1.08995 * 109.53822 * 6.53400 * 25 9 7 43 43 H 1.09008 * 109.67912 * 246.22772 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4518 2.0729 -1.3991 5 1 1.4714 2.6391 0.7454 6 1 3.5700 1.4273 0.6536 7 6 2.0103 -1.2022 0.0005 8 1 1.5146 -2.1118 0.3060 9 7 3.3234 -1.2347 -0.3864 10 6 3.8472 -0.2486 -1.3414 11 6 4.5211 -0.9898 -2.5004 12 6 5.5796 -1.9445 -1.9433 13 6 4.9095 -2.9772 -1.0340 14 1 4.1581 -3.5275 -1.6003 15 6 5.9637 -3.9511 -0.5036 16 7 5.3070 -5.0083 0.2690 17 6 5.3912 -6.2368 -0.1170 18 8 4.6878 -7.1945 0.5220 19 6 6.2754 -6.6017 -1.2816 20 1 7.1593 -5.9641 -1.2887 21 6 5.4965 -6.4318 -2.6038 22 6 5.9813 -7.6561 -3.4298 23 6 6.1703 -8.7112 -2.3110 24 8 6.6679 -7.9756 -1.1819 25 6 4.2399 -2.2585 0.1416 26 1 -0.4849 0.8400 -0.0004 27 1 4.5760 0.3909 -0.8436 28 1 3.0281 0.3602 -1.7241 29 1 3.7729 -1.5584 -3.0527 30 1 4.9952 -0.2690 -3.1665 31 1 6.0778 -2.4553 -2.7673 32 1 6.3137 -1.3783 -1.3700 33 1 6.5027 -4.3943 -1.3409 34 1 6.6642 -3.4149 0.1366 35 1 4.8149 -8.0827 0.1613 36 1 4.4216 -6.4824 -2.4300 37 1 5.7674 -5.4979 -3.0963 38 1 6.9252 -7.4415 -3.9310 39 1 5.2229 -7.9739 -4.1453 40 1 6.8944 -9.4651 -2.6201 41 1 5.2175 -9.1805 -2.0666 42 1 3.6784 -2.9778 0.7377 43 1 5.0011 -1.7851 0.7618 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000328943992.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:35 Heat of formation + Delta-G solvation = -45.735660 kcal Electronic energy + Delta-G solvation = -23198.076933 eV Core-core repulsion = 19858.426476 eV Total energy + Delta-G solvation = -3339.650457 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.58241 -38.25223 -37.68579 -35.45751 -33.07013 -32.52846 -30.99876 -30.68563 -29.42295 -26.00411 -25.17205 -23.55179 -22.24043 -22.00416 -21.69022 -19.86780 -19.19091 -18.17532 -17.52610 -16.58303 -16.19888 -15.46025 -15.32476 -14.78722 -14.46884 -14.24186 -13.90722 -13.79222 -13.48896 -13.30322 -13.10051 -12.73479 -12.38341 -12.32768 -12.14793 -12.07027 -11.75808 -11.55346 -11.39759 -11.37711 -10.73514 -10.70439 -10.55611 -10.39396 -10.04174 -9.78605 -9.56678 -9.37773 -8.99456 -8.83505 -8.50366 -6.84533 -5.84554 -3.20268 2.18767 3.30474 3.37679 3.41195 3.54417 3.58486 3.88945 4.07758 4.36722 4.55212 4.61761 4.67585 4.85200 5.01085 5.07818 5.19150 5.26439 5.30763 5.33717 5.35700 5.46174 5.48815 5.60245 5.62688 5.69989 5.86090 5.97012 6.10255 6.14772 6.26066 6.35633 6.37570 6.45949 6.63472 6.73899 6.81738 7.00240 7.09123 7.17654 8.08742 8.17964 8.44573 9.06324 9.83252 10.22400 11.32002 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.027796 B = 0.004101 C = 0.003914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.107603 B = 6825.835491 C = 7151.541228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.020 3.980 3 Si 0.886 3.114 4 H -0.290 1.290 5 H -0.305 1.305 6 H -0.271 1.271 7 C -0.252 4.252 8 H 0.085 0.915 9 N -0.608 5.608 10 C 0.122 3.878 11 C -0.133 4.133 12 C -0.104 4.104 13 C -0.095 4.095 14 H 0.069 0.931 15 C 0.062 3.938 16 N -0.526 5.526 17 C 0.329 3.671 18 O -0.461 6.461 19 C 0.047 3.953 20 H 0.108 0.892 21 C -0.146 4.146 22 C -0.154 4.154 23 C 0.043 3.957 24 O -0.375 6.375 25 C 0.163 3.837 26 H 0.261 0.739 27 H 0.023 0.977 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.047 0.953 32 H 0.057 0.943 33 H 0.040 0.960 34 H 0.083 0.917 35 H 0.402 0.598 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.066 0.934 42 H 0.072 0.928 43 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.784 -16.006 -8.736 24.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.178 4.178 3 Si 0.717 3.283 4 H -0.218 1.218 5 H -0.233 1.233 6 H -0.196 1.196 7 C -0.381 4.381 8 H 0.103 0.897 9 N -0.331 5.331 10 C -0.003 4.003 11 C -0.173 4.173 12 C -0.142 4.142 13 C -0.116 4.116 14 H 0.088 0.912 15 C -0.067 4.067 16 N -0.257 5.257 17 C 0.099 3.901 18 O -0.255 6.255 19 C -0.014 4.014 20 H 0.126 0.874 21 C -0.185 4.185 22 C -0.192 4.192 23 C -0.033 4.033 24 O -0.294 6.294 25 C 0.037 3.963 26 H 0.071 0.929 27 H 0.041 0.959 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.058 0.942 34 H 0.102 0.898 35 H 0.255 0.745 36 H 0.105 0.895 37 H 0.112 0.888 38 H 0.100 0.900 39 H 0.108 0.892 40 H 0.110 0.890 41 H 0.085 0.915 42 H 0.090 0.910 43 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 15.160 -15.038 -7.509 22.635 hybrid contribution 0.953 0.328 -1.181 1.553 sum 16.113 -14.709 -8.690 23.484 Atomic orbital electron populations 1.69827 1.05688 1.26343 1.53878 1.25283 0.95237 0.97495 0.99777 0.86917 0.79956 0.84637 0.76829 1.21796 1.23337 1.19601 1.18962 0.84184 0.94611 1.40303 0.89713 1.44469 1.07937 1.32995 1.47729 1.21353 0.96960 0.92140 0.89869 1.21990 0.97981 0.98500 0.98793 1.21436 0.97757 0.97031 0.97965 1.21641 0.96274 0.94968 0.98668 0.91240 1.22254 0.96593 0.92237 0.95613 1.71369 1.26467 0.98395 1.29438 1.23088 0.89866 0.89084 0.88096 1.84661 1.63817 1.19551 1.57478 1.23206 0.98335 0.84930 0.94971 0.87441 1.23215 1.01478 1.00290 0.93513 1.23303 1.02846 0.94674 0.98341 1.23552 0.99768 0.94776 0.85203 1.88472 1.76370 1.19153 1.45376 1.20902 0.92342 0.90769 0.92309 0.92918 0.95892 0.91165 0.91894 0.92868 0.93379 0.92438 0.94225 0.89847 0.74492 0.89452 0.88841 0.89989 0.89215 0.89044 0.91533 0.90973 0.96224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -29.00 13.97 55.49 0.78 -28.22 16 2 C 0.02 0.61 5.26 -17.43 -0.09 0.51 16 3 Si 0.89 23.29 24.31 -169.99 -4.13 19.16 16 4 H -0.29 -7.30 6.60 56.52 0.37 -6.93 16 5 H -0.30 -8.13 7.11 56.52 0.40 -7.73 16 6 H -0.27 -7.03 6.57 56.52 0.37 -6.66 16 7 C -0.25 -7.42 10.06 -15.06 -0.15 -7.57 16 8 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 9 N -0.61 -15.26 2.78 -172.10 -0.48 -15.74 16 10 C 0.12 2.77 4.18 -3.71 -0.02 2.75 16 11 C -0.13 -2.39 6.08 -26.61 -0.16 -2.55 16 12 C -0.10 -1.59 5.17 -26.68 -0.14 -1.73 16 13 C -0.10 -1.62 2.55 -90.50 -0.23 -1.85 16 14 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 15 C 0.06 0.88 5.43 -4.04 -0.02 0.86 16 16 N -0.53 -8.53 10.14 -58.56 -0.59 -9.13 16 17 C 0.33 4.40 7.22 -13.45 -0.10 4.30 16 18 O -0.46 -5.95 13.60 -32.37 -0.44 -6.39 16 19 C 0.05 0.46 2.97 -27.15 -0.08 0.38 16 20 H 0.11 1.04 6.47 -51.93 -0.34 0.70 16 21 C -0.15 -1.21 6.16 -24.71 -0.15 -1.37 16 22 C -0.15 -0.89 7.16 -24.41 -0.17 -1.07 16 23 C 0.04 0.26 7.78 38.18 0.30 0.55 16 24 O -0.38 -3.39 9.87 -51.14 -0.50 -3.89 16 25 C 0.16 3.50 5.63 -3.56 -0.02 3.48 16 26 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 27 H 0.02 0.52 7.02 -51.93 -0.36 0.15 16 28 H 0.07 1.74 4.44 -51.93 -0.23 1.51 16 29 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.04 0.45 4.69 -51.93 -0.24 0.21 16 34 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.40 3.24 7.79 45.56 0.36 3.60 16 36 H 0.09 0.82 7.84 -51.93 -0.41 0.41 16 37 H 0.09 0.76 7.71 -51.93 -0.40 0.36 16 38 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 42 H 0.07 1.69 7.72 -51.93 -0.40 1.29 16 43 H 0.02 0.42 8.14 -51.92 -0.42 0.00 16 LS Contribution 330.21 15.07 4.98 4.98 Total: -1.00 -34.85 330.21 -7.73 -42.58 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -6.30 Total: -0.05 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: -1.04 Total: -3.29 kcal Atomic # 7 Polarization: -52.80 SS G_CDS: -0.30 Total: -53.09 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: -0.95 Total: -10.29 kcal Atomic # 14 Polarization: 23.29 SS G_CDS: -4.13 Total: 19.16 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -34.85 -7.73 -42.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000328943992.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.151 kcal (2) G-P(sol) polarization free energy of solvation -34.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds