Wall clock time and date at job start Tue Mar 31 2020 06:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99654 * 2 1 4 4 H 1.48504 * 109.47282 * 90.00203 * 3 2 1 5 5 H 1.48500 * 109.47595 * 329.99703 * 3 2 1 6 6 H 1.48507 * 109.46991 * 209.99753 * 3 2 1 7 7 C 1.37875 * 120.00316 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00134 * 187.13546 * 7 2 1 9 9 C 1.50700 * 119.99852 * 7.13875 * 7 2 1 10 10 C 1.53001 * 115.54706 * 275.21060 * 9 7 2 11 11 N 1.46504 * 109.47037 * 297.93721 * 10 9 7 12 12 C 1.34779 * 119.99875 * 184.67244 * 11 10 9 13 13 O 1.21583 * 120.00149 * 0.02562 * 12 11 10 14 14 N 1.34779 * 120.00031 * 179.97438 * 12 11 10 15 15 C 1.46495 * 120.00202 * 180.02562 * 14 12 11 16 16 C 1.52998 * 109.47217 * 180.02562 * 15 14 12 17 17 H 1.09000 * 110.43635 * 305.70351 * 16 15 14 18 18 C 1.54887 * 110.48432 * 68.24304 * 16 15 14 19 19 C 1.55032 * 102.68568 * 156.51901 * 18 16 15 20 20 C 1.54272 * 104.27591 * 322.23311 * 19 18 16 21 21 C 1.53873 * 106.60026 * 23.51504 * 20 19 18 22 22 H 1.08996 * 110.03013 * 119.28388 * 21 20 19 23 23 O 1.42897 * 110.07167 * 240.69532 * 21 20 19 24 24 C 1.52999 * 117.50249 * 129.53964 * 9 7 2 25 25 C 1.52995 * 117.49910 * 60.87625 * 9 7 2 26 26 H 0.96994 * 119.99714 * 175.40370 * 1 2 3 27 27 H 1.08993 * 109.47710 * 57.93648 * 10 9 7 28 28 H 1.09001 * 109.47094 * 177.93782 * 10 9 7 29 29 H 0.96997 * 120.00279 * 4.66921 * 11 10 9 30 30 H 0.96998 * 119.99375 * 0.02562 * 14 12 11 31 31 H 1.09001 * 109.46827 * 300.00363 * 15 14 12 32 32 H 1.08999 * 109.47142 * 60.00273 * 15 14 12 33 33 H 1.09004 * 110.75412 * 274.93283 * 18 16 15 34 34 H 1.08997 * 110.75882 * 38.30308 * 18 16 15 35 35 H 1.08995 * 110.52502 * 203.49316 * 19 18 16 36 36 H 1.09001 * 110.48034 * 80.95038 * 19 18 16 37 37 H 1.09004 * 110.02746 * 264.22967 * 20 19 18 38 38 H 1.08998 * 110.07522 * 142.82598 * 20 19 18 39 39 H 0.96702 * 114.00230 * 297.18982 * 23 21 20 40 40 H 1.09004 * 117.49476 * 0.02562 * 24 9 7 41 41 H 1.08999 * 117.49907 * 145.01478 * 24 9 7 42 42 H 1.08999 * 117.49825 * 214.97773 * 25 9 7 43 43 H 1.08998 * 117.49970 * 359.97438 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4403 -0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0783 -1.1975 0.1167 9 6 1.2599 -2.4941 -0.1611 10 6 0.6777 -3.0853 1.1244 11 7 1.7651 -3.3914 2.0573 12 6 1.4976 -4.0104 3.2243 13 8 0.3540 -4.3150 3.5027 14 7 2.4980 -4.2925 4.0823 15 6 2.2074 -4.9657 5.3505 16 6 3.5077 -5.1654 6.1316 17 1 4.2427 -5.6884 5.5198 18 6 4.0693 -3.8024 6.6069 19 6 4.9486 -4.2008 7.8199 20 6 4.1558 -5.3301 8.5100 21 6 3.2396 -5.9433 7.4365 22 1 3.4797 -6.9976 7.2987 23 8 1.8705 -5.7994 7.8198 24 6 1.7687 -3.4727 -1.2214 25 6 0.4686 -2.6990 -1.4544 26 1 -0.4849 -0.8373 -0.0673 27 1 -0.0006 -2.3647 1.5811 28 1 0.1324 -3.9993 0.8896 29 1 2.6776 -3.1487 1.8351 30 1 3.4104 -4.0497 3.8600 31 1 1.5216 -4.3547 5.9373 32 1 1.7505 -5.9350 5.1509 33 1 4.6722 -3.3395 5.8256 34 1 3.2621 -3.1391 6.9175 35 1 5.0737 -3.3548 8.4956 36 1 5.9190 -4.5664 7.4839 37 1 3.5563 -4.9219 9.3237 38 1 4.8398 -6.0870 8.8938 39 1 1.6389 -6.2664 8.6343 40 1 2.6424 -3.1762 -1.8019 41 1 1.6884 -4.5376 -1.0034 42 1 -0.4665 -3.2553 -1.3895 43 1 0.4862 -1.8932 -2.1882 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331504447.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:46 Heat of formation + Delta-G solvation = -78.673325 kcal Electronic energy + Delta-G solvation = -22404.782044 eV Core-core repulsion = 19063.703303 eV Total energy + Delta-G solvation = -3341.078741 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.74810 -38.89746 -37.00704 -35.35159 -34.05807 -33.24576 -31.88575 -29.93078 -27.98081 -26.25862 -24.86450 -23.89374 -21.36177 -21.07883 -20.33633 -19.96382 -19.58209 -17.85074 -17.58969 -16.58406 -15.68638 -15.62369 -15.10230 -14.88562 -14.45210 -14.15074 -13.76250 -13.71591 -13.58315 -13.21172 -12.75736 -12.65411 -12.47888 -12.24427 -11.68342 -11.47261 -11.42401 -10.99479 -10.89725 -10.88503 -10.80229 -10.74737 -10.46068 -10.16590 -10.14755 -9.74171 -9.52242 -8.77615 -8.61501 -8.45908 -8.36280 -7.98673 -6.36939 -4.12564 3.25664 3.41065 3.44232 3.59444 3.85327 3.94017 4.25368 4.31340 4.48654 4.61250 4.82284 4.98331 5.04362 5.14546 5.20740 5.23809 5.32394 5.34884 5.47380 5.57058 5.68428 5.75295 5.87807 5.89560 6.05354 6.06708 6.18934 6.27684 6.28853 6.47306 6.56678 6.70603 6.87033 6.88813 7.21807 7.24491 7.34731 7.44162 7.58854 8.20314 8.36128 8.70020 8.84602 9.24865 9.63706 11.02662 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.020560 B = 0.003681 C = 0.003349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.547129 B = 7603.924191 C = 8358.662599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.029 3.971 3 Si 1.069 2.931 4 H -0.289 1.289 5 H -0.284 1.284 6 H -0.289 1.289 7 C -0.576 4.576 8 H 0.052 0.948 9 C 0.006 3.994 10 C 0.178 3.822 11 N -0.720 5.720 12 C 0.698 3.302 13 O -0.604 6.604 14 N -0.755 5.755 15 C 0.161 3.839 16 C -0.098 4.098 17 H 0.089 0.911 18 C -0.120 4.120 19 C -0.123 4.123 20 C -0.157 4.157 21 C 0.108 3.892 22 H 0.058 0.942 23 O -0.557 6.557 24 C -0.194 4.194 25 C -0.172 4.172 26 H 0.277 0.723 27 H 0.060 0.940 28 H 0.037 0.963 29 H 0.397 0.603 30 H 0.391 0.609 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.375 0.625 40 H 0.080 0.920 41 H 0.067 0.933 42 H 0.069 0.931 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.764 -10.964 14.299 20.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.178 4.178 3 Si 0.897 3.103 4 H -0.215 1.215 5 H -0.210 1.210 6 H -0.215 1.215 7 C -0.614 4.614 8 H 0.071 0.929 9 C 0.005 3.995 10 C 0.054 3.946 11 N -0.372 5.372 12 C 0.397 3.603 13 O -0.483 6.483 14 N -0.411 5.411 15 C 0.036 3.964 16 C -0.117 4.117 17 H 0.107 0.893 18 C -0.157 4.157 19 C -0.160 4.160 20 C -0.195 4.195 21 C 0.048 3.952 22 H 0.076 0.924 23 O -0.363 6.363 24 C -0.231 4.231 25 C -0.210 4.210 26 H 0.088 0.912 27 H 0.078 0.922 28 H 0.056 0.944 29 H 0.231 0.769 30 H 0.224 0.776 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.223 0.777 40 H 0.099 0.901 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 9.442 -9.229 14.054 19.283 hybrid contribution 1.150 -1.824 0.253 2.171 sum 10.592 -11.053 14.307 20.954 Atomic orbital electron populations 1.70690 1.06833 1.31798 1.44093 1.25756 0.96529 1.02272 0.93205 0.83549 0.74697 0.75272 0.76735 1.21543 1.21002 1.21513 1.21182 0.94082 0.89673 1.56435 0.92948 1.19337 0.98955 0.95451 0.85734 1.20850 0.87592 0.97057 0.89116 1.45019 1.12113 1.62016 1.18089 1.16032 0.84623 0.79095 0.80519 1.90870 1.19881 1.60220 1.77368 1.45135 1.09390 1.66100 1.20506 1.20814 0.95406 0.97497 0.82657 1.22315 0.97646 0.96870 0.94878 0.89323 1.22635 0.99348 0.96402 0.97356 1.22322 0.98380 0.97969 0.97361 1.22935 0.99101 0.98696 0.98770 1.22361 0.81746 0.97724 0.93334 0.92356 1.86627 1.26186 1.76658 1.46783 1.22888 0.97847 0.95591 1.06792 1.22745 0.93363 1.02165 1.02771 0.91184 0.92218 0.94436 0.76919 0.77595 0.90953 0.92110 0.91072 0.90638 0.91465 0.91547 0.90742 0.91455 0.77750 0.90136 0.91432 0.91278 0.89578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.33 13.57 55.43 0.75 -25.57 16 2 C 0.03 0.80 5.39 -17.82 -0.10 0.70 16 3 Si 1.07 24.45 29.91 -169.99 -5.08 19.36 16 4 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.58 -15.13 8.44 -34.44 -0.29 -15.42 16 8 H 0.05 1.36 7.82 -52.49 -0.41 0.95 16 9 C 0.01 0.15 0.99 -155.66 -0.15 -0.01 16 10 C 0.18 4.18 5.43 -4.04 -0.02 4.16 16 11 N -0.72 -14.82 5.46 -65.22 -0.36 -15.18 16 12 C 0.70 14.24 8.57 -86.91 -0.74 13.50 16 13 O -0.60 -14.82 16.34 5.29 0.09 -14.74 16 14 N -0.75 -11.54 5.42 -65.23 -0.35 -11.89 16 15 C 0.16 2.25 4.31 -4.05 -0.02 2.23 16 16 C -0.10 -0.97 2.88 -88.96 -0.26 -1.22 16 17 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 18 C -0.12 -1.13 6.11 -24.66 -0.15 -1.28 16 19 C -0.12 -0.92 6.83 -24.99 -0.17 -1.09 16 20 C -0.16 -1.09 6.61 -25.61 -0.17 -1.26 16 21 C 0.11 0.91 4.12 -25.61 -0.11 0.80 16 22 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 23 O -0.56 -5.41 11.69 -35.23 -0.41 -5.82 16 24 C -0.19 -4.09 9.96 -26.69 -0.27 -4.36 16 25 C -0.17 -3.91 8.74 -26.69 -0.23 -4.15 16 26 H 0.28 8.08 6.19 -40.82 -0.25 7.83 16 27 H 0.06 1.59 7.82 -51.93 -0.41 1.19 16 28 H 0.04 0.87 8.11 -51.93 -0.42 0.45 16 29 H 0.40 7.50 8.24 -40.82 -0.34 7.16 16 30 H 0.39 4.85 8.40 -40.82 -0.34 4.51 16 31 H 0.07 1.19 7.54 -51.93 -0.39 0.80 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.85 8.00 -51.93 -0.42 0.43 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.52 7.96 -51.93 -0.41 0.10 16 38 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.38 1.99 9.11 45.56 0.42 2.41 16 40 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 41 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 42 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 43 H 0.09 2.07 8.14 -51.93 -0.42 1.65 16 LS Contribution 350.82 15.07 5.29 5.29 Total: -1.00 -33.10 350.82 -9.18 -42.28 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: -6.42 Total: 13.66 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: -2.68 Total: -7.39 kcal Atomic # 7 Polarization: -52.69 SS G_CDS: 0.04 Total: -52.64 kcal Atomic # 8 Polarization: -20.23 SS G_CDS: -0.33 Total: -20.56 kcal Atomic # 14 Polarization: 24.45 SS G_CDS: -5.08 Total: 19.36 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.10 -9.18 -42.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331504447.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.393 kcal (2) G-P(sol) polarization free energy of solvation -33.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds