Wall clock time and date at job start Tue Mar 31 2020 06:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99970 * 2 1 4 4 H 1.48504 * 109.47023 * 269.99745 * 3 2 1 5 5 H 1.48502 * 109.47442 * 29.99705 * 3 2 1 6 6 H 1.48498 * 109.47139 * 149.99933 * 3 2 1 7 7 C 1.37876 * 120.00162 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99652 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00428 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.47466 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47212 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99781 * 359.97438 * 11 10 9 13 13 N 1.34771 * 119.99622 * 180.02562 * 11 10 9 14 14 C 1.46505 * 119.99622 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47212 * 179.97438 * 14 13 11 16 16 C 1.50697 * 109.47466 * 179.97438 * 15 14 13 17 17 O 1.21288 * 120.00038 * 0.02562 * 16 15 14 18 18 N 1.34777 * 120.00369 * 180.02562 * 16 15 14 19 19 C 1.46927 * 120.62757 * 359.71777 * 18 16 15 20 20 C 1.53632 * 108.54013 * 126.36982 * 19 18 16 21 21 C 1.53036 * 109.24130 * 54.85647 * 20 19 18 22 22 C 1.53041 * 109.53994 * 298.51106 * 21 20 19 23 23 C 1.46923 * 120.63207 * 180.02562 * 18 16 15 24 24 H 0.97006 * 119.99550 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46613 * 59.99978 * 9 7 2 26 26 H 1.09002 * 109.47120 * 300.00329 * 9 7 2 27 27 H 1.09001 * 109.46832 * 60.00036 * 10 9 7 28 28 H 1.09002 * 109.47153 * 300.00227 * 10 9 7 29 29 H 0.96996 * 120.00772 * 359.97438 * 13 11 10 30 30 H 1.09002 * 109.47068 * 299.99729 * 14 13 11 31 31 H 1.09001 * 109.47372 * 59.99816 * 14 13 11 32 32 H 1.09002 * 109.47153 * 300.00008 * 15 14 13 33 33 H 1.08998 * 109.47533 * 59.99637 * 15 14 13 34 34 H 1.09001 * 109.59036 * 246.19971 * 19 18 16 35 35 H 1.09001 * 109.58801 * 6.63134 * 19 18 16 36 36 H 1.08998 * 109.63452 * 294.86846 * 20 19 18 37 37 H 1.08996 * 109.45633 * 174.74360 * 20 19 18 38 38 H 1.09001 * 109.46244 * 178.48880 * 21 20 19 39 39 H 1.09007 * 109.46249 * 58.52993 * 21 20 19 40 40 H 1.08994 * 109.49924 * 301.41288 * 22 21 20 41 41 H 1.09001 * 109.50257 * 181.31486 * 22 21 20 42 42 H 1.08998 * 109.58421 * 353.36666 * 23 18 16 43 43 H 1.09001 * 109.58806 * 113.80165 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0216 -2.6366 0.0001 11 6 5.5286 -2.6366 0.0001 12 8 6.1350 -1.5862 -0.0004 13 7 6.2024 -3.8038 -0.0003 14 6 7.6674 -3.8038 -0.0008 15 6 8.1774 -5.2462 -0.0006 16 6 9.6844 -5.2463 -0.0017 17 8 10.2909 -4.1960 -0.0022 18 7 10.3583 -6.4135 -0.0022 19 6 9.6377 -7.6939 0.0045 20 6 10.1449 -8.5461 -1.1688 21 6 11.6663 -8.6810 -1.0735 22 6 12.3101 -7.2961 -1.1709 23 6 11.8274 -6.4297 -0.0028 24 1 -0.4850 0.8401 -0.0004 25 1 3.8752 -0.6797 0.8895 26 1 3.8746 -0.6808 -0.8905 27 1 3.6579 -3.1506 -0.8897 28 1 3.6586 -3.1502 0.8903 29 1 5.7175 -4.6438 -0.0002 30 1 8.0304 -3.2898 -0.8909 31 1 8.0311 -3.2900 0.8891 32 1 7.8144 -5.7598 0.8897 33 1 7.8138 -5.7604 -0.8902 34 1 9.8243 -8.2133 0.9445 35 1 8.5689 -7.5123 -0.1091 36 1 9.8806 -8.0663 -2.1111 37 1 9.6884 -9.5348 -1.1234 38 1 12.0272 -9.3075 -1.8892 39 1 11.9314 -9.1384 -0.1201 40 1 12.0254 -6.8280 -2.1132 41 1 13.3947 -7.3950 -1.1264 42 1 12.2040 -5.4137 -0.1214 43 1 12.1887 -6.8483 0.9365 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330912432.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:24 Heat of formation + Delta-G solvation = -95.763120 kcal Electronic energy + Delta-G solvation = -21594.534230 eV Core-core repulsion = 18252.714420 eV Total energy + Delta-G solvation = -3341.819810 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.61357 -39.18183 -37.79999 -35.07359 -33.44575 -33.41785 -31.93619 -31.36080 -30.42337 -26.60671 -25.68159 -24.10684 -23.15685 -21.27676 -21.10369 -19.84499 -19.12120 -17.64308 -17.18572 -16.30588 -16.25065 -15.72779 -15.43091 -15.18602 -15.00678 -14.52135 -14.42388 -14.06092 -13.98724 -13.60893 -13.21147 -13.10769 -12.83650 -12.53779 -12.48553 -12.01964 -11.77669 -11.58180 -11.47658 -11.38178 -11.21406 -11.07994 -10.92171 -10.14066 -10.11845 -10.01041 -9.74827 -9.21038 -9.13454 -9.07784 -8.84331 -8.47887 -6.00670 -3.99205 2.29589 2.50553 3.17970 3.41059 3.46511 3.48082 3.59525 4.14761 4.21729 4.33738 4.44932 4.52562 4.54013 4.61969 4.75180 4.77704 4.89953 4.99983 5.12568 5.23642 5.28260 5.33966 5.35053 5.43124 5.46281 5.52183 5.59532 5.76791 5.79836 5.98115 6.09727 6.12160 6.13145 6.62215 6.72866 6.96260 7.40545 7.47344 7.78298 7.82572 7.83339 8.52757 8.70467 9.02376 9.62710 11.12065 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.045363 B = 0.002459 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.094013 B =11386.215232 C =11844.769311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.068 3.932 3 Si 0.877 3.123 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.261 1.261 7 C -0.524 4.524 8 H 0.073 0.927 9 C 0.000 4.000 10 C -0.121 4.121 11 C 0.509 3.491 12 O -0.537 6.537 13 N -0.745 5.745 14 C 0.134 3.866 15 C -0.151 4.151 16 C 0.520 3.480 17 O -0.532 6.532 18 N -0.616 5.616 19 C 0.105 3.895 20 C -0.137 4.137 21 C -0.121 4.121 22 C -0.135 4.135 23 C 0.110 3.890 24 H 0.263 0.737 25 H 0.024 0.976 26 H 0.019 0.981 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.397 0.603 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.071 0.929 35 H 0.088 0.912 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.075 0.925 42 H 0.093 0.907 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.472 -23.325 -0.920 33.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.133 4.133 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.185 1.185 7 C -0.562 4.562 8 H 0.091 0.909 9 C -0.038 4.038 10 C -0.161 4.161 11 C 0.297 3.703 12 O -0.412 6.412 13 N -0.399 5.399 14 C 0.010 3.990 15 C -0.192 4.192 16 C 0.308 3.692 17 O -0.408 6.408 18 N -0.351 5.351 19 C -0.018 4.018 20 C -0.175 4.175 21 C -0.158 4.158 22 C -0.174 4.174 23 C -0.013 4.013 24 H 0.073 0.927 25 H 0.042 0.958 26 H 0.037 0.963 27 H 0.104 0.896 28 H 0.104 0.896 29 H 0.231 0.769 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.089 0.911 35 H 0.107 0.893 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.093 0.907 42 H 0.112 0.888 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 24.088 -21.834 -0.913 32.524 hybrid contribution 0.141 0.192 -0.049 0.243 sum 24.229 -21.643 -0.962 32.502 Atomic orbital electron populations 1.69918 1.06286 1.26947 1.51167 1.24977 0.94721 0.99261 0.94341 0.86794 0.80651 0.83344 0.78772 1.20240 1.21464 1.18478 1.21116 0.89292 0.94539 1.51260 0.90937 1.19378 0.96373 0.90296 0.97726 1.21662 0.87887 1.03259 1.03292 1.21536 0.91545 0.82741 0.74448 1.90674 1.70808 1.31436 1.48300 1.46144 1.06320 1.09327 1.78147 1.20924 0.80451 0.93943 1.03717 1.21859 0.92529 0.99856 1.04922 1.20494 0.89902 0.83155 0.75638 1.90753 1.70257 1.30789 1.49033 1.48123 1.06912 1.05934 1.74115 1.21891 0.97006 0.83987 0.98949 1.22007 0.96422 1.00251 0.98831 1.21522 0.95107 0.96921 1.02293 1.21929 1.00556 0.95793 0.99085 1.21604 0.79389 1.02089 0.98178 0.92747 0.95787 0.96252 0.89623 0.89600 0.76913 0.90985 0.90971 0.88128 0.88145 0.91058 0.89337 0.91272 0.90500 0.91579 0.91698 0.91430 0.90672 0.88850 0.91538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.25 13.96 55.43 0.77 -27.47 16 2 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 3 Si 0.88 22.98 27.47 -169.99 -4.67 18.31 16 4 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 5 H -0.29 -7.39 7.11 56.52 0.40 -6.98 16 6 H -0.26 -6.83 6.54 56.52 0.37 -6.46 16 7 C -0.52 -15.14 9.66 -34.44 -0.33 -15.47 16 8 H 0.07 2.17 7.99 -52.48 -0.42 1.75 16 9 C 0.00 0.00 3.33 -27.89 -0.09 -0.09 16 10 C -0.12 -2.36 5.64 -27.88 -0.16 -2.51 16 11 C 0.51 9.51 7.83 -10.99 -0.09 9.42 16 12 O -0.54 -12.53 15.98 5.56 0.09 -12.44 16 13 N -0.74 -9.88 5.56 -60.29 -0.33 -10.21 16 14 C 0.13 1.73 4.96 -4.04 -0.02 1.71 16 15 C -0.15 -1.24 4.16 -27.89 -0.12 -1.36 16 16 C 0.52 5.47 7.70 -10.99 -0.08 5.38 16 17 O -0.53 -7.98 15.40 5.55 0.09 -7.89 16 18 N -0.62 -4.72 2.97 -172.47 -0.51 -5.23 16 19 C 0.10 0.47 6.37 -3.48 -0.02 0.45 16 20 C -0.14 -0.54 6.10 -26.38 -0.16 -0.70 16 21 C -0.12 -0.50 5.88 -26.69 -0.16 -0.65 16 22 C -0.14 -0.72 6.08 -26.59 -0.16 -0.89 16 23 C 0.11 0.78 6.43 -3.69 -0.02 0.76 16 24 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 25 H 0.02 0.64 7.15 -51.93 -0.37 0.27 16 26 H 0.02 0.51 7.53 -51.93 -0.39 0.12 16 27 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 28 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 29 H 0.40 3.73 8.47 -40.82 -0.35 3.38 16 30 H 0.07 1.08 8.10 -51.93 -0.42 0.66 16 31 H 0.07 1.09 8.10 -51.93 -0.42 0.67 16 32 H 0.10 0.60 7.93 -51.93 -0.41 0.19 16 33 H 0.10 0.60 7.70 -51.93 -0.40 0.20 16 34 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.09 0.29 5.93 -51.93 -0.31 -0.02 16 36 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 38 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 39 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.09 0.86 7.00 -51.93 -0.36 0.49 16 43 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 347.34 15.07 5.23 5.23 Total: -1.00 -37.47 347.34 -8.09 -45.56 By element: Atomic # 1 Polarization: 3.40 SS G_CDS: -7.25 Total: -3.85 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: -1.51 Total: -2.01 kcal Atomic # 7 Polarization: -42.84 SS G_CDS: -0.07 Total: -42.92 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: 0.17 Total: -20.33 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -4.67 Total: 18.31 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -37.47 -8.09 -45.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330912432.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.201 kcal (2) G-P(sol) polarization free energy of solvation -37.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds