Wall clock time and date at job start Tue Mar 31 2020 06:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86798 * 120.00028 * 2 1 4 4 H 1.48502 * 109.47426 * 240.00185 * 3 2 1 5 5 H 1.48500 * 109.47178 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47001 * 120.00042 * 3 2 1 7 7 C 1.37885 * 120.00011 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99515 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99934 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47027 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47198 * 180.02562 * 10 9 7 12 12 N 1.46497 * 109.46922 * 179.97438 * 11 10 9 13 13 C 1.34784 * 119.99966 * 180.02562 * 12 11 10 14 14 O 1.21593 * 119.99720 * 359.97438 * 13 12 11 15 15 N 1.34776 * 120.00158 * 180.02562 * 13 12 11 16 16 C 1.49619 * 126.07201 * 359.97045 * 15 13 12 17 17 C 1.51524 * 102.49179 * 154.37393 * 16 15 13 18 18 H 1.08997 * 111.12721 * 288.13834 * 17 16 15 19 19 C 1.51560 * 123.79597 * 151.79915 * 17 16 15 20 20 C 1.56333 * 101.81229 * 207.81632 * 19 17 16 21 21 C 1.56394 * 105.77878 * 25.22195 * 20 19 17 22 22 H 1.09001 * 110.34340 * 125.72439 * 21 20 19 23 23 O 1.42897 * 110.88720 * 248.58907 * 21 20 19 24 24 C 1.49702 * 103.79866 * 7.28878 * 21 20 19 25 25 H 1.09002 * 108.54930 * 77.65896 * 24 21 20 26 26 C 1.49287 * 126.07200 * 179.97438 * 15 13 12 27 27 H 0.96998 * 120.00329 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.47097 * 59.99783 * 9 7 2 29 29 H 1.09006 * 109.46768 * 300.00061 * 9 7 2 30 30 H 1.08998 * 109.47183 * 59.99227 * 10 9 7 31 31 H 1.09009 * 109.46914 * 299.99950 * 10 9 7 32 32 H 1.08998 * 109.47193 * 59.99925 * 11 10 9 33 33 H 1.08997 * 109.46658 * 299.99696 * 11 10 9 34 34 H 0.96998 * 120.00251 * 359.97438 * 12 11 10 35 35 H 1.09002 * 110.80364 * 36.12902 * 16 15 13 36 36 H 1.08995 * 110.97027 * 272.69860 * 16 15 13 37 37 H 1.08991 * 110.96594 * 325.94497 * 19 17 16 38 38 H 1.09005 * 110.96115 * 89.69162 * 19 17 16 39 39 H 1.09000 * 110.19429 * 144.51390 * 20 19 17 40 40 H 1.09006 * 110.19054 * 266.28902 * 20 19 17 41 41 H 0.96700 * 114.00803 * 294.54998 * 23 21 20 42 42 H 1.09000 * 110.39463 * 54.78778 * 26 15 13 43 43 H 1.09006 * 110.39580 * 292.39209 * 26 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1028 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 7 2.4323 -6.1006 -0.0018 13 6 1.9831 -7.3713 -0.0030 14 8 0.7876 -7.5935 -0.0030 15 7 2.8589 -8.3957 -0.0030 16 6 4.3506 -8.2794 -0.0025 17 6 4.7808 -9.5840 0.6371 18 1 4.5563 -9.5915 1.7036 19 6 6.1040 -10.2662 0.3528 20 6 5.7529 -11.7670 0.6140 21 6 4.2118 -11.8905 0.3782 22 1 4.0015 -12.6736 -0.3503 23 8 3.5277 -12.1497 1.6057 24 6 3.8252 -10.5503 -0.1654 25 1 4.1159 -10.5049 -1.2150 26 6 2.5130 -9.8480 -0.0037 27 1 -0.4850 0.8400 0.0004 28 1 0.6240 -2.5567 -0.8902 29 1 0.6247 -2.5571 0.8897 30 1 2.8720 -3.6043 0.8894 31 1 2.8719 -3.6043 -0.8906 32 1 0.8539 -5.0446 -0.8914 33 1 0.8534 -5.0451 0.8886 34 1 3.3860 -5.9233 -0.0021 35 1 4.6724 -7.4290 0.5987 36 1 4.7361 -8.2010 -1.0190 37 1 6.4081 -10.1114 -0.6824 38 1 6.8763 -9.9211 1.0403 39 1 6.2956 -12.4070 -0.0817 40 1 5.9969 -12.0371 1.6415 41 1 3.7413 -13.0055 2.0021 42 1 1.8522 -10.0807 -0.8387 43 1 2.0460 -10.1277 0.9407 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331382629.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:12 Heat of formation + Delta-G solvation = -76.554083 kcal Electronic energy + Delta-G solvation = -22014.341006 eV Core-core repulsion = 18673.354163 eV Total energy + Delta-G solvation = -3340.986844 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.04420 -39.15823 -36.64603 -35.30090 -34.28403 -33.23829 -31.31692 -30.13066 -29.32310 -26.65719 -26.04139 -23.91977 -22.63632 -20.80894 -20.53951 -20.30257 -19.59265 -17.94590 -17.58155 -16.51802 -16.22653 -15.68101 -15.38071 -14.99851 -14.88732 -14.44296 -14.34654 -13.85010 -13.68989 -13.38988 -13.06180 -12.65610 -12.34101 -12.23956 -11.83179 -11.75540 -11.66624 -11.50664 -11.36123 -11.07404 -10.85999 -10.67512 -10.61372 -10.58706 -10.25115 -9.97698 -9.81561 -9.39933 -9.10466 -8.88571 -8.40891 -8.34128 -5.98842 -4.01935 2.60379 3.33776 3.38423 3.40329 3.40831 3.51153 3.84507 4.07423 4.24361 4.36895 4.46934 4.58354 4.64979 4.85676 4.92658 5.11626 5.13772 5.23196 5.32232 5.36628 5.36680 5.47107 5.56201 5.67915 5.72513 5.78180 5.86032 5.88868 6.00526 6.09273 6.23974 6.60151 6.67335 6.89520 7.07148 7.17219 7.24384 7.67077 7.80645 8.00237 8.16298 8.41202 8.82689 9.04581 9.61858 11.12472 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.037811 B = 0.002601 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.338598 B =10762.686337 C =11321.593354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.120 4.120 11 C 0.135 3.865 12 N -0.740 5.740 13 C 0.719 3.281 14 O -0.590 6.590 15 N -0.648 5.648 16 C 0.116 3.884 17 C -0.117 4.117 18 H 0.094 0.906 19 C -0.102 4.102 20 C -0.154 4.154 21 C 0.124 3.876 22 H 0.064 0.936 23 O -0.558 6.558 24 C -0.121 4.121 25 H 0.087 0.913 26 C 0.155 3.845 27 H 0.262 0.738 28 H 0.019 0.981 29 H 0.019 0.981 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.392 0.608 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.377 0.623 42 H 0.069 0.931 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.559 -26.605 0.316 30.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.158 4.158 11 C 0.012 3.988 12 N -0.395 5.395 13 C 0.421 3.579 14 O -0.468 6.468 15 N -0.389 5.389 16 C -0.007 4.007 17 C -0.136 4.136 18 H 0.112 0.888 19 C -0.140 4.140 20 C -0.192 4.192 21 C 0.064 3.936 22 H 0.081 0.919 23 O -0.363 6.363 24 C -0.140 4.140 25 H 0.105 0.895 26 C 0.033 3.967 27 H 0.071 0.929 28 H 0.038 0.962 29 H 0.038 0.962 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.226 0.774 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.095 0.905 41 H 0.224 0.776 42 H 0.087 0.913 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 13.151 -25.934 0.179 29.079 hybrid contribution 1.236 0.502 0.057 1.335 sum 14.386 -25.432 0.236 29.220 Atomic orbital electron populations 1.69954 1.06054 1.26779 1.50493 1.25032 0.94857 0.99273 0.95315 0.86641 0.79552 0.83124 0.78555 1.20263 1.21282 1.20267 1.21171 0.92937 0.90968 1.51006 0.92721 1.19023 0.93853 0.90761 0.97705 1.21885 0.99778 0.93339 1.00760 1.21514 0.91316 0.84111 1.01888 1.45395 1.10414 1.04242 1.79419 1.15513 0.84286 0.80129 0.77941 1.90922 1.13691 1.83749 1.58480 1.48824 1.05190 1.05325 1.79574 1.21671 0.80668 0.97827 1.00527 1.22599 0.95773 0.94244 1.01033 0.88764 1.21843 0.95980 0.94073 1.02098 1.23806 0.95693 0.97064 1.02639 1.21651 0.90646 0.95315 0.85975 0.91855 1.86609 1.69300 1.41797 1.38582 1.21793 0.97089 0.94544 1.00528 0.89481 1.20603 0.95133 0.78278 1.02729 0.92875 0.96229 0.96232 0.92812 0.92820 0.91964 0.91961 0.77400 0.90498 0.91088 0.90837 0.90881 0.90841 0.90531 0.77565 0.91267 0.90720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.18 13.29 55.43 0.74 -26.44 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.52 -14.80 9.11 -34.44 -0.31 -15.12 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.02 0.63 4.97 -27.88 -0.14 0.49 16 10 C -0.12 -2.43 5.27 -26.73 -0.14 -2.57 16 11 C 0.13 2.56 5.67 -4.04 -0.02 2.53 16 12 N -0.74 -11.96 5.52 -65.23 -0.36 -12.32 16 13 C 0.72 12.53 8.52 -86.91 -0.74 11.79 16 14 O -0.59 -12.82 16.71 5.28 0.09 -12.73 16 15 N -0.65 -8.61 3.43 -177.29 -0.61 -9.22 16 16 C 0.12 1.06 6.39 -3.05 -0.02 1.04 16 17 C -0.12 -0.91 3.10 -89.45 -0.28 -1.19 16 18 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 19 C -0.10 -0.54 6.63 -25.67 -0.17 -0.71 16 20 C -0.15 -0.70 6.78 -23.12 -0.16 -0.86 16 21 C 0.12 0.75 4.17 -26.54 -0.11 0.64 16 22 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 23 O -0.56 -4.03 12.89 -35.23 -0.45 -4.49 16 24 C -0.12 -0.97 2.37 -91.24 -0.22 -1.19 16 25 H 0.09 0.63 8.00 -51.93 -0.42 0.21 16 26 C 0.15 1.82 6.70 -4.12 -0.03 1.80 16 27 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 28 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.05 1.04 8.14 -51.92 -0.42 0.62 16 32 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 33 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.39 5.22 7.01 -40.82 -0.29 4.93 16 35 H 0.08 0.66 7.34 -51.93 -0.38 0.28 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 40 H 0.08 0.33 8.03 -51.93 -0.42 -0.08 16 41 H 0.38 1.09 9.12 45.56 0.42 1.50 16 42 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.07 1.00 7.80 -51.93 -0.41 0.59 16 LS Contribution 347.03 15.07 5.23 5.23 Total: -1.00 -35.21 347.03 -9.35 -44.56 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -6.53 Total: 0.52 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: -2.43 Total: -1.79 kcal Atomic # 7 Polarization: -47.75 SS G_CDS: -0.23 Total: -47.98 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: -0.37 Total: -17.22 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -35.21 -9.35 -44.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331382629.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.996 kcal (2) G-P(sol) polarization free energy of solvation -35.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds