Wall clock time and date at job start Tue Mar 31 2020 06:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99853 * 2 1 4 4 H 1.48503 * 109.47200 * 240.00011 * 3 2 1 5 5 H 1.48502 * 109.47083 * 120.00385 * 3 2 1 6 6 H 1.48498 * 109.47457 * 0.02562 * 3 2 1 7 7 C 1.37881 * 120.00391 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00404 * 185.99009 * 7 2 1 9 9 C 1.50701 * 119.99612 * 5.98659 * 7 2 1 10 10 C 1.52999 * 115.54978 * 275.20432 * 9 7 2 11 11 N 1.46504 * 109.46926 * 304.53658 * 10 9 7 12 12 C 1.34782 * 120.00162 * 174.90709 * 11 10 9 13 13 O 1.21589 * 119.99841 * 359.97438 * 12 11 10 14 14 N 1.34770 * 120.00015 * 180.02562 * 12 11 10 15 15 C 1.46507 * 119.99682 * 180.02562 * 14 12 11 16 16 C 1.53006 * 109.46859 * 179.97438 * 15 14 12 17 17 H 1.08999 * 110.01654 * 53.60692 * 16 15 14 18 18 C 1.54268 * 110.03123 * 292.16599 * 16 15 14 19 19 C 1.54892 * 104.19123 * 217.10239 * 18 16 15 20 20 C 1.54890 * 102.74994 * 37.94621 * 19 18 16 21 21 C 1.53869 * 110.03321 * 174.99873 * 16 15 14 22 22 H 1.09007 * 110.02921 * 359.95513 * 21 16 15 23 23 O 1.42895 * 110.03395 * 238.57487 * 21 16 15 24 24 C 1.52996 * 117.50045 * 129.53291 * 9 7 2 25 25 C 1.52996 * 117.50018 * 60.87115 * 9 7 2 26 26 H 0.97001 * 120.00086 * 185.35229 * 1 2 3 27 27 H 1.09004 * 109.47786 * 64.53607 * 10 9 7 28 28 H 1.09000 * 109.47271 * 184.53932 * 10 9 7 29 29 H 0.97000 * 119.99948 * 354.90979 * 11 10 9 30 30 H 0.97002 * 120.00258 * 359.97438 * 14 12 11 31 31 H 1.09000 * 109.47090 * 299.99638 * 15 14 12 32 32 H 1.08994 * 109.47346 * 60.00236 * 15 14 12 33 33 H 1.08996 * 110.49105 * 335.78541 * 18 16 15 34 34 H 1.09004 * 110.48378 * 98.42909 * 18 16 15 35 35 H 1.08993 * 110.75706 * 279.62533 * 19 18 16 36 36 H 1.09001 * 110.90739 * 156.32874 * 19 18 16 37 37 H 1.08997 * 110.48679 * 203.37260 * 20 19 18 38 38 H 1.09002 * 110.59483 * 80.78374 * 20 19 18 39 39 H 0.96702 * 114.00101 * 180.02562 * 23 21 16 40 40 H 1.08999 * 117.49637 * 359.97438 * 24 9 7 41 41 H 1.08998 * 117.49888 * 145.02085 * 24 9 7 42 42 H 1.09005 * 117.50223 * 214.97733 * 25 9 7 43 43 H 1.08998 * 117.50272 * 359.97438 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 3.1029 1.6964 1.2125 6 1 1.2841 2.7465 0.0006 7 6 2.0046 -1.1940 -0.0005 8 1 3.0801 -1.1966 0.0971 9 6 1.2573 -2.4955 -0.1372 10 6 0.6977 -3.0749 1.1636 11 7 1.7820 -3.2256 2.1372 12 6 1.5076 -3.6238 3.3953 13 8 0.3601 -3.8575 3.7223 14 7 2.5050 -3.7619 4.2910 15 6 2.2067 -4.1952 5.6584 16 6 3.5053 -4.2710 6.4641 17 1 4.0397 -3.3232 6.4004 18 6 4.3918 -5.4155 5.9310 19 6 5.0478 -6.0109 7.2016 20 6 3.9036 -5.9384 8.2431 21 6 3.1949 -4.6035 7.9340 22 1 2.1191 -4.7101 8.0736 23 8 3.6989 -3.5729 8.7859 24 6 1.7475 -3.4837 -1.1974 25 6 0.4435 -2.7121 -1.4146 26 1 -0.4850 -0.8364 0.0784 27 1 -0.0600 -2.4019 1.5649 28 1 0.2501 -4.0487 0.9647 29 1 2.6974 -3.0388 1.8764 30 1 3.4205 -3.5751 4.0303 31 1 1.5295 -3.4807 6.1264 32 1 1.7371 -5.1785 5.6336 33 1 3.7832 -6.1669 5.4280 34 1 5.1532 -5.0253 5.2557 35 1 5.8970 -5.4053 7.5178 36 1 5.3528 -7.0439 7.0342 37 1 4.3088 -5.9300 9.2549 38 1 3.2155 -6.7741 8.1156 39 1 3.5347 -3.7250 9.7267 40 1 2.6103 -3.1923 -1.7963 41 1 1.6711 -4.5466 -0.9683 42 1 -0.4904 -3.2677 -1.3284 43 1 0.4482 -1.9131 -2.1559 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331504456.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:55 Heat of formation + Delta-G solvation = -79.936147 kcal Electronic energy + Delta-G solvation = -22345.132955 eV Core-core repulsion = 19003.999454 eV Total energy + Delta-G solvation = -3341.133501 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.80232 -38.92754 -37.03822 -35.56113 -33.98995 -33.28741 -31.90805 -29.96709 -28.04650 -26.26922 -24.87858 -23.89230 -21.37905 -21.26318 -20.42303 -19.92139 -19.60134 -17.77285 -17.45221 -16.60174 -16.02781 -15.74844 -15.34347 -15.06992 -14.26363 -14.05570 -13.77602 -13.73546 -13.42852 -13.12125 -12.79824 -12.73622 -12.52300 -12.37648 -11.84493 -11.59935 -11.40884 -11.00948 -10.94939 -10.86890 -10.86126 -10.78455 -10.46793 -10.17377 -10.13394 -9.78314 -9.52849 -8.86594 -8.63763 -8.53410 -8.37715 -8.01582 -6.36441 -4.13825 3.15140 3.41847 3.42261 3.61507 3.78879 3.95508 4.23565 4.27692 4.48808 4.64275 4.83213 4.92763 5.01589 5.16243 5.19463 5.28226 5.31242 5.32953 5.40535 5.54927 5.67026 5.71413 5.79239 5.86631 5.92424 5.96653 6.14215 6.16157 6.26751 6.41216 6.55146 6.65932 6.77721 6.87089 7.19173 7.21893 7.30981 7.40056 7.53198 8.18363 8.34638 8.64692 8.83009 9.18954 9.62195 11.01422 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.020694 B = 0.003606 C = 0.003353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.741304 B = 7763.384750 C = 8348.448114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.030 3.970 3 Si 1.064 2.936 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.283 1.283 7 C -0.575 4.575 8 H 0.052 0.948 9 C 0.005 3.995 10 C 0.178 3.822 11 N -0.716 5.716 12 C 0.699 3.301 13 O -0.606 6.606 14 N -0.751 5.751 15 C 0.151 3.849 16 C -0.100 4.100 17 H 0.093 0.907 18 C -0.120 4.120 19 C -0.121 4.121 20 C -0.156 4.156 21 C 0.106 3.894 22 H 0.063 0.937 23 O -0.564 6.564 24 C -0.195 4.195 25 C -0.171 4.171 26 H 0.276 0.724 27 H 0.062 0.938 28 H 0.034 0.966 29 H 0.398 0.602 30 H 0.394 0.606 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.377 0.623 40 H 0.080 0.920 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.529 -11.277 14.116 20.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.176 4.176 3 Si 0.893 3.107 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.208 1.208 7 C -0.613 4.613 8 H 0.070 0.930 9 C 0.004 3.996 10 C 0.053 3.947 11 N -0.368 5.368 12 C 0.399 3.601 13 O -0.486 6.486 14 N -0.408 5.408 15 C 0.026 3.974 16 C -0.118 4.118 17 H 0.111 0.889 18 C -0.158 4.158 19 C -0.159 4.159 20 C -0.194 4.194 21 C 0.047 3.953 22 H 0.081 0.919 23 O -0.369 6.369 24 C -0.232 4.232 25 C -0.209 4.209 26 H 0.087 0.913 27 H 0.080 0.920 28 H 0.052 0.948 29 H 0.232 0.768 30 H 0.227 0.773 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.224 0.776 40 H 0.099 0.901 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 8.404 -9.580 13.745 18.744 hybrid contribution 0.848 -1.746 0.336 1.969 sum 9.252 -11.326 14.080 20.301 Atomic orbital electron populations 1.70715 1.06874 1.31546 1.44044 1.25742 0.96503 1.02235 0.93157 0.83615 0.74994 0.75688 0.76425 1.21496 1.21517 1.20796 1.21145 0.93727 0.89707 1.56690 0.92996 1.19330 0.99083 0.95429 0.85720 1.20850 0.88053 0.97470 0.88308 1.44972 1.11908 1.70812 1.09138 1.16007 0.84559 0.78584 0.80974 1.90865 1.19504 1.58864 1.79317 1.45010 1.09438 1.75155 1.11189 1.21136 0.95337 1.00067 0.80873 1.21987 0.96504 1.00855 0.92496 0.88898 1.22477 0.98625 0.97180 0.97503 1.22443 0.97684 1.00818 0.94913 1.23088 0.98508 0.97992 0.99803 1.22356 0.96675 0.86371 0.89905 0.91936 1.86556 1.82578 1.47283 1.20533 1.22917 0.98116 0.95519 1.06652 1.22726 0.93064 1.02173 1.02914 0.91303 0.91999 0.94754 0.76839 0.77251 0.91790 0.91845 0.90889 0.91091 0.91244 0.91506 0.91107 0.90741 0.77635 0.90109 0.91424 0.91343 0.89520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.23 13.46 55.43 0.75 -25.48 16 2 C 0.03 0.83 5.39 -17.82 -0.10 0.74 16 3 Si 1.06 24.45 29.91 -169.99 -5.08 19.37 16 4 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.58 -15.03 8.26 -34.44 -0.28 -15.31 16 8 H 0.05 1.34 7.82 -52.49 -0.41 0.93 16 9 C 0.01 0.12 1.03 -155.66 -0.16 -0.04 16 10 C 0.18 4.08 5.49 -4.04 -0.02 4.06 16 11 N -0.72 -14.52 5.36 -65.22 -0.35 -14.86 16 12 C 0.70 13.94 8.57 -86.92 -0.74 13.19 16 13 O -0.61 -14.41 16.34 5.29 0.09 -14.32 16 14 N -0.75 -11.19 5.41 -65.22 -0.35 -11.55 16 15 C 0.15 1.96 4.73 -4.03 -0.02 1.94 16 16 C -0.10 -1.01 2.77 -89.50 -0.25 -1.26 16 17 H 0.09 1.05 7.95 -51.93 -0.41 0.64 16 18 C -0.12 -1.05 6.08 -25.07 -0.15 -1.20 16 19 C -0.12 -0.92 6.91 -24.74 -0.17 -1.09 16 20 C -0.16 -1.12 6.56 -25.07 -0.16 -1.28 16 21 C 0.11 0.95 3.92 -25.62 -0.10 0.85 16 22 H 0.06 0.54 7.67 -51.92 -0.40 0.14 16 23 O -0.56 -5.30 13.21 -35.23 -0.47 -5.77 16 24 C -0.19 -4.05 9.93 -26.70 -0.27 -4.32 16 25 C -0.17 -3.85 8.90 -26.70 -0.24 -4.09 16 26 H 0.28 8.05 6.13 -40.82 -0.25 7.80 16 27 H 0.06 1.62 7.51 -51.93 -0.39 1.23 16 28 H 0.03 0.76 8.10 -51.93 -0.42 0.34 16 29 H 0.40 7.42 8.17 -40.82 -0.33 7.08 16 30 H 0.39 4.89 8.37 -40.82 -0.34 4.55 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.06 0.83 8.00 -51.93 -0.42 0.42 16 33 H 0.07 0.67 7.76 -51.93 -0.40 0.26 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.43 8.06 -51.93 -0.42 0.01 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.38 1.89 9.10 45.56 0.41 2.31 16 40 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 41 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 42 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 43 H 0.09 2.09 8.14 -51.93 -0.42 1.67 16 LS Contribution 351.47 15.07 5.30 5.30 Total: -1.00 -32.71 351.47 -9.17 -41.88 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: -6.38 Total: 13.26 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: -2.67 Total: -7.82 kcal Atomic # 7 Polarization: -51.94 SS G_CDS: 0.04 Total: -51.89 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: -0.38 Total: -20.09 kcal Atomic # 14 Polarization: 24.45 SS G_CDS: -5.08 Total: 19.37 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.71 -9.17 -41.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331504456.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.056 kcal (2) G-P(sol) polarization free energy of solvation -32.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds