Wall clock time and date at job start Tue Mar 31 2020 06:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00524 * 2 1 4 4 H 1.48501 * 109.47374 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46910 * 300.00325 * 3 2 1 6 6 H 1.48507 * 109.46773 * 59.99899 * 3 2 1 7 7 C 1.37882 * 119.99500 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99620 * 173.59586 * 7 2 1 9 9 C 1.50697 * 120.00185 * 353.60158 * 7 2 1 10 10 C 1.52995 * 115.55267 * 85.43371 * 9 7 2 11 11 N 1.46510 * 109.47072 * 65.14001 * 10 9 7 12 12 C 1.34775 * 119.99535 * 178.57912 * 11 10 9 13 13 O 1.21579 * 120.00637 * 359.73175 * 12 11 10 14 14 N 1.34780 * 119.99498 * 179.72538 * 12 11 10 15 15 C 1.46497 * 119.99770 * 180.02562 * 14 12 11 16 16 C 1.53008 * 109.47093 * 180.02562 * 15 14 12 17 17 H 1.08998 * 110.43225 * 56.08777 * 16 15 14 18 18 C 1.54886 * 110.48451 * 293.54912 * 16 15 14 19 19 C 1.54890 * 102.74784 * 203.37828 * 18 16 15 20 20 C 1.54263 * 104.19559 * 37.94099 * 19 18 16 21 21 H 1.09006 * 110.03290 * 95.72551 * 20 19 18 22 22 O 1.42901 * 110.03281 * 217.10580 * 20 19 18 23 23 C 1.53869 * 106.59881 * 336.39035 * 20 19 18 24 24 C 1.53004 * 117.49747 * 231.10222 * 9 7 2 25 25 C 1.52998 * 117.49720 * 299.75929 * 9 7 2 26 26 H 0.97000 * 119.99451 * 5.06135 * 1 2 3 27 27 H 1.08997 * 109.47242 * 305.14719 * 10 9 7 28 28 H 1.08996 * 109.47273 * 185.14160 * 10 9 7 29 29 H 0.96994 * 120.00033 * 358.31131 * 11 10 9 30 30 H 0.97004 * 120.00026 * 0.02562 * 14 12 11 31 31 H 1.08995 * 109.47306 * 299.99808 * 15 14 12 32 32 H 1.08996 * 109.47114 * 60.00324 * 15 14 12 33 33 H 1.09001 * 110.75687 * 321.69380 * 18 16 15 34 34 H 1.09002 * 110.76162 * 85.06261 * 18 16 15 35 35 H 1.08999 * 110.48876 * 156.62147 * 19 18 16 36 36 H 1.09002 * 110.48403 * 279.12806 * 19 18 16 37 37 H 0.96704 * 113.99638 * 298.54567 * 22 20 19 38 38 H 1.09000 * 110.03550 * 240.71654 * 23 20 19 39 39 H 1.09007 * 110.03288 * 119.28084 * 23 20 19 40 40 H 1.08990 * 117.49987 * 215.00404 * 24 9 7 41 41 H 1.09007 * 117.49640 * 0.02851 * 24 9 7 42 42 H 1.09004 * 117.49968 * 359.97438 * 25 9 7 43 43 H 1.09004 * 117.49625 * 144.99995 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8905 2.3963 1.2126 7 6 2.0044 -1.1941 0.0005 8 1 3.0794 -1.1971 -0.1038 9 6 1.2579 -2.4951 0.1466 10 6 0.7033 -3.0869 -1.1507 11 7 1.8134 -3.4599 -2.0311 12 6 1.5633 -4.0315 -3.2257 13 8 0.4166 -4.2422 -3.5707 14 7 2.5843 -4.3696 -4.0379 15 6 2.3124 -4.9905 -5.3367 16 6 3.6342 -5.2720 -6.0541 17 1 4.2812 -5.8898 -5.4312 18 6 4.3434 -3.9457 -6.4239 19 6 5.2565 -4.3637 -7.6032 20 6 4.4076 -5.3773 -8.3980 21 1 3.8988 -4.8745 -9.2206 22 8 5.2402 -6.4228 -8.9040 23 6 3.3762 -5.9549 -7.4131 24 6 1.7456 -3.4731 1.2174 25 6 0.4401 -2.7008 1.4232 26 1 -0.4849 0.8368 -0.0741 27 1 0.0773 -2.3469 -1.6492 28 1 0.1085 -3.9710 -0.9216 29 1 2.7282 -3.2918 -1.7559 30 1 3.4992 -4.2018 -3.7625 31 1 1.7745 -5.9265 -5.1864 32 1 1.7065 -4.3163 -5.9420 33 1 3.6191 -3.1963 -6.7430 34 1 4.9373 -3.5786 -5.5869 35 1 5.4988 -3.5002 -8.2228 36 1 6.1674 -4.8336 -7.2324 37 1 5.9254 -6.1190 -9.5149 38 1 3.5107 -7.0326 -7.3209 39 1 2.3661 -5.7322 -7.7570 40 1 1.6714 -4.5380 0.9976 41 1 2.6062 -3.1753 1.8165 42 1 0.4424 -1.8954 2.1577 43 1 -0.4930 -3.2578 1.3388 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331550521.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:50 Heat of formation + Delta-G solvation = -76.735112 kcal Electronic energy + Delta-G solvation = -22103.908528 eV Core-core repulsion = 18762.913834 eV Total energy + Delta-G solvation = -3340.994694 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.68276 -38.86224 -36.80205 -35.92758 -33.67154 -33.15830 -31.96059 -29.73088 -28.34380 -26.23174 -25.23042 -23.86826 -21.22325 -21.01686 -20.42109 -19.90171 -19.34569 -17.91514 -17.60647 -16.39038 -15.72973 -15.64147 -15.02846 -14.66602 -14.55600 -14.25212 -14.03581 -13.77529 -13.57910 -13.22561 -12.71757 -12.61530 -12.52997 -11.78847 -11.62951 -11.55493 -11.36104 -11.02361 -11.01019 -10.95780 -10.89718 -10.83367 -10.52173 -10.25728 -10.18323 -9.71311 -9.48941 -8.95337 -8.78679 -8.49216 -8.23594 -7.93339 -6.07175 -4.15635 3.23950 3.24733 3.33582 3.35398 3.85018 3.92305 4.27293 4.30767 4.35365 4.55359 4.86839 4.96388 5.10804 5.17993 5.20997 5.23703 5.33311 5.39332 5.44000 5.59997 5.67132 5.78228 5.81680 5.93434 5.99849 6.05475 6.17561 6.36332 6.49328 6.62387 6.71237 6.82638 6.88210 7.10501 7.33685 7.36680 7.43981 7.49322 7.63565 7.82095 8.35339 8.70549 8.85356 9.25238 9.50955 11.00734 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.021301 B = 0.003378 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.193941 B = 8286.781137 C = 9048.683649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.073 3.927 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.499 4.499 8 H 0.060 0.940 9 C 0.028 3.972 10 C 0.182 3.818 11 N -0.721 5.721 12 C 0.697 3.303 13 O -0.605 6.605 14 N -0.754 5.754 15 C 0.149 3.851 16 C -0.102 4.102 17 H 0.083 0.917 18 C -0.119 4.119 19 C -0.158 4.158 20 C 0.099 3.901 21 H 0.059 0.941 22 O -0.568 6.568 23 C -0.111 4.111 24 C -0.211 4.211 25 C -0.148 4.148 26 H 0.261 0.739 27 H 0.069 0.931 28 H 0.034 0.966 29 H 0.395 0.605 30 H 0.393 0.607 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.076 0.924 37 H 0.376 0.624 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.494 -8.879 -13.716 19.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.131 4.131 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.537 4.537 8 H 0.078 0.922 9 C 0.027 3.973 10 C 0.059 3.941 11 N -0.373 5.373 12 C 0.397 3.603 13 O -0.484 6.484 14 N -0.410 5.410 15 C 0.024 3.976 16 C -0.121 4.121 17 H 0.101 0.899 18 C -0.157 4.157 19 C -0.196 4.196 20 C 0.040 3.960 21 H 0.077 0.923 22 O -0.374 6.374 23 C -0.149 4.149 24 C -0.248 4.248 25 C -0.186 4.186 26 H 0.071 0.929 27 H 0.087 0.913 28 H 0.052 0.948 29 H 0.229 0.771 30 H 0.226 0.774 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.223 0.777 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.084 0.916 41 H 0.096 0.904 42 H 0.102 0.898 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.826 -9.298 -13.563 18.663 hybrid contribution 1.598 1.574 -0.088 2.245 sum 10.423 -7.724 -13.651 18.833 Atomic orbital electron populations 1.69988 1.05878 1.26782 1.48313 1.24990 0.94800 0.98933 0.94353 0.86582 0.80135 0.83906 0.77619 1.19762 1.21073 1.20962 1.20371 0.92804 0.88630 1.51891 0.92214 1.19045 0.98583 0.93883 0.85770 1.20836 0.86627 0.96615 0.90056 1.45143 1.11245 1.63879 1.17049 1.16048 0.84584 0.78873 0.80804 1.90866 1.19971 1.61868 1.75728 1.45068 1.08390 1.68254 1.19333 1.21112 0.95504 0.97807 0.83152 1.22224 0.96634 0.97055 0.96225 0.89869 1.22527 0.98413 0.96971 0.97747 1.23121 0.99341 0.99134 0.98024 1.22498 0.90909 0.87351 0.95221 0.92310 1.86555 1.48856 1.35856 1.66109 1.22085 0.98263 1.01360 0.93228 1.23019 0.98642 0.95699 1.07453 1.22491 0.92289 1.01065 1.02742 0.92907 0.91263 0.94768 0.77148 0.77402 0.91932 0.91802 0.90723 0.90985 0.91404 0.90575 0.77728 0.90147 0.90300 0.91644 0.90424 0.89833 0.91647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.33 12.91 55.43 0.72 -23.62 16 2 C 0.07 1.95 5.39 -17.82 -0.10 1.85 16 3 Si 0.89 20.52 29.55 -169.99 -5.02 15.49 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.50 -12.83 8.63 -34.44 -0.30 -13.13 16 8 H 0.06 1.51 7.82 -52.48 -0.41 1.10 16 9 C 0.03 0.66 1.38 -155.66 -0.21 0.44 16 10 C 0.18 4.22 5.50 -4.04 -0.02 4.20 16 11 N -0.72 -14.27 5.48 -65.23 -0.36 -14.62 16 12 C 0.70 13.55 8.57 -86.92 -0.74 12.81 16 13 O -0.60 -14.22 16.34 5.30 0.09 -14.14 16 14 N -0.75 -10.70 5.40 -65.23 -0.35 -11.05 16 15 C 0.15 1.83 4.96 -4.04 -0.02 1.81 16 16 C -0.10 -0.94 2.93 -88.96 -0.26 -1.20 16 17 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 18 C -0.12 -1.02 6.01 -24.74 -0.15 -1.17 16 19 C -0.16 -1.16 6.55 -25.07 -0.16 -1.32 16 20 C 0.10 0.78 4.26 -25.62 -0.11 0.67 16 21 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 22 O -0.57 -4.72 13.22 -35.23 -0.47 -5.19 16 23 C -0.11 -0.97 6.18 -25.62 -0.16 -1.13 16 24 C -0.21 -4.39 9.96 -26.69 -0.27 -4.66 16 25 C -0.15 -3.39 9.41 -26.70 -0.25 -3.64 16 26 H 0.26 6.98 8.32 -40.82 -0.34 6.64 16 27 H 0.07 1.85 8.14 -51.93 -0.42 1.43 16 28 H 0.03 0.79 8.09 -51.93 -0.42 0.37 16 29 H 0.40 7.06 8.38 -40.82 -0.34 6.71 16 30 H 0.39 4.54 8.34 -40.82 -0.34 4.20 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.06 0.85 8.10 -51.93 -0.42 0.43 16 33 H 0.07 0.69 8.02 -51.93 -0.42 0.28 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.08 0.56 8.08 -51.93 -0.42 0.14 16 37 H 0.38 1.55 9.10 45.56 0.41 1.97 16 38 H 0.08 0.75 7.95 -51.93 -0.41 0.34 16 39 H 0.08 0.66 7.84 -51.93 -0.41 0.25 16 40 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 41 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 42 H 0.08 2.03 8.14 -51.93 -0.42 1.61 16 43 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 LS Contribution 355.42 15.07 5.36 5.36 Total: -1.00 -31.64 355.42 -9.33 -40.97 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: -6.54 Total: 11.25 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: -2.75 Total: -4.46 kcal Atomic # 7 Polarization: -49.29 SS G_CDS: 0.01 Total: -49.29 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: -0.38 Total: -19.33 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.64 -9.33 -40.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331550521.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.764 kcal (2) G-P(sol) polarization free energy of solvation -31.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds