Wall clock time and date at job start Tue Mar 31 2020 06:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29040 * 1 3 3 O 1.34924 * 120.00135 * 2 1 4 4 C 1.50704 * 120.00375 * 180.02562 * 2 1 3 5 5 C 1.52999 * 109.46635 * 359.97438 * 4 2 1 6 6 C 1.53004 * 109.47001 * 179.97438 * 5 4 2 7 7 C 1.53346 * 109.41904 * 295.13027 * 6 5 4 8 8 C 1.53195 * 109.14901 * 178.67276 * 7 6 5 9 9 N 1.46919 * 108.89273 * 54.57640 * 8 7 6 10 10 C 1.34778 * 120.63255 * 126.34238 * 9 8 7 11 11 O 1.21279 * 120.00169 * 359.97438 * 10 9 8 12 12 C 1.50698 * 120.00023 * 179.97438 * 10 9 8 13 13 C 1.53003 * 109.46931 * 180.02562 * 12 10 9 14 14 C 1.50706 * 109.47067 * 179.97438 * 13 12 10 15 15 H 1.07997 * 119.99699 * 0.02562 * 14 13 12 16 16 C 1.37874 * 119.99846 * 179.97438 * 14 13 12 17 17 N 1.31517 * 120.00051 * 0.02562 * 16 14 13 18 18 Si 1.86808 * 119.99888 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.46823 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46822 * 120.00587 * 18 16 14 21 21 H 1.48493 * 109.47037 * 240.00592 * 18 16 14 22 22 C 1.46933 * 118.74003 * 306.32349 * 9 8 7 23 23 C 1.53034 * 109.46014 * 174.99893 * 6 5 4 24 24 H 0.96996 * 120.00062 * 0.02562 * 1 2 3 25 25 H 0.96708 * 113.99555 * 359.97438 * 3 2 1 26 26 H 1.08991 * 109.46903 * 239.99957 * 4 2 1 27 27 H 1.08999 * 109.46995 * 119.99575 * 4 2 1 28 28 H 1.09001 * 109.47533 * 60.00332 * 5 4 2 29 29 H 1.08997 * 109.47446 * 299.99998 * 5 4 2 30 30 H 1.09001 * 109.45799 * 55.03056 * 6 5 4 31 31 H 1.08997 * 109.68637 * 58.70485 * 7 6 5 32 32 H 1.09002 * 109.47277 * 298.50741 * 7 6 5 33 33 H 1.09002 * 109.58720 * 294.71670 * 8 7 6 34 34 H 1.08996 * 109.58651 * 174.43567 * 8 7 6 35 35 H 1.09001 * 109.47488 * 299.99559 * 12 10 9 36 36 H 1.09001 * 109.47269 * 59.99982 * 12 10 9 37 37 H 1.08996 * 109.47074 * 299.99864 * 13 12 10 38 38 H 1.09001 * 109.47188 * 59.99897 * 13 12 10 39 39 H 0.97008 * 119.99666 * 180.02562 * 17 16 14 40 40 H 1.08994 * 109.58580 * 173.39910 * 22 9 8 41 41 H 1.09006 * 109.57831 * 293.67403 * 22 9 8 42 42 H 1.08994 * 109.50232 * 61.43679 * 23 6 5 43 43 H 1.09007 * 109.52628 * 301.35340 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2904 0.0000 0.0000 3 8 1.9650 1.1685 0.0000 4 6 2.0440 -1.3051 -0.0006 5 6 1.0497 -2.4680 -0.0005 6 6 1.8148 -3.7930 -0.0017 7 6 2.6006 -3.9268 -1.3117 8 6 3.3901 -5.2395 -1.2923 9 7 2.4633 -6.3482 -1.0268 10 6 2.4093 -7.4111 -1.8536 11 8 3.1298 -7.4587 -2.8280 12 6 1.4537 -8.5407 -1.5673 13 6 1.5923 -9.6127 -2.6502 14 6 0.6371 -10.7426 -2.3636 15 1 -0.0049 -10.7000 -1.4962 16 6 0.5820 -11.8300 -3.2094 17 7 1.3634 -11.8815 -4.2660 18 14 -0.6025 -13.2302 -2.8546 19 1 -1.3648 -12.9317 -1.6156 20 1 -1.5459 -13.3807 -3.9916 21 1 0.1611 -14.4910 -2.6748 22 6 1.5966 -6.2763 0.1575 23 6 0.8249 -4.9533 0.1242 24 1 -0.4850 0.8400 -0.0004 25 1 1.3966 1.9508 -0.0004 26 1 2.6706 -1.3631 0.8893 27 1 2.6706 -1.3624 -0.8906 28 1 0.4227 -2.4101 -0.8902 29 1 0.4234 -2.4105 0.8897 30 1 2.5071 -3.8134 0.8400 31 1 3.2903 -3.0889 -1.4133 32 1 1.9071 -3.9318 -2.1526 33 1 4.1463 -5.1996 -0.5082 34 1 3.8727 -5.3900 -2.2579 35 1 1.6855 -8.9751 -0.5949 36 1 0.4324 -8.1598 -1.5611 37 1 1.3608 -9.1786 -3.6228 38 1 2.6136 -9.9934 -2.6560 39 1 1.3243 -12.6465 -4.8613 40 1 0.8941 -7.1095 0.1473 41 1 2.2064 -6.3235 1.0599 42 1 0.1480 -4.9485 -0.7300 43 1 0.2505 -4.8440 1.0442 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330886124.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:21 Heat of formation + Delta-G solvation = -89.666561 kcal Electronic energy + Delta-G solvation = -21936.635361 eV Core-core repulsion = 18595.079918 eV Total energy + Delta-G solvation = -3341.555444 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.97847 -39.48948 -37.66359 -35.04842 -33.48750 -33.19683 -31.53138 -30.81309 -30.20125 -26.60437 -25.53473 -23.29570 -23.07477 -21.47416 -20.68662 -20.08783 -18.64753 -18.38564 -16.97251 -16.07261 -15.86904 -15.72160 -15.32748 -15.10878 -14.53805 -14.38433 -14.24949 -13.81973 -13.75389 -13.28780 -12.95356 -12.81270 -12.35313 -12.17238 -11.99555 -11.93843 -11.36149 -11.25291 -11.07445 -10.93080 -10.88074 -10.57078 -10.51773 -10.38168 -10.19475 -10.10095 -9.92146 -9.55983 -9.11719 -8.92182 -8.35234 -8.26993 -5.93182 -3.97323 1.92895 3.01674 3.28392 3.34612 3.37611 3.42126 3.45475 4.15150 4.49478 4.57018 4.60395 4.69517 4.93074 5.04229 5.15798 5.17566 5.31587 5.32413 5.41663 5.41782 5.58990 5.64959 5.70789 5.78660 5.80292 5.85935 5.94825 6.03875 6.08663 6.16124 6.26681 6.27126 6.30532 6.36109 6.82617 6.97215 7.78190 7.83725 7.89833 7.90536 8.10878 8.42211 8.81838 9.11582 9.66070 11.17830 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.035615 B = 0.002697 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.997438 B =10379.272567 C =10744.510298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.744 5.744 2 C 0.363 3.637 3 O -0.533 6.533 4 C -0.056 4.056 5 C -0.094 4.094 6 C -0.089 4.089 7 C -0.131 4.131 8 C 0.110 3.890 9 N -0.625 5.625 10 C 0.512 3.488 11 O -0.536 6.536 12 C -0.128 4.128 13 C 0.036 3.964 14 C -0.525 4.525 15 H 0.056 0.944 16 C 0.057 3.943 17 N -0.890 5.890 18 Si 0.892 3.108 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C 0.108 3.892 23 C -0.129 4.129 24 H 0.335 0.665 25 H 0.395 0.605 26 H 0.094 0.906 27 H 0.097 0.903 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.059 0.941 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.023 0.977 38 H 0.023 0.977 39 H 0.260 0.740 40 H 0.091 0.909 41 H 0.063 0.937 42 H 0.070 0.930 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.602 24.709 12.567 27.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.389 5.389 2 C 0.133 3.867 3 O -0.328 6.328 4 C -0.094 4.094 5 C -0.132 4.132 6 C -0.108 4.108 7 C -0.170 4.170 8 C -0.013 4.013 9 N -0.361 5.361 10 C 0.303 3.697 11 O -0.412 6.412 12 C -0.168 4.168 13 C -0.001 4.001 14 C -0.563 4.563 15 H 0.074 0.926 16 C -0.145 4.145 17 N -0.529 5.529 18 Si 0.720 3.280 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.015 4.015 23 C -0.167 4.167 24 H 0.153 0.847 25 H 0.249 0.751 26 H 0.112 0.888 27 H 0.115 0.885 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.108 0.892 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.041 0.959 38 H 0.041 0.959 39 H 0.070 0.930 40 H 0.110 0.890 41 H 0.082 0.918 42 H 0.088 0.912 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.033 23.526 11.870 26.372 hybrid contribution -0.907 0.886 0.205 1.284 sum 0.126 24.413 12.075 27.236 Atomic orbital electron populations 1.69670 1.06369 1.36537 1.26352 1.24884 0.87761 0.87348 0.86733 1.84862 1.42781 1.16124 1.88997 1.20527 0.97807 0.86471 1.04595 1.21396 0.96791 0.90910 1.04058 1.21260 0.97202 0.94244 0.98053 1.22106 0.99554 0.97325 0.97972 1.21461 0.91727 0.85564 1.02571 1.48286 1.40598 1.20321 1.26865 1.21564 0.83783 0.82827 0.81539 1.90649 1.43422 1.78954 1.28170 1.21870 0.96984 0.94651 1.03305 1.18912 0.97699 0.90981 0.92528 1.21263 1.21537 1.03591 1.09939 0.92571 1.25033 0.95895 0.98393 0.95136 1.70016 1.38520 1.30304 1.14021 0.86542 0.80968 0.82311 0.78180 1.19745 1.21042 1.21041 1.21689 0.93564 0.98494 0.87743 1.21946 0.97933 0.93986 1.02831 0.84694 0.75112 0.88790 0.88495 0.90817 0.90867 0.90973 0.90996 0.91351 0.92276 0.89240 0.90354 0.90312 0.95869 0.95868 0.93039 0.89041 0.91850 0.91170 0.90736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -6.08 12.73 32.47 0.41 -5.67 16 2 C 0.36 2.66 8.25 -13.45 -0.11 2.55 16 3 O -0.53 -3.27 13.58 -16.49 -0.22 -3.49 16 4 C -0.06 -0.37 5.57 -27.88 -0.16 -0.52 16 5 C -0.09 -0.72 3.91 -26.73 -0.10 -0.82 16 6 C -0.09 -0.72 2.15 -90.42 -0.19 -0.92 16 7 C -0.13 -1.26 5.16 -26.45 -0.14 -1.40 16 8 C 0.11 1.38 6.42 -3.71 -0.02 1.36 16 9 N -0.62 -9.30 2.97 -172.77 -0.51 -9.81 16 10 C 0.51 10.25 7.70 -10.99 -0.08 10.17 16 11 O -0.54 -13.00 15.39 5.56 0.09 -12.91 16 12 C -0.13 -2.67 3.99 -27.88 -0.11 -2.78 16 13 C 0.04 1.00 4.26 -27.88 -0.12 0.88 16 14 C -0.52 -15.05 9.11 -34.44 -0.31 -15.36 16 15 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 16 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 17 N -0.89 -27.72 13.29 55.43 0.74 -26.99 16 18 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 19 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 22 C 0.11 1.22 6.34 -3.71 -0.02 1.20 16 23 C -0.13 -1.20 5.36 -26.62 -0.14 -1.34 16 24 H 0.34 2.06 8.56 -40.82 -0.35 1.72 16 25 H 0.39 0.76 8.70 45.56 0.40 1.16 16 26 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.10 0.59 6.53 -51.93 -0.34 0.25 16 28 H 0.07 0.68 8.06 -51.93 -0.42 0.26 16 29 H 0.07 0.59 8.06 -51.93 -0.42 0.18 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.54 6.52 -51.93 -0.34 0.20 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.09 1.33 7.00 -51.93 -0.36 0.97 16 35 H 0.08 1.49 7.94 -51.93 -0.41 1.08 16 36 H 0.08 1.50 7.69 -51.93 -0.40 1.10 16 37 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 38 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 39 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 40 H 0.09 1.07 5.93 -51.93 -0.31 0.76 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.07 0.58 8.14 -51.92 -0.42 0.15 16 LS Contribution 346.76 15.07 5.23 5.23 Total: -1.00 -36.07 346.76 -7.21 -43.28 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -6.29 Total: -1.03 kcal Atomic # 6 Polarization: -3.80 SS G_CDS: -1.62 Total: -5.42 kcal Atomic # 7 Polarization: -43.10 SS G_CDS: 0.64 Total: -42.47 kcal Atomic # 8 Polarization: -16.27 SS G_CDS: -0.14 Total: -16.41 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -36.07 -7.21 -43.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330886124.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.386 kcal (2) G-P(sol) polarization free energy of solvation -36.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds