Wall clock time and date at job start Tue Mar 31 2020 06:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99627 * 2 1 4 4 H 1.48494 * 109.47371 * 240.00066 * 3 2 1 5 5 H 1.48493 * 109.47355 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46802 * 120.00339 * 3 2 1 7 7 C 1.37869 * 120.00224 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00267 * 173.55434 * 7 2 1 9 9 C 1.50699 * 120.00082 * 353.55621 * 7 2 1 10 10 C 1.52998 * 115.55410 * 85.40603 * 9 7 2 11 11 N 1.46497 * 109.47109 * 65.14174 * 10 9 7 12 12 C 1.34783 * 119.99857 * 178.29336 * 11 10 9 13 13 O 1.21584 * 120.00082 * 359.97438 * 12 11 10 14 14 N 1.34770 * 119.99675 * 180.02562 * 12 11 10 15 15 C 1.46505 * 119.99993 * 179.72074 * 14 12 11 16 16 C 1.52999 * 109.47268 * 179.97438 * 15 14 12 17 17 H 1.09000 * 110.01777 * 53.61323 * 16 15 14 18 18 C 1.54265 * 110.03319 * 292.16807 * 16 15 14 19 19 C 1.54895 * 104.19552 * 217.10675 * 18 16 15 20 20 C 1.54894 * 102.74700 * 37.93991 * 19 18 16 21 21 C 1.53871 * 110.02893 * 174.99978 * 16 15 14 22 22 H 1.09000 * 110.03484 * 238.56544 * 21 16 15 23 23 O 1.42895 * 110.03715 * 359.95239 * 21 16 15 24 24 C 1.53004 * 117.50148 * 231.07822 * 9 7 2 25 25 C 1.53009 * 117.49737 * 299.73427 * 9 7 2 26 26 H 0.96995 * 120.00276 * 5.05939 * 1 2 3 27 27 H 1.09007 * 109.47010 * 305.14370 * 10 9 7 28 28 H 1.09000 * 109.47234 * 185.14824 * 10 9 7 29 29 H 0.96997 * 120.00190 * 358.28553 * 11 10 9 30 30 H 0.97001 * 120.00430 * 359.97438 * 14 12 11 31 31 H 1.08995 * 109.47041 * 300.00134 * 15 14 12 32 32 H 1.09000 * 109.46664 * 59.99949 * 15 14 12 33 33 H 1.09005 * 110.48730 * 335.78483 * 18 16 15 34 34 H 1.09003 * 110.48600 * 98.42837 * 18 16 15 35 35 H 1.08998 * 110.75107 * 279.62698 * 19 18 16 36 36 H 1.08994 * 110.91357 * 156.33052 * 19 18 16 37 37 H 1.08991 * 110.48316 * 203.37891 * 20 19 18 38 38 H 1.08999 * 110.59347 * 80.79129 * 20 19 18 39 39 H 0.96700 * 114.00354 * 179.97438 * 23 21 16 40 40 H 1.08996 * 117.50308 * 215.00321 * 24 9 7 41 41 H 1.09006 * 117.49492 * 0.02562 * 24 9 7 42 42 H 1.08998 * 117.49739 * 359.97438 * 25 9 7 43 43 H 1.08993 * 117.49728 * 144.97279 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6966 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0794 -1.1969 -0.1055 9 6 1.2583 -2.4950 0.1454 10 6 0.7023 -3.0860 -1.1518 11 7 1.8113 -3.4583 -2.0335 12 6 1.5601 -4.0344 -3.2258 13 8 0.4131 -4.2456 -3.5694 14 7 2.5804 -4.3773 -4.0368 15 6 2.3077 -5.0092 -5.3301 16 6 3.6288 -5.2932 -6.0477 17 1 4.2900 -5.8674 -5.3987 18 6 4.3054 -3.9676 -6.4535 19 6 4.9454 -4.2738 -7.8304 20 6 3.8904 -5.1876 -8.5021 21 6 3.3649 -6.0688 -7.3502 22 1 3.8988 -7.0190 -7.3337 23 8 1.9633 -6.2980 -7.5081 24 6 1.7471 -3.4738 1.2149 25 6 0.4418 -2.7017 1.4228 26 1 -0.4850 0.8367 -0.0741 27 1 0.0755 -2.3456 -1.6490 28 1 0.1076 -3.9703 -0.9226 29 1 2.7264 -3.2900 -1.7594 30 1 3.4956 -4.2092 -3.7626 31 1 1.7715 -5.9448 -5.1715 32 1 1.6998 -4.3408 -5.9399 33 1 3.5643 -3.1735 -6.5454 34 1 5.0721 -3.6932 -5.7290 35 1 5.8914 -4.8012 -7.7079 36 1 5.0866 -3.3589 -8.4059 37 1 4.3543 -5.8033 -9.2725 38 1 3.0819 -4.5922 -8.9263 39 1 1.7322 -6.7831 -8.3121 40 1 1.6727 -4.5387 0.9945 41 1 2.6083 -3.1765 1.8134 42 1 0.4449 -1.8969 2.1578 43 1 -0.4916 -3.2583 1.3389 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331504452.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:52 Heat of formation + Delta-G solvation = -73.096171 kcal Electronic energy + Delta-G solvation = -22377.540658 eV Core-core repulsion = 19036.703760 eV Total energy + Delta-G solvation = -3340.836897 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.71866 -38.80829 -36.70272 -35.40426 -33.99729 -33.11239 -31.92939 -29.83836 -27.86103 -26.27111 -25.23118 -23.81877 -21.27167 -21.13333 -20.22203 -19.80665 -19.31019 -17.83037 -17.47015 -16.14897 -15.90982 -15.26102 -14.96680 -14.79376 -14.62445 -14.23833 -13.95533 -13.72738 -13.54464 -13.18016 -12.58575 -12.54764 -12.41865 -11.70178 -11.58483 -11.50608 -11.33486 -10.96946 -10.95214 -10.87882 -10.87237 -10.81381 -10.51932 -10.22681 -10.09640 -9.64257 -9.42867 -8.92390 -8.66544 -8.45431 -8.19499 -7.86300 -6.03577 -4.12213 3.28925 3.34366 3.35134 3.36159 3.94296 3.96144 4.27302 4.34237 4.38327 4.65034 4.94109 5.01281 5.04468 5.17019 5.24406 5.29332 5.34575 5.40675 5.48787 5.57456 5.75325 5.78516 5.89246 6.05393 6.08755 6.16904 6.30108 6.39867 6.53167 6.66737 6.74342 6.92765 6.94522 7.13670 7.42380 7.46576 7.49481 7.53917 7.70997 7.85034 8.38726 8.78772 8.88407 9.34579 9.54135 11.04293 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.020618 B = 0.003687 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.712924 B = 7592.224493 C = 8354.678018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.074 3.926 3 Si 0.890 3.110 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.500 4.500 8 H 0.059 0.941 9 C 0.029 3.971 10 C 0.183 3.817 11 N -0.722 5.722 12 C 0.697 3.303 13 O -0.603 6.603 14 N -0.757 5.757 15 C 0.163 3.837 16 C -0.099 4.099 17 H 0.084 0.916 18 C -0.122 4.122 19 C -0.123 4.123 20 C -0.159 4.159 21 C 0.108 3.892 22 H 0.059 0.941 23 O -0.557 6.557 24 C -0.211 4.211 25 C -0.148 4.148 26 H 0.262 0.738 27 H 0.069 0.931 28 H 0.033 0.967 29 H 0.394 0.606 30 H 0.390 0.610 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.078 0.922 39 H 0.375 0.625 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.402 -10.804 -14.280 20.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.130 4.130 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.538 4.538 8 H 0.077 0.923 9 C 0.028 3.972 10 C 0.059 3.941 11 N -0.375 5.375 12 C 0.397 3.603 13 O -0.482 6.482 14 N -0.413 5.413 15 C 0.038 3.962 16 C -0.118 4.118 17 H 0.102 0.898 18 C -0.160 4.160 19 C -0.161 4.161 20 C -0.196 4.196 21 C 0.048 3.952 22 H 0.077 0.923 23 O -0.362 6.362 24 C -0.248 4.248 25 C -0.186 4.186 26 H 0.072 0.928 27 H 0.087 0.913 28 H 0.052 0.948 29 H 0.228 0.772 30 H 0.223 0.777 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.096 0.904 39 H 0.222 0.778 40 H 0.083 0.917 41 H 0.095 0.905 42 H 0.101 0.899 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.094 -10.530 -13.940 19.696 hybrid contribution 1.362 0.826 -0.318 1.625 sum 10.457 -9.704 -14.258 20.169 Atomic orbital electron populations 1.69965 1.05873 1.26994 1.48155 1.24979 0.94791 0.98884 0.94350 0.86697 0.79649 0.83291 0.78546 1.20323 1.21294 1.20240 1.20289 0.92738 0.88663 1.52100 0.92331 1.19036 0.98524 0.93828 0.85785 1.20822 0.86701 0.96594 0.90004 1.45135 1.11146 1.63933 1.17252 1.16045 0.84648 0.78886 0.80755 1.90871 1.19928 1.61818 1.75633 1.45177 1.08193 1.67911 1.20064 1.20804 0.94942 0.98068 0.82358 1.22082 0.97473 0.96742 0.95479 0.89779 1.22505 0.99889 0.96918 0.96652 1.22406 0.97821 0.99501 0.96326 1.23138 0.99633 0.98905 0.97967 1.22396 0.82037 0.96709 0.94027 0.92277 1.86650 1.22938 1.79428 1.47206 1.23016 0.98610 0.95703 1.07495 1.22488 0.92294 1.01069 1.02767 0.92801 0.91302 0.94822 0.77237 0.77709 0.91475 0.91585 0.90657 0.91102 0.91408 0.91253 0.91532 0.90371 0.77786 0.91659 0.90453 0.89859 0.91652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.65 12.91 55.43 0.72 -23.93 16 2 C 0.07 1.99 5.39 -17.82 -0.10 1.90 16 3 Si 0.89 20.77 29.55 -169.99 -5.02 15.74 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.50 -13.04 8.63 -34.44 -0.30 -13.33 16 8 H 0.06 1.49 7.82 -52.49 -0.41 1.08 16 9 C 0.03 0.70 1.38 -155.65 -0.21 0.48 16 10 C 0.18 4.34 5.50 -4.04 -0.02 4.32 16 11 N -0.72 -14.81 5.48 -65.23 -0.36 -15.17 16 12 C 0.70 14.27 8.57 -86.92 -0.74 13.52 16 13 O -0.60 -14.93 16.34 5.29 0.09 -14.84 16 14 N -0.76 -11.60 5.41 -65.22 -0.35 -11.95 16 15 C 0.16 2.30 4.01 -4.04 -0.02 2.28 16 16 C -0.10 -0.97 2.96 -89.50 -0.26 -1.24 16 17 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 18 C -0.12 -1.11 6.09 -25.07 -0.15 -1.27 16 19 C -0.12 -0.91 6.91 -24.73 -0.17 -1.08 16 20 C -0.16 -1.14 6.56 -25.07 -0.16 -1.31 16 21 C 0.11 0.91 4.23 -25.61 -0.11 0.80 16 22 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 23 O -0.56 -5.45 11.42 -35.23 -0.40 -5.85 16 24 C -0.21 -4.47 9.96 -26.69 -0.27 -4.73 16 25 C -0.15 -3.45 9.42 -26.69 -0.25 -3.70 16 26 H 0.26 7.13 8.32 -40.82 -0.34 6.79 16 27 H 0.07 1.88 8.14 -51.93 -0.42 1.46 16 28 H 0.03 0.80 8.09 -51.93 -0.42 0.38 16 29 H 0.39 7.28 8.38 -40.82 -0.34 6.94 16 30 H 0.39 4.83 8.37 -40.82 -0.34 4.48 16 31 H 0.07 1.07 7.65 -51.93 -0.40 0.67 16 32 H 0.07 1.08 7.91 -51.93 -0.41 0.67 16 33 H 0.07 0.82 7.76 -51.93 -0.40 0.42 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.08 0.63 8.08 -51.93 -0.42 0.21 16 39 H 0.38 2.02 9.11 45.56 0.42 2.43 16 40 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 41 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 42 H 0.08 2.05 8.14 -51.93 -0.42 1.63 16 43 H 0.06 1.45 8.14 -51.93 -0.42 1.03 16 LS Contribution 353.07 15.07 5.32 5.32 Total: -1.00 -32.32 353.07 -9.30 -41.62 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: -6.52 Total: 12.41 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: -2.77 Total: -3.35 kcal Atomic # 7 Polarization: -51.05 SS G_CDS: 0.01 Total: -51.05 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: -0.32 Total: -20.69 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.32 -9.30 -41.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331504452.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.480 kcal (2) G-P(sol) polarization free energy of solvation -32.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds