Wall clock time and date at job start Tue Mar 31 2020 06:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 120.00056 * 2 1 4 4 H 1.48500 * 109.47177 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46918 * 299.99355 * 3 2 1 6 6 H 1.48494 * 109.47541 * 59.99349 * 3 2 1 7 7 C 1.37882 * 120.00130 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00080 * 172.91882 * 7 2 1 9 9 C 1.50697 * 119.99973 * 352.92365 * 7 2 1 10 10 C 1.53007 * 115.54976 * 84.52775 * 9 7 2 11 11 N 1.46504 * 109.46807 * 39.68375 * 10 9 7 12 12 C 1.34776 * 120.00052 * 181.04508 * 11 10 9 13 13 O 1.21587 * 119.99801 * 359.97438 * 12 11 10 14 14 N 1.34777 * 119.99998 * 179.72349 * 12 11 10 15 15 C 1.46500 * 119.99950 * 180.27477 * 14 12 11 16 16 C 1.53000 * 109.47348 * 179.97438 * 15 14 12 17 17 H 1.08995 * 110.43202 * 307.54460 * 16 15 14 18 18 C 1.54890 * 110.48435 * 70.22574 * 16 15 14 19 19 C 1.54887 * 102.74882 * 156.61924 * 18 16 15 20 20 C 1.54267 * 104.19608 * 322.06075 * 19 18 16 21 21 C 1.53872 * 106.59614 * 23.60706 * 20 19 18 22 22 H 1.08998 * 110.06984 * 240.68986 * 21 20 19 23 23 O 1.42902 * 110.02843 * 119.29166 * 21 20 19 24 24 C 1.52994 * 117.51877 * 230.23337 * 9 7 2 25 25 C 1.52998 * 60.00092 * 107.48155 * 24 9 7 26 26 H 0.96999 * 120.00223 * 5.03582 * 1 2 3 27 27 H 1.08990 * 109.47348 * 279.68368 * 10 9 7 28 28 H 1.08997 * 109.46875 * 159.67657 * 10 9 7 29 29 H 0.97002 * 120.00223 * 1.04865 * 11 10 9 30 30 H 0.97002 * 120.00218 * 0.28009 * 14 12 11 31 31 H 1.09003 * 109.47230 * 300.00265 * 15 14 12 32 32 H 1.09001 * 109.46795 * 60.00023 * 15 14 12 33 33 H 1.09003 * 110.75676 * 274.94064 * 18 16 15 34 34 H 1.09006 * 110.75434 * 38.30636 * 18 16 15 35 35 H 1.08996 * 110.48538 * 203.37857 * 19 18 16 36 36 H 1.09000 * 110.48174 * 80.73891 * 19 18 16 37 37 H 1.08998 * 110.03070 * 264.31837 * 20 19 18 38 38 H 1.08996 * 110.06913 * 142.91442 * 20 19 18 39 39 H 0.96692 * 114.00569 * 62.83000 * 23 21 20 40 40 H 1.09005 * 117.49820 * 214.97419 * 24 9 7 41 41 H 1.08997 * 117.49887 * 359.97438 * 24 9 7 42 42 H 1.08996 * 117.50066 * 252.51163 * 25 24 9 43 43 H 1.09004 * 117.51798 * 107.48077 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8903 2.3965 1.2123 7 6 2.0045 -1.1941 0.0005 8 1 3.0783 -1.1977 -0.1148 9 6 1.2597 -2.4941 0.1619 10 6 0.6733 -3.0826 -1.1230 11 7 1.6223 -2.8953 -2.2233 12 6 1.3084 -3.3192 -3.4636 13 8 0.2377 -3.8574 -3.6692 14 7 2.1791 -3.1418 -4.4769 15 6 1.8353 -3.5971 -5.8262 16 6 2.9869 -3.2771 -6.7814 17 1 3.2617 -2.2250 -6.7071 18 6 4.2077 -4.1818 -6.4809 19 6 4.9756 -4.1776 -7.8260 20 6 3.8646 -4.2055 -8.8960 21 6 2.6002 -3.6330 -8.2317 22 1 1.8058 -4.3794 -8.2339 23 8 2.1710 -2.4600 -8.9259 24 6 1.7703 -3.4749 1.2193 25 6 0.4721 -2.7010 1.4572 26 1 -0.4850 0.8368 -0.0737 27 1 -0.2625 -2.5768 -1.3603 28 1 0.4856 -4.1470 -0.9824 29 1 2.4767 -2.4663 -2.0592 30 1 3.0335 -2.7128 -4.3128 31 1 1.6617 -4.6732 -5.8134 32 1 0.9324 -3.0875 -6.1626 33 1 4.8188 -3.7544 -5.6858 34 1 3.8864 -5.1909 -6.2226 35 1 5.6064 -5.0626 -7.9079 36 1 5.5738 -3.2714 -7.9209 37 1 3.6845 -5.2304 -9.2205 38 1 4.1504 -3.5890 -9.7482 39 1 1.9139 -2.6184 -9.8444 40 1 1.6887 -4.5394 0.9996 41 1 2.6455 -3.1801 1.7982 42 1 0.4930 -1.8970 2.1928 43 1 -0.4639 -3.2561 1.3939 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331504449.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:49 Heat of formation + Delta-G solvation = -75.688895 kcal Electronic energy + Delta-G solvation = -22353.929860 eV Core-core repulsion = 19012.980533 eV Total energy + Delta-G solvation = -3340.949326 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.65613 -38.79147 -36.72522 -35.51414 -33.97309 -33.08856 -31.99473 -29.90330 -27.90190 -26.22050 -25.28752 -23.77878 -21.16150 -21.07514 -20.44134 -19.88702 -19.34982 -17.52993 -17.40973 -16.34821 -15.81772 -15.43529 -15.14237 -14.97309 -14.63980 -14.04565 -13.85533 -13.54484 -13.48205 -13.04718 -12.70029 -12.61247 -12.57003 -11.98047 -11.59291 -11.54438 -11.41313 -11.03559 -10.94483 -10.88169 -10.87528 -10.71540 -10.51776 -10.21144 -10.16227 -9.67863 -9.41692 -8.91768 -8.70947 -8.49930 -8.24465 -7.76563 -6.08273 -4.17459 3.23999 3.32408 3.33822 3.35111 3.95153 3.98738 4.29381 4.31561 4.34544 4.67015 4.99022 5.03293 5.08108 5.19077 5.21977 5.28192 5.34231 5.36858 5.45284 5.60059 5.70952 5.79911 5.85085 5.97062 6.03332 6.09095 6.19519 6.35616 6.53336 6.62323 6.75435 6.91574 6.95498 7.12331 7.38549 7.44345 7.44617 7.52895 7.73346 7.80391 8.35601 8.82315 8.86894 9.36898 9.49751 10.99473 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.019215 B = 0.003773 C = 0.003498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.839519 B = 7418.941876 C = 8001.764252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.077 3.923 3 Si 0.888 3.112 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.504 4.504 8 H 0.061 0.939 9 C 0.029 3.971 10 C 0.184 3.816 11 N -0.713 5.713 12 C 0.697 3.303 13 O -0.610 6.610 14 N -0.753 5.753 15 C 0.152 3.848 16 C -0.098 4.098 17 H 0.093 0.907 18 C -0.120 4.120 19 C -0.122 4.122 20 C -0.157 4.157 21 C 0.106 3.894 22 H 0.063 0.937 23 O -0.564 6.564 24 C -0.211 4.211 25 C -0.152 4.152 26 H 0.261 0.739 27 H 0.064 0.936 28 H 0.033 0.967 29 H 0.400 0.600 30 H 0.393 0.607 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.376 0.624 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.082 0.918 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.702 -7.470 -15.309 19.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.128 4.128 3 Si 0.716 3.284 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.209 1.209 7 C -0.541 4.541 8 H 0.079 0.921 9 C 0.028 3.972 10 C 0.060 3.940 11 N -0.366 5.366 12 C 0.397 3.603 13 O -0.490 6.490 14 N -0.409 5.409 15 C 0.027 3.973 16 C -0.117 4.117 17 H 0.111 0.889 18 C -0.157 4.157 19 C -0.160 4.160 20 C -0.195 4.195 21 C 0.047 3.953 22 H 0.081 0.919 23 O -0.369 6.369 24 C -0.248 4.248 25 C -0.190 4.190 26 H 0.071 0.929 27 H 0.082 0.918 28 H 0.051 0.949 29 H 0.235 0.765 30 H 0.227 0.773 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.223 0.777 40 H 0.084 0.916 41 H 0.095 0.905 42 H 0.100 0.900 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.648 -7.566 -14.816 18.309 hybrid contribution 1.011 1.135 -0.398 1.571 sum 8.658 -6.430 -15.214 18.649 Atomic orbital electron populations 1.69986 1.05937 1.26803 1.47685 1.24982 0.94740 0.98878 0.94168 0.86612 0.80177 0.83964 0.77679 1.19692 1.21052 1.20941 1.20313 0.92888 0.88616 1.52308 0.92136 1.19044 0.98210 0.93937 0.86003 1.20689 0.91550 0.96490 0.85310 1.45107 1.22355 1.62721 1.06412 1.16043 0.83616 0.79777 0.80885 1.90847 1.23837 1.50624 1.83718 1.45021 1.21033 1.67011 1.07885 1.21065 0.96527 0.99336 0.80414 1.22212 0.95336 1.01714 0.92426 0.88868 1.22586 0.95755 0.99983 0.97397 1.22293 0.97249 1.01977 0.94442 1.22895 0.96101 1.01402 0.99071 1.22411 0.94758 0.86794 0.91363 0.91909 1.86579 1.87797 1.33834 1.28704 1.23080 0.98328 0.95679 1.07741 1.22494 0.92569 1.01178 1.02799 0.92888 0.91768 0.94909 0.76457 0.77348 0.92026 0.91774 0.90742 0.90803 0.91513 0.91384 0.91314 0.90937 0.77702 0.91607 0.90460 0.89955 0.91666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.16 12.97 55.43 0.72 -23.44 16 2 C 0.08 2.03 5.39 -17.82 -0.10 1.94 16 3 Si 0.89 20.37 29.55 -169.99 -5.02 15.35 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.50 -12.79 7.43 -34.44 -0.26 -13.04 16 8 H 0.06 1.50 7.82 -52.49 -0.41 1.09 16 9 C 0.03 0.68 1.71 -155.66 -0.27 0.42 16 10 C 0.18 4.31 5.75 -4.04 -0.02 4.29 16 11 N -0.71 -14.97 5.34 -65.22 -0.35 -15.31 16 12 C 0.70 14.34 8.57 -86.92 -0.74 13.60 16 13 O -0.61 -14.83 16.34 5.29 0.09 -14.75 16 14 N -0.75 -11.73 5.45 -65.22 -0.36 -12.09 16 15 C 0.15 2.07 4.96 -4.04 -0.02 2.05 16 16 C -0.10 -1.03 2.62 -88.97 -0.23 -1.27 16 17 H 0.09 1.08 8.08 -51.93 -0.42 0.66 16 18 C -0.12 -1.05 6.19 -24.74 -0.15 -1.20 16 19 C -0.12 -0.92 6.83 -25.07 -0.17 -1.09 16 20 C -0.16 -1.14 6.61 -25.61 -0.17 -1.31 16 21 C 0.11 0.97 3.83 -25.62 -0.10 0.88 16 22 H 0.06 0.55 7.84 -51.93 -0.41 0.14 16 23 O -0.56 -5.63 13.22 -35.23 -0.47 -6.09 16 24 C -0.21 -4.47 9.88 -26.73 -0.26 -4.73 16 25 C -0.15 -3.51 9.51 -26.73 -0.25 -3.77 16 26 H 0.26 7.01 8.32 -40.82 -0.34 6.67 16 27 H 0.06 1.71 8.14 -51.93 -0.42 1.29 16 28 H 0.03 0.75 7.94 -51.93 -0.41 0.33 16 29 H 0.40 7.86 7.47 -40.82 -0.30 7.56 16 30 H 0.39 5.15 8.45 -40.82 -0.35 4.81 16 31 H 0.06 0.85 8.02 -51.93 -0.42 0.43 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.66 7.97 -51.93 -0.41 0.25 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.49 7.95 -51.93 -0.41 0.08 16 39 H 0.38 2.07 9.11 45.56 0.42 2.48 16 40 H 0.07 1.28 8.08 -51.93 -0.42 0.86 16 41 H 0.08 1.60 8.14 -51.93 -0.42 1.17 16 42 H 0.08 2.01 8.14 -51.93 -0.42 1.58 16 43 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 LS Contribution 353.79 15.07 5.33 5.33 Total: -1.00 -31.67 353.79 -9.29 -40.96 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: -6.49 Total: 13.29 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: -2.75 Total: -3.25 kcal Atomic # 7 Polarization: -50.86 SS G_CDS: 0.02 Total: -50.85 kcal Atomic # 8 Polarization: -20.46 SS G_CDS: -0.38 Total: -20.84 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.67 -9.29 -40.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331504449.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.726 kcal (2) G-P(sol) polarization free energy of solvation -31.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds