Wall clock time and date at job start Tue Mar 31 2020 06:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00196 * 2 1 4 4 H 1.48493 * 109.47563 * 269.99966 * 3 2 1 5 5 H 1.48503 * 109.46941 * 30.00325 * 3 2 1 6 6 H 1.48507 * 109.46792 * 150.00256 * 3 2 1 7 7 C 1.37883 * 119.99968 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00282 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99706 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47326 * 180.02562 * 9 7 2 11 11 C 1.52993 * 109.47551 * 180.02562 * 10 9 7 12 12 N 1.46498 * 109.47343 * 180.02562 * 11 10 9 13 13 C 1.34774 * 120.00258 * 180.02562 * 12 11 10 14 14 O 1.21582 * 120.00059 * 359.97438 * 13 12 11 15 15 N 1.34775 * 120.00059 * 180.02562 * 13 12 11 16 16 C 1.49622 * 126.07203 * 359.97349 * 15 13 12 17 17 C 1.51519 * 102.49617 * 154.35349 * 16 15 13 18 18 H 1.08999 * 111.54998 * 287.99027 * 17 16 15 19 19 C 1.51564 * 123.35224 * 151.63738 * 17 16 15 20 20 C 1.56332 * 101.81606 * 207.98076 * 19 17 16 21 21 C 1.56003 * 105.77010 * 25.43175 * 20 19 17 22 22 H 1.09001 * 110.64563 * 248.27503 * 21 20 19 23 23 O 1.42903 * 110.51917 * 125.59006 * 21 20 19 24 24 C 1.49705 * 103.98532 * 6.96645 * 21 20 19 25 25 H 1.08997 * 108.55024 * 77.97784 * 24 21 20 26 26 C 1.48098 * 126.28805 * 179.00547 * 15 13 12 27 27 H 0.96999 * 119.99681 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.47504 * 60.00344 * 9 7 2 29 29 H 1.09001 * 109.47315 * 300.00272 * 9 7 2 30 30 H 1.09001 * 109.46556 * 59.99754 * 10 9 7 31 31 H 1.09001 * 109.47138 * 300.00371 * 10 9 7 32 32 H 1.09004 * 109.47016 * 59.99983 * 11 10 9 33 33 H 1.09001 * 109.47137 * 300.00291 * 11 10 9 34 34 H 0.97005 * 119.99663 * 0.02562 * 12 11 10 35 35 H 1.09001 * 110.80796 * 36.10273 * 16 15 13 36 36 H 1.09004 * 110.80551 * 272.60010 * 16 15 13 37 37 H 1.09003 * 110.95964 * 326.11099 * 19 17 16 38 38 H 1.08995 * 110.95656 * 89.84465 * 19 17 16 39 39 H 1.09002 * 110.18841 * 266.35894 * 20 19 17 40 40 H 1.09002 * 110.19019 * 144.51440 * 20 19 17 41 41 H 0.96700 * 114.00311 * 65.43646 * 23 21 20 42 42 H 1.09000 * 109.83743 * 54.28936 * 26 15 13 43 43 H 1.08997 * 110.37574 * 292.27623 * 26 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 6 1.4801 -4.9871 -0.0012 12 7 2.4320 -6.1007 -0.0006 13 6 1.9828 -7.3713 -0.0015 14 8 0.7874 -7.5935 -0.0024 15 7 2.8586 -8.3958 -0.0004 16 6 4.3503 -8.2795 0.0013 17 6 4.7800 -9.5835 0.6422 18 1 4.5601 -9.5966 1.7096 19 6 6.1048 -10.2591 0.3493 20 6 5.7610 -11.7625 0.6057 21 6 4.2242 -11.8920 0.3712 22 1 3.7086 -12.1007 1.3086 23 8 3.9484 -12.9137 -0.5891 24 6 3.8250 -10.5505 -0.1603 25 1 4.1078 -10.4959 -1.2115 26 6 2.5209 -9.8376 0.0195 27 1 -0.4849 0.8401 -0.0004 28 1 0.6240 -2.5567 -0.8903 29 1 0.6246 -2.5571 0.8896 30 1 2.8718 -3.6044 0.8895 31 1 2.8718 -3.6045 -0.8905 32 1 0.8537 -5.0446 -0.8914 33 1 0.8531 -5.0451 0.8886 34 1 3.3858 -5.9234 0.0005 35 1 4.6717 -7.4286 0.6020 36 1 4.7338 -8.2035 -1.0162 37 1 6.4037 -10.0986 -0.6865 38 1 6.8785 -9.9136 1.0349 39 1 6.0094 -12.0355 1.6313 40 1 6.3034 -12.3972 -0.0951 41 1 4.1878 -13.8037 -0.2963 42 1 1.8441 -10.0704 -0.8026 43 1 2.0683 -10.1082 0.9734 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331382630.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:14 Heat of formation + Delta-G solvation = -77.814579 kcal Electronic energy + Delta-G solvation = -21916.989340 eV Core-core repulsion = 18575.947837 eV Total energy + Delta-G solvation = -3341.041503 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.13098 -39.20387 -36.85222 -35.34893 -34.39005 -33.26653 -31.34942 -30.13256 -29.33945 -26.68111 -25.98150 -23.96857 -22.66433 -20.98079 -20.60673 -20.34982 -19.64707 -17.73318 -17.61610 -16.87075 -16.30269 -15.71364 -15.44815 -15.19331 -14.74278 -14.47159 -14.21866 -13.86893 -13.84770 -13.29540 -13.01144 -12.70453 -12.52548 -12.27875 -12.04643 -11.80269 -11.76760 -11.65418 -11.23288 -10.95960 -10.88857 -10.69851 -10.60470 -10.57277 -10.38979 -10.03345 -9.83858 -9.42315 -9.10881 -8.94077 -8.46438 -8.35683 -6.00283 -4.03313 2.54377 3.31658 3.34758 3.37912 3.40638 3.43514 3.75668 4.03402 4.21427 4.45647 4.50118 4.52873 4.62743 4.78146 4.92039 5.03415 5.08377 5.18633 5.31465 5.33563 5.35403 5.48206 5.50798 5.61235 5.67118 5.73082 5.80212 5.84697 5.93786 6.03958 6.21385 6.56571 6.64910 6.86416 7.04562 7.12461 7.21019 7.65760 7.78842 7.98799 8.10633 8.39715 8.77341 9.03393 9.60638 11.11045 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.039740 B = 0.002545 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.408951 B =11000.947488 C =11592.177783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.120 4.120 11 C 0.135 3.865 12 N -0.739 5.739 13 C 0.720 3.280 14 O -0.589 6.589 15 N -0.647 5.647 16 C 0.116 3.884 17 C -0.120 4.120 18 H 0.092 0.908 19 C -0.101 4.101 20 C -0.154 4.154 21 C 0.125 3.875 22 H 0.065 0.935 23 O -0.563 6.563 24 C -0.120 4.120 25 H 0.087 0.913 26 C 0.152 3.848 27 H 0.261 0.739 28 H 0.019 0.981 29 H 0.019 0.981 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.393 0.607 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.379 0.621 42 H 0.073 0.927 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.387 -25.888 1.864 29.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.158 4.158 11 C 0.012 3.988 12 N -0.394 5.394 13 C 0.422 3.578 14 O -0.467 6.467 15 N -0.388 5.388 16 C -0.007 4.007 17 C -0.140 4.140 18 H 0.111 0.889 19 C -0.139 4.139 20 C -0.191 4.191 21 C 0.065 3.935 22 H 0.083 0.917 23 O -0.368 6.368 24 C -0.139 4.139 25 H 0.106 0.894 26 C 0.029 3.971 27 H 0.071 0.929 28 H 0.038 0.962 29 H 0.038 0.962 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.227 0.773 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.096 0.904 41 H 0.226 0.774 42 H 0.091 0.909 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 13.016 -25.295 1.504 28.487 hybrid contribution 1.132 0.597 0.336 1.323 sum 14.148 -24.698 1.840 28.522 Atomic orbital electron populations 1.69967 1.06054 1.26667 1.50567 1.25036 0.94862 0.99298 0.95320 0.86579 0.79778 0.83451 0.78079 1.20668 1.21216 1.19920 1.21202 0.92971 0.90944 1.50894 0.92667 1.19030 0.93857 0.90779 0.97715 1.21886 0.99786 0.93312 1.00785 1.21527 0.91304 0.84084 1.01927 1.45392 1.10473 1.04199 1.79306 1.15480 0.84220 0.80121 0.77962 1.90925 1.13661 1.83727 1.58390 1.48496 1.05369 1.05221 1.79677 1.21696 0.80599 0.97609 1.00765 1.22597 0.96209 0.94578 1.00568 0.88945 1.21849 0.95805 0.93894 1.02400 1.23680 0.95764 0.97344 1.02357 1.21478 0.93976 0.86714 0.91302 0.91717 1.86593 1.87284 1.18709 1.44243 1.21667 0.96347 0.93623 1.02310 0.89426 1.20450 0.95422 0.78930 1.02288 0.92931 0.96221 0.96227 0.92801 0.92790 0.91910 0.91940 0.77348 0.90300 0.90842 0.90671 0.90793 0.90851 0.90398 0.77422 0.90905 0.91763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.04 13.29 55.43 0.74 -26.30 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.52 -14.68 9.11 -34.44 -0.31 -15.00 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.48 16 10 C -0.12 -2.39 5.27 -26.73 -0.14 -2.53 16 11 C 0.13 2.50 5.67 -4.05 -0.02 2.48 16 12 N -0.74 -11.61 5.52 -65.23 -0.36 -11.97 16 13 C 0.72 12.16 8.52 -86.92 -0.74 11.42 16 14 O -0.59 -12.49 16.71 5.29 0.09 -12.40 16 15 N -0.65 -8.23 3.40 -178.32 -0.61 -8.84 16 16 C 0.12 1.01 6.37 -3.05 -0.02 0.99 16 17 C -0.12 -0.84 3.11 -89.45 -0.28 -1.11 16 18 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 19 C -0.10 -0.52 6.62 -25.67 -0.17 -0.69 16 20 C -0.15 -0.72 6.76 -23.33 -0.16 -0.88 16 21 C 0.12 0.80 4.16 -26.76 -0.11 0.69 16 22 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 23 O -0.56 -4.01 13.31 -35.23 -0.47 -4.48 16 24 C -0.12 -1.00 2.33 -91.23 -0.21 -1.21 16 25 H 0.09 0.82 7.97 -51.93 -0.41 0.41 16 26 C 0.15 1.71 6.71 -4.79 -0.03 1.68 16 27 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 28 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.39 5.04 7.01 -40.82 -0.29 4.75 16 35 H 0.08 0.62 7.34 -51.93 -0.38 0.24 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.08 0.34 8.01 -51.93 -0.42 -0.07 16 41 H 0.38 1.01 9.12 45.56 0.42 1.43 16 42 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 43 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 347.65 15.07 5.24 5.24 Total: -1.00 -34.92 347.65 -9.37 -44.30 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -6.54 Total: 0.05 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: -2.44 Total: -2.18 kcal Atomic # 7 Polarization: -46.87 SS G_CDS: -0.23 Total: -47.10 kcal Atomic # 8 Polarization: -16.50 SS G_CDS: -0.38 Total: -16.88 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.92 -9.37 -44.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331382630.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.519 kcal (2) G-P(sol) polarization free energy of solvation -34.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds