Wall clock time and date at job start Tue Mar 31 2020 06:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 120.00056 * 2 1 4 4 H 1.48500 * 109.47177 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46918 * 299.99355 * 3 2 1 6 6 H 1.48494 * 109.47541 * 59.99349 * 3 2 1 7 7 C 1.37882 * 120.00130 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00080 * 172.91882 * 7 2 1 9 9 C 1.50697 * 119.99973 * 352.92365 * 7 2 1 10 10 C 1.53007 * 115.54976 * 84.52775 * 9 7 2 11 11 N 1.46504 * 109.46807 * 39.68375 * 10 9 7 12 12 C 1.34776 * 120.00052 * 181.04508 * 11 10 9 13 13 O 1.21587 * 119.99801 * 359.97438 * 12 11 10 14 14 N 1.34777 * 119.99998 * 179.72349 * 12 11 10 15 15 C 1.46500 * 119.99950 * 180.27477 * 14 12 11 16 16 C 1.53000 * 109.47348 * 179.97438 * 15 14 12 17 17 H 1.08995 * 110.43202 * 307.54460 * 16 15 14 18 18 C 1.54890 * 110.48435 * 70.22574 * 16 15 14 19 19 C 1.54887 * 102.74882 * 156.61924 * 18 16 15 20 20 C 1.54267 * 104.19608 * 322.06075 * 19 18 16 21 21 C 1.53872 * 106.59614 * 23.60706 * 20 19 18 22 22 H 1.08998 * 110.06984 * 240.68986 * 21 20 19 23 23 O 1.42902 * 110.02843 * 119.29166 * 21 20 19 24 24 C 1.52994 * 117.51877 * 230.23337 * 9 7 2 25 25 C 1.52998 * 60.00092 * 107.48155 * 24 9 7 26 26 H 0.96999 * 120.00223 * 5.03582 * 1 2 3 27 27 H 1.08990 * 109.47348 * 279.68368 * 10 9 7 28 28 H 1.08997 * 109.46875 * 159.67657 * 10 9 7 29 29 H 0.97002 * 120.00223 * 1.04865 * 11 10 9 30 30 H 0.97002 * 120.00218 * 0.28009 * 14 12 11 31 31 H 1.09003 * 109.47230 * 300.00265 * 15 14 12 32 32 H 1.09001 * 109.46795 * 60.00023 * 15 14 12 33 33 H 1.09003 * 110.75676 * 274.94064 * 18 16 15 34 34 H 1.09006 * 110.75434 * 38.30636 * 18 16 15 35 35 H 1.08996 * 110.48538 * 203.37857 * 19 18 16 36 36 H 1.09000 * 110.48174 * 80.73891 * 19 18 16 37 37 H 1.08998 * 110.03070 * 264.31837 * 20 19 18 38 38 H 1.08996 * 110.06913 * 142.91442 * 20 19 18 39 39 H 0.96692 * 114.00569 * 62.83000 * 23 21 20 40 40 H 1.09005 * 117.49820 * 214.97419 * 24 9 7 41 41 H 1.08997 * 117.49887 * 359.97438 * 24 9 7 42 42 H 1.08996 * 117.50066 * 252.51163 * 25 24 9 43 43 H 1.09004 * 117.51798 * 107.48077 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8903 2.3965 1.2123 7 6 2.0045 -1.1941 0.0005 8 1 3.0783 -1.1977 -0.1148 9 6 1.2597 -2.4941 0.1619 10 6 0.6733 -3.0826 -1.1230 11 7 1.6223 -2.8953 -2.2233 12 6 1.3084 -3.3192 -3.4636 13 8 0.2377 -3.8574 -3.6692 14 7 2.1791 -3.1418 -4.4769 15 6 1.8353 -3.5971 -5.8262 16 6 2.9869 -3.2771 -6.7814 17 1 3.2617 -2.2250 -6.7071 18 6 4.2077 -4.1818 -6.4809 19 6 4.9756 -4.1776 -7.8260 20 6 3.8646 -4.2055 -8.8960 21 6 2.6002 -3.6330 -8.2317 22 1 1.8058 -4.3794 -8.2339 23 8 2.1710 -2.4600 -8.9259 24 6 1.7703 -3.4749 1.2193 25 6 0.4721 -2.7010 1.4572 26 1 -0.4850 0.8368 -0.0737 27 1 -0.2625 -2.5768 -1.3603 28 1 0.4856 -4.1470 -0.9824 29 1 2.4767 -2.4663 -2.0592 30 1 3.0335 -2.7128 -4.3128 31 1 1.6617 -4.6732 -5.8134 32 1 0.9324 -3.0875 -6.1626 33 1 4.8188 -3.7544 -5.6858 34 1 3.8864 -5.1909 -6.2226 35 1 5.6064 -5.0626 -7.9079 36 1 5.5738 -3.2714 -7.9209 37 1 3.6845 -5.2304 -9.2205 38 1 4.1504 -3.5890 -9.7482 39 1 1.9139 -2.6184 -9.8444 40 1 1.6887 -4.5394 0.9996 41 1 2.6455 -3.1801 1.7982 42 1 0.4930 -1.8970 2.1928 43 1 -0.4639 -3.2561 1.3939 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331504449.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:48 Heat of formation + Delta-G solvation = -98.768422 kcal Electronic energy + Delta-G solvation = -22354.930663 eV Core-core repulsion = 19012.980533 eV Total energy + Delta-G solvation = -3341.950130 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.01461 -39.85310 -38.50861 -36.43475 -35.17095 -34.82761 -33.98512 -30.94173 -28.57032 -27.96261 -27.12378 -24.96368 -22.92357 -21.97086 -21.59415 -21.26493 -20.92338 -19.05725 -18.34657 -17.96310 -17.08690 -16.68648 -16.54890 -16.23092 -16.11781 -15.67494 -15.23472 -14.94512 -14.63631 -14.39379 -14.15312 -13.85277 -13.48441 -13.44078 -13.33022 -12.92395 -12.83273 -12.53610 -12.30366 -12.03599 -11.99916 -11.81256 -11.64020 -11.50862 -11.36179 -11.18940 -10.84096 -10.81143 -10.45974 -10.28830 -10.00077 -9.48517 -8.08481 -6.22059 1.42043 1.46514 1.55265 1.88249 2.29173 2.43316 3.18801 3.29094 3.42034 3.53399 3.56552 3.72308 3.99547 4.26221 4.28892 4.32861 4.41808 4.50913 4.55710 4.60915 4.70528 4.74979 4.76535 4.84244 4.92741 5.02597 5.04429 5.08384 5.17200 5.22581 5.28715 5.31692 5.43710 5.51123 5.57803 5.64470 5.77233 5.81672 6.20438 6.39584 6.86208 6.93151 7.29352 7.48061 7.73046 8.99190 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.019215 B = 0.003773 C = 0.003498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.839519 B = 7418.941876 C = 8001.764252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.029 3.971 3 Si 0.948 3.052 4 H -0.258 1.258 5 H -0.289 1.289 6 H -0.288 1.288 7 C -0.503 4.503 8 H 0.067 0.933 9 C 0.005 3.995 10 C 0.198 3.802 11 N -0.710 5.710 12 C 0.693 3.307 13 O -0.650 6.650 14 N -0.733 5.733 15 C 0.153 3.847 16 C -0.093 4.093 17 H 0.083 0.917 18 C -0.117 4.117 19 C -0.120 4.120 20 C -0.150 4.150 21 C 0.104 3.896 22 H 0.065 0.935 23 O -0.586 6.586 24 C -0.179 4.179 25 C -0.163 4.163 26 H 0.257 0.743 27 H 0.022 0.978 28 H 0.038 0.962 29 H 0.408 0.592 30 H 0.408 0.592 31 H 0.063 0.937 32 H 0.041 0.959 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.394 0.606 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.063 0.937 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.126 -8.102 -16.237 21.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.172 4.172 3 Si 0.775 3.225 4 H -0.181 1.181 5 H -0.216 1.216 6 H -0.214 1.214 7 C -0.540 4.540 8 H 0.085 0.915 9 C 0.004 3.996 10 C 0.073 3.927 11 N -0.364 5.364 12 C 0.393 3.607 13 O -0.534 6.534 14 N -0.390 5.390 15 C 0.028 3.972 16 C -0.112 4.112 17 H 0.101 0.899 18 C -0.155 4.155 19 C -0.157 4.157 20 C -0.188 4.188 21 C 0.044 3.956 22 H 0.083 0.917 23 O -0.394 6.394 24 C -0.216 4.216 25 C -0.201 4.201 26 H 0.066 0.934 27 H 0.040 0.960 28 H 0.056 0.944 29 H 0.244 0.756 30 H 0.244 0.756 31 H 0.081 0.919 32 H 0.059 0.941 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.099 0.901 36 H 0.086 0.914 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.244 0.756 40 H 0.107 0.893 41 H 0.105 0.895 42 H 0.082 0.918 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 10.138 -8.194 -15.777 20.465 hybrid contribution 0.232 1.302 -0.141 1.330 sum 10.370 -6.892 -15.918 20.209 Atomic orbital electron populations 1.70123 1.07442 1.27163 1.49510 1.25684 0.95300 1.01981 0.94217 0.85656 0.79716 0.80169 0.76966 1.18138 1.21570 1.21404 1.20607 0.93240 0.89253 1.50935 0.91454 1.19112 0.99380 0.94691 0.86402 1.20364 0.90362 0.96055 0.85964 1.44943 1.22177 1.62975 1.06273 1.16232 0.83653 0.79428 0.81397 1.90816 1.25800 1.52412 1.84340 1.44897 1.20680 1.65895 1.07513 1.21175 0.97214 0.98992 0.79778 1.22159 0.94758 1.01562 0.92727 0.89859 1.22583 0.94980 0.99450 0.98473 1.22298 0.97293 1.02667 0.93459 1.22846 0.94745 1.02183 0.98992 1.22448 0.95933 0.86633 0.90565 0.91715 1.86527 1.88051 1.34514 1.30336 1.23081 0.97190 0.96296 1.05022 1.22432 0.94008 1.01494 1.02137 0.93357 0.95981 0.94413 0.75575 0.75608 0.91910 0.94076 0.90366 0.90733 0.90107 0.91421 0.89908 0.90216 0.75595 0.89323 0.89539 0.91806 0.91203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.29 12.97 21.45 0.28 -51.02 16 2 C 0.03 1.54 5.39 84.66 0.46 2.00 16 3 Si 0.95 41.64 29.55 68.60 2.03 43.67 16 4 H -0.26 -10.59 7.11 99.48 0.71 -9.89 16 5 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 6 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 7 C -0.50 -25.11 7.43 25.60 0.19 -24.92 16 8 H 0.07 3.21 7.82 -2.91 -0.02 3.19 16 9 C 0.00 0.23 1.71 -52.93 -0.09 0.14 16 10 C 0.20 9.35 5.75 86.38 0.50 9.85 16 11 N -0.71 -29.66 5.34 -478.53 -2.55 -32.22 16 12 C 0.69 28.58 8.57 179.05 1.53 30.11 16 13 O -0.65 -32.21 16.34 -3.99 -0.07 -32.27 16 14 N -0.73 -22.43 5.45 -478.53 -2.61 -25.04 16 15 C 0.15 4.13 4.96 86.38 0.43 4.56 16 16 C -0.09 -1.85 2.62 -9.72 -0.03 -1.88 16 17 H 0.08 1.85 8.08 -2.39 -0.02 1.83 16 18 C -0.12 -1.81 6.19 31.88 0.20 -1.62 16 19 C -0.12 -1.48 6.83 31.67 0.22 -1.27 16 20 C -0.15 -1.79 6.61 31.32 0.21 -1.58 16 21 C 0.10 1.74 3.83 31.31 0.12 1.86 16 22 H 0.06 1.05 7.84 -2.39 -0.02 1.03 16 23 O -0.59 -10.98 13.22 -148.98 -1.97 -12.95 16 24 C -0.18 -7.19 9.88 30.59 0.30 -6.89 16 25 C -0.16 -7.46 9.51 30.59 0.29 -7.17 16 26 H 0.26 14.14 8.32 -92.71 -0.77 13.37 16 27 H 0.02 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.04 1.72 7.94 -2.39 -0.02 1.70 16 29 H 0.41 15.61 7.47 -92.71 -0.69 14.92 16 30 H 0.41 10.15 8.45 -92.71 -0.78 9.36 16 31 H 0.06 1.70 8.02 -2.39 -0.02 1.68 16 32 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.07 1.16 7.97 -2.38 -0.02 1.14 16 35 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.08 0.86 7.95 -2.39 -0.02 0.84 16 39 H 0.39 3.77 9.11 -74.06 -0.67 3.09 16 40 H 0.09 3.18 8.08 -2.38 -0.02 3.16 16 41 H 0.09 3.33 8.14 -2.39 -0.02 3.31 16 42 H 0.06 3.14 8.14 -2.39 -0.02 3.12 16 43 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 Total: -1.00 -68.18 353.79 -1.70 -69.88 By element: Atomic # 1 Polarization: 37.88 SS G_CDS: -1.13 Total: 36.75 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: 4.32 Total: 3.19 kcal Atomic # 7 Polarization: -103.38 SS G_CDS: -4.88 Total: -108.27 kcal Atomic # 8 Polarization: -43.19 SS G_CDS: -2.03 Total: -45.23 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.67 kcal Total: -68.18 -1.70 -69.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331504449.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.885 kcal (2) G-P(sol) polarization free energy of solvation -68.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds