Wall clock time and date at job start Tue Mar 31 2020 05:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99926 * 2 1 4 4 H 1.48495 * 109.47450 * 270.00313 * 3 2 1 5 5 H 1.48503 * 109.46935 * 30.00376 * 3 2 1 6 6 H 1.48498 * 109.46740 * 149.99901 * 3 2 1 7 7 C 1.37878 * 120.00110 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99839 * 173.55872 * 7 2 1 9 9 C 1.50699 * 120.00076 * 353.55088 * 7 2 1 10 10 C 1.53009 * 115.54630 * 85.40549 * 9 7 2 11 11 N 1.46499 * 109.46983 * 65.14462 * 10 9 7 12 12 C 1.34773 * 120.00122 * 178.28899 * 11 10 9 13 13 O 1.21585 * 119.99685 * 359.97438 * 12 11 10 14 14 N 1.34777 * 120.00232 * 180.02562 * 12 11 10 15 15 C 1.46500 * 119.99843 * 179.97438 * 14 12 11 16 16 C 1.53000 * 109.46685 * 179.97438 * 15 14 12 17 17 O 1.42902 * 110.43425 * 300.69725 * 16 15 14 18 18 C 1.54888 * 110.48943 * 63.24088 * 16 15 14 19 19 C 1.55243 * 102.58814 * 156.67284 * 18 16 15 20 20 C 1.54265 * 104.22912 * 322.08768 * 19 18 16 21 21 C 1.53865 * 106.60383 * 23.60734 * 20 19 18 22 22 C 1.52993 * 117.50091 * 231.07571 * 9 7 2 23 23 C 1.52994 * 117.50036 * 299.73986 * 9 7 2 24 24 H 0.96998 * 120.00303 * 5.06815 * 1 2 3 25 25 H 1.08992 * 109.46932 * 305.14308 * 10 9 7 26 26 H 1.08999 * 109.46660 * 185.14203 * 10 9 7 27 27 H 0.97001 * 119.99712 * 358.28076 * 11 10 9 28 28 H 0.97001 * 119.99601 * 359.97438 * 14 12 11 29 29 H 1.09000 * 109.47492 * 59.99485 * 15 14 12 30 30 H 1.08999 * 109.47032 * 299.99831 * 15 14 12 31 31 H 0.96696 * 113.99955 * 59.30219 * 17 16 15 32 32 H 1.08993 * 110.75359 * 275.06566 * 18 16 15 33 33 H 1.09001 * 110.75292 * 38.44010 * 18 16 15 34 34 H 1.08995 * 110.46771 * 203.39532 * 19 18 16 35 35 H 1.08999 * 110.46856 * 80.77745 * 19 18 16 36 36 H 1.09004 * 110.03106 * 264.31796 * 20 19 18 37 37 H 1.09001 * 110.03057 * 142.90001 * 20 19 18 38 38 H 1.09000 * 110.03800 * 240.71604 * 21 20 19 39 39 H 1.09000 * 110.02863 * 119.28480 * 21 20 19 40 40 H 1.09007 * 117.49986 * 215.00170 * 22 9 7 41 41 H 1.08998 * 117.50022 * 0.02833 * 22 9 7 42 42 H 1.09004 * 117.49959 * 359.97438 * 23 9 7 43 43 H 1.09000 * 117.50080 * 144.97023 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0795 -1.1969 -0.1055 9 6 1.2583 -2.4951 0.1455 10 6 0.7022 -3.0860 -1.1518 11 7 1.8112 -3.4583 -2.0336 12 6 1.5601 -4.0344 -3.2258 13 8 0.4130 -4.2455 -3.5693 14 7 2.5804 -4.3774 -4.0368 15 6 2.3073 -5.0041 -5.3325 16 6 3.6285 -5.2893 -6.0495 17 8 4.3596 -4.0778 -6.2489 18 6 4.4742 -6.3064 -5.2437 19 6 5.3983 -6.9157 -6.3322 20 6 4.4952 -7.0261 -7.5779 21 6 3.3700 -5.9921 -7.3983 22 6 1.7472 -3.4738 1.2149 23 6 0.4419 -2.7017 1.4228 24 1 -0.4850 0.8367 -0.0742 25 1 0.0755 -2.3456 -1.6489 26 1 0.1076 -3.9703 -0.9225 27 1 2.7263 -3.2900 -1.7593 28 1 3.4955 -4.2093 -3.7625 29 1 1.7018 -4.3322 -5.9408 30 1 1.7684 -5.9388 -5.1776 31 1 4.5744 -3.6089 -5.4309 32 1 5.0591 -5.8000 -4.4760 33 1 3.8382 -7.0741 -4.8029 34 1 5.7488 -7.9014 -6.0264 35 1 6.2418 -6.2542 -6.5298 36 1 4.0735 -8.0289 -7.6457 37 1 5.0695 -6.8007 -8.4766 38 1 2.4021 -6.4931 -7.3788 39 1 3.3982 -5.2649 -8.2097 40 1 1.6727 -4.5387 0.9945 41 1 2.6084 -3.1765 1.8133 42 1 0.4449 -1.8968 2.1578 43 1 -0.4916 -3.2583 1.3390 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331423548.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:36 Heat of formation + Delta-G solvation = -72.503818 kcal Electronic energy + Delta-G solvation = -22540.067027 eV Core-core repulsion = 19199.255816 eV Total energy + Delta-G solvation = -3340.811211 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.01639 -38.85179 -36.74998 -35.08128 -33.94104 -33.23614 -31.97421 -29.50513 -28.91892 -26.32910 -25.30343 -24.02130 -21.28182 -21.07461 -20.35946 -20.02832 -19.37986 -18.02297 -16.92951 -16.24001 -15.84477 -15.52024 -15.18765 -15.05006 -14.64074 -14.17032 -13.96823 -13.63158 -13.56692 -13.19924 -12.72080 -12.61809 -12.29530 -11.84746 -11.66657 -11.59551 -11.47553 -11.36876 -11.00672 -10.95271 -10.90638 -10.70308 -10.53466 -10.27865 -10.05275 -9.77281 -9.53247 -8.98595 -8.89337 -8.50077 -8.26868 -7.99017 -6.08181 -4.17016 3.13435 3.25263 3.33339 3.34580 3.75863 3.93366 4.25637 4.33977 4.36062 4.49449 4.80674 4.92548 5.14911 5.19725 5.20073 5.28082 5.35376 5.39810 5.50714 5.66894 5.70839 5.74177 5.82120 5.88757 5.99124 6.02620 6.10315 6.33605 6.46355 6.58846 6.67551 6.68637 6.83821 7.08201 7.29898 7.38405 7.45071 7.46357 7.56612 7.80566 8.33354 8.62259 8.83505 9.17518 9.49807 10.99594 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.022266 B = 0.003683 C = 0.003471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.234238 B = 7600.533979 C = 8064.084551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.074 3.926 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.501 4.501 8 H 0.059 0.941 9 C 0.028 3.972 10 C 0.182 3.818 11 N -0.719 5.719 12 C 0.699 3.301 13 O -0.602 6.602 14 N -0.754 5.754 15 C 0.120 3.880 16 C 0.117 3.883 17 O -0.550 6.550 18 C -0.150 4.150 19 C -0.120 4.120 20 C -0.122 4.122 21 C -0.109 4.109 22 C -0.211 4.211 23 C -0.148 4.148 24 H 0.262 0.738 25 H 0.070 0.930 26 H 0.034 0.966 27 H 0.395 0.605 28 H 0.389 0.611 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.375 0.625 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.739 -12.189 -10.579 18.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.130 4.130 3 Si 0.717 3.283 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.538 4.538 8 H 0.077 0.923 9 C 0.028 3.972 10 C 0.058 3.942 11 N -0.372 5.372 12 C 0.398 3.602 13 O -0.481 6.481 14 N -0.412 5.412 15 C -0.005 4.005 16 C 0.076 3.924 17 O -0.356 6.356 18 C -0.187 4.187 19 C -0.157 4.157 20 C -0.160 4.160 21 C -0.147 4.147 22 C -0.248 4.248 23 C -0.186 4.186 24 H 0.072 0.928 25 H 0.088 0.912 26 H 0.053 0.947 27 H 0.229 0.771 28 H 0.222 0.778 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.223 0.777 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.083 0.917 41 H 0.096 0.904 42 H 0.102 0.898 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.401 -12.416 -11.434 18.854 hybrid contribution 1.242 1.330 0.894 2.028 sum 9.643 -11.086 -10.540 18.083 Atomic orbital electron populations 1.69972 1.05896 1.26948 1.48125 1.24986 0.94795 0.98941 0.94289 0.86635 0.79911 0.83580 0.78142 1.20675 1.21164 1.19844 1.20318 0.92762 0.88620 1.52147 0.92272 1.19036 0.98587 0.93874 0.85737 1.20857 0.86608 0.96663 0.90043 1.45139 1.11309 1.63600 1.17105 1.16012 0.84501 0.78863 0.80784 1.90878 1.19818 1.61789 1.75610 1.45010 1.08269 1.68257 1.19656 1.21773 0.96517 0.98635 0.83560 1.22323 0.89662 0.84888 0.95510 1.86558 1.76258 1.36745 1.35995 1.23243 0.98575 0.99105 0.97817 1.22355 0.98086 1.00612 0.94696 1.22105 0.96612 0.98789 0.98457 1.22089 0.99313 0.97640 0.95701 1.23019 0.98656 0.95659 1.07472 1.22491 0.92288 1.01075 1.02718 0.92825 0.91200 0.94739 0.77140 0.77790 0.91087 0.91021 0.77663 0.91037 0.90200 0.91705 0.91309 0.91681 0.91648 0.90094 0.90293 0.91675 0.90408 0.89817 0.91645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.22 12.91 55.43 0.72 -23.51 16 2 C 0.07 1.96 5.39 -17.82 -0.10 1.86 16 3 Si 0.89 20.44 29.55 -169.99 -5.02 15.42 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.50 -12.74 8.63 -34.44 -0.30 -13.04 16 8 H 0.06 1.47 7.82 -52.48 -0.41 1.06 16 9 C 0.03 0.66 1.38 -155.66 -0.21 0.45 16 10 C 0.18 4.15 5.50 -4.04 -0.02 4.13 16 11 N -0.72 -13.86 5.48 -65.23 -0.36 -14.22 16 12 C 0.70 13.24 8.57 -86.92 -0.74 12.50 16 13 O -0.60 -13.94 16.34 5.29 0.09 -13.86 16 14 N -0.75 -10.25 5.16 -65.23 -0.34 -10.58 16 15 C 0.12 1.49 4.71 -4.04 -0.02 1.47 16 16 C 0.12 1.15 0.89 -88.96 -0.08 1.07 16 17 O -0.55 -5.88 13.05 -35.23 -0.46 -6.34 16 18 C -0.15 -1.26 5.61 -24.55 -0.14 -1.40 16 19 C -0.12 -0.93 6.82 -24.88 -0.17 -1.10 16 20 C -0.12 -0.93 6.80 -25.62 -0.17 -1.11 16 21 C -0.11 -0.97 6.12 -25.62 -0.16 -1.13 16 22 C -0.21 -4.33 9.96 -26.70 -0.27 -4.59 16 23 C -0.15 -3.35 9.42 -26.70 -0.25 -3.60 16 24 H 0.26 7.00 8.32 -40.82 -0.34 6.66 16 25 H 0.07 1.85 8.14 -51.93 -0.42 1.43 16 26 H 0.03 0.78 8.09 -51.93 -0.42 0.36 16 27 H 0.40 6.81 8.38 -40.82 -0.34 6.47 16 28 H 0.39 4.12 7.17 -40.82 -0.29 3.82 16 29 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.38 3.17 7.91 45.56 0.36 3.53 16 32 H 0.07 0.56 7.99 -51.93 -0.41 0.14 16 33 H 0.08 0.69 8.06 -51.93 -0.42 0.27 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.08 0.65 7.83 -51.93 -0.41 0.24 16 39 H 0.08 0.74 8.07 -51.93 -0.42 0.32 16 40 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 41 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 42 H 0.08 2.02 8.14 -51.93 -0.42 1.60 16 43 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 352.80 15.07 5.32 5.32 Total: -1.00 -30.93 352.80 -9.24 -40.17 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: -6.55 Total: 12.10 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: -2.63 Total: -4.49 kcal Atomic # 7 Polarization: -48.34 SS G_CDS: 0.02 Total: -48.31 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -0.37 Total: -20.20 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.93 -9.24 -40.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331423548.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.334 kcal (2) G-P(sol) polarization free energy of solvation -30.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds