Wall clock time and date at job start Tue Mar 31 2020 06:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00524 * 2 1 4 4 H 1.48501 * 109.47374 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46910 * 300.00325 * 3 2 1 6 6 H 1.48507 * 109.46773 * 59.99899 * 3 2 1 7 7 C 1.37882 * 119.99500 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99620 * 173.59586 * 7 2 1 9 9 C 1.50697 * 120.00185 * 353.60158 * 7 2 1 10 10 C 1.52995 * 115.55267 * 85.43371 * 9 7 2 11 11 N 1.46510 * 109.47072 * 65.14001 * 10 9 7 12 12 C 1.34775 * 119.99535 * 178.57912 * 11 10 9 13 13 O 1.21579 * 120.00637 * 359.73175 * 12 11 10 14 14 N 1.34780 * 119.99498 * 179.72538 * 12 11 10 15 15 C 1.46497 * 119.99770 * 180.02562 * 14 12 11 16 16 C 1.53008 * 109.47093 * 180.02562 * 15 14 12 17 17 H 1.08998 * 110.43225 * 56.08777 * 16 15 14 18 18 C 1.54886 * 110.48451 * 293.54912 * 16 15 14 19 19 C 1.54890 * 102.74784 * 203.37828 * 18 16 15 20 20 C 1.54263 * 104.19559 * 37.94099 * 19 18 16 21 21 H 1.09006 * 110.03290 * 95.72551 * 20 19 18 22 22 O 1.42901 * 110.03281 * 217.10580 * 20 19 18 23 23 C 1.53869 * 106.59881 * 336.39035 * 20 19 18 24 24 C 1.53004 * 117.49747 * 231.10222 * 9 7 2 25 25 C 1.52998 * 117.49720 * 299.75929 * 9 7 2 26 26 H 0.97000 * 119.99451 * 5.06135 * 1 2 3 27 27 H 1.08997 * 109.47242 * 305.14719 * 10 9 7 28 28 H 1.08996 * 109.47273 * 185.14160 * 10 9 7 29 29 H 0.96994 * 120.00033 * 358.31131 * 11 10 9 30 30 H 0.97004 * 120.00026 * 0.02562 * 14 12 11 31 31 H 1.08995 * 109.47306 * 299.99808 * 15 14 12 32 32 H 1.08996 * 109.47114 * 60.00324 * 15 14 12 33 33 H 1.09001 * 110.75687 * 321.69380 * 18 16 15 34 34 H 1.09002 * 110.76162 * 85.06261 * 18 16 15 35 35 H 1.08999 * 110.48876 * 156.62147 * 19 18 16 36 36 H 1.09002 * 110.48403 * 279.12806 * 19 18 16 37 37 H 0.96704 * 113.99638 * 298.54567 * 22 20 19 38 38 H 1.09000 * 110.03550 * 240.71654 * 23 20 19 39 39 H 1.09007 * 110.03288 * 119.28084 * 23 20 19 40 40 H 1.08990 * 117.49987 * 215.00404 * 24 9 7 41 41 H 1.09007 * 117.49640 * 0.02851 * 24 9 7 42 42 H 1.09004 * 117.49968 * 359.97438 * 25 9 7 43 43 H 1.09004 * 117.49625 * 144.99995 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8905 2.3963 1.2126 7 6 2.0044 -1.1941 0.0005 8 1 3.0794 -1.1971 -0.1038 9 6 1.2579 -2.4951 0.1466 10 6 0.7033 -3.0869 -1.1507 11 7 1.8134 -3.4599 -2.0311 12 6 1.5633 -4.0315 -3.2257 13 8 0.4166 -4.2422 -3.5707 14 7 2.5843 -4.3696 -4.0379 15 6 2.3124 -4.9905 -5.3367 16 6 3.6342 -5.2720 -6.0541 17 1 4.2812 -5.8898 -5.4312 18 6 4.3434 -3.9457 -6.4239 19 6 5.2565 -4.3637 -7.6032 20 6 4.4076 -5.3773 -8.3980 21 1 3.8988 -4.8745 -9.2206 22 8 5.2402 -6.4228 -8.9040 23 6 3.3762 -5.9549 -7.4131 24 6 1.7456 -3.4731 1.2174 25 6 0.4401 -2.7008 1.4232 26 1 -0.4849 0.8368 -0.0741 27 1 0.0773 -2.3469 -1.6492 28 1 0.1085 -3.9710 -0.9216 29 1 2.7282 -3.2918 -1.7559 30 1 3.4992 -4.2018 -3.7625 31 1 1.7745 -5.9265 -5.1864 32 1 1.7065 -4.3163 -5.9420 33 1 3.6191 -3.1963 -6.7430 34 1 4.9373 -3.5786 -5.5869 35 1 5.4988 -3.5002 -8.2228 36 1 6.1674 -4.8336 -7.2324 37 1 5.9254 -6.1190 -9.5149 38 1 3.5107 -7.0326 -7.3209 39 1 2.3661 -5.7322 -7.7570 40 1 1.6714 -4.5380 0.9976 41 1 2.6062 -3.1753 1.8165 42 1 0.4424 -1.8954 2.1577 43 1 -0.4930 -3.2578 1.3388 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331550521.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:49 Heat of formation + Delta-G solvation = -99.875667 kcal Electronic energy + Delta-G solvation = -22104.911978 eV Core-core repulsion = 18762.913834 eV Total energy + Delta-G solvation = -3341.998144 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.01772 -39.79264 -38.53116 -36.81270 -35.00486 -34.66663 -33.94156 -30.60166 -29.14700 -27.93937 -26.99561 -24.96952 -22.95832 -21.95854 -21.51294 -21.21798 -20.85366 -19.12805 -18.53003 -18.06677 -17.15071 -16.77400 -16.51452 -16.21525 -15.73426 -15.68551 -15.07019 -14.96346 -14.69219 -14.55157 -14.38767 -13.79579 -13.48218 -13.38521 -13.26248 -12.91710 -12.82663 -12.36698 -12.31285 -12.09179 -12.02739 -11.77768 -11.61555 -11.56469 -11.49479 -11.25177 -10.83902 -10.76251 -10.45397 -10.26012 -10.02573 -9.55369 -8.08167 -6.21290 1.42093 1.45725 1.55023 1.85939 2.27464 2.43747 3.20047 3.27292 3.43234 3.56952 3.63005 3.72685 3.82284 4.26946 4.27846 4.42692 4.45205 4.52737 4.58199 4.59909 4.67667 4.75690 4.77680 4.82536 4.90615 5.00496 5.01363 5.05520 5.09835 5.26021 5.28995 5.31940 5.41330 5.58313 5.60973 5.63711 5.73873 5.80714 6.18484 6.38741 6.86014 6.94537 7.27041 7.48086 7.71431 8.99635 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.021301 B = 0.003378 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.193941 B = 8286.781137 C = 9048.683649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.023 3.977 3 Si 0.951 3.049 4 H -0.260 1.260 5 H -0.288 1.288 6 H -0.286 1.286 7 C -0.503 4.503 8 H 0.065 0.935 9 C 0.006 3.994 10 C 0.200 3.800 11 N -0.715 5.715 12 C 0.694 3.306 13 O -0.649 6.649 14 N -0.731 5.731 15 C 0.149 3.851 16 C -0.090 4.090 17 H 0.091 0.909 18 C -0.121 4.121 19 C -0.150 4.150 20 C 0.099 3.901 21 H 0.068 0.932 22 O -0.585 6.585 23 C -0.114 4.114 24 C -0.176 4.176 25 C -0.160 4.160 26 H 0.258 0.742 27 H 0.025 0.975 28 H 0.031 0.969 29 H 0.407 0.593 30 H 0.409 0.591 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.393 0.607 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.064 0.936 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.016 -9.302 -14.306 21.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.177 4.177 3 Si 0.777 3.223 4 H -0.184 1.184 5 H -0.215 1.215 6 H -0.212 1.212 7 C -0.540 4.540 8 H 0.083 0.917 9 C 0.005 3.995 10 C 0.075 3.925 11 N -0.369 5.369 12 C 0.394 3.606 13 O -0.532 6.532 14 N -0.388 5.388 15 C 0.025 3.975 16 C -0.109 4.109 17 H 0.109 0.891 18 C -0.158 4.158 19 C -0.188 4.188 20 C 0.041 3.959 21 H 0.085 0.915 22 O -0.393 6.393 23 C -0.152 4.152 24 C -0.213 4.213 25 C -0.198 4.198 26 H 0.067 0.933 27 H 0.043 0.957 28 H 0.049 0.951 29 H 0.242 0.758 30 H 0.245 0.755 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.243 0.757 38 H 0.092 0.908 39 H 0.097 0.903 40 H 0.106 0.894 41 H 0.106 0.894 42 H 0.083 0.917 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 11.439 -9.733 -14.174 20.652 hybrid contribution 0.820 1.647 0.052 1.840 sum 12.259 -8.086 -14.122 20.374 Atomic orbital electron populations 1.70118 1.07329 1.27224 1.49930 1.25724 0.95451 1.02136 0.94431 0.85621 0.79545 0.80069 0.77058 1.18389 1.21461 1.21197 1.20692 0.93144 0.89506 1.50685 0.91699 1.19056 0.99691 0.94497 0.86209 1.20384 0.87038 0.95087 0.90035 1.44906 1.10953 1.63967 1.17030 1.16232 0.84848 0.78625 0.80930 1.90837 1.22180 1.63566 1.76579 1.44904 1.08082 1.66797 1.19035 1.21238 0.97337 0.96858 0.82117 1.22119 0.94801 0.97789 0.96197 0.89107 1.22539 0.98497 0.96208 0.98595 1.23060 0.98892 0.99372 0.97436 1.22478 0.90835 0.87288 0.95329 0.91453 1.86510 1.49606 1.36437 1.66795 1.22097 0.98880 1.00970 0.93249 1.23004 0.97354 0.96239 1.04667 1.22437 0.93782 1.01421 1.02168 0.93278 0.95693 0.95084 0.75799 0.75453 0.92753 0.92898 0.91556 0.90456 0.90158 0.90303 0.75693 0.90754 0.90293 0.89395 0.89447 0.91745 0.91205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.58 12.91 21.45 0.28 -51.30 16 2 C 0.02 1.22 5.39 84.66 0.46 1.68 16 3 Si 0.95 41.97 29.55 68.60 2.03 44.00 16 4 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 5 H -0.29 -12.80 7.11 99.48 0.71 -12.10 16 6 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 7 C -0.50 -25.47 8.63 25.60 0.22 -25.25 16 8 H 0.06 3.15 7.82 -2.91 -0.02 3.13 16 9 C 0.01 0.29 1.38 -52.93 -0.07 0.22 16 10 C 0.20 9.35 5.50 86.38 0.48 9.82 16 11 N -0.72 -27.89 5.48 -478.54 -2.62 -30.51 16 12 C 0.69 26.76 8.57 179.05 1.53 28.30 16 13 O -0.65 -31.01 16.34 -3.96 -0.06 -31.08 16 14 N -0.73 -19.87 5.40 -478.54 -2.58 -22.46 16 15 C 0.15 3.54 4.96 86.38 0.43 3.97 16 16 C -0.09 -1.50 2.93 -9.72 -0.03 -1.53 16 17 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 18 C -0.12 -1.81 6.01 31.88 0.19 -1.62 16 19 C -0.15 -1.80 6.55 31.67 0.21 -1.60 16 20 C 0.10 1.36 4.26 31.32 0.13 1.49 16 21 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 22 O -0.58 -8.47 13.22 -148.98 -1.97 -10.44 16 23 C -0.11 -1.83 6.18 31.32 0.19 -1.64 16 24 C -0.18 -6.94 9.96 30.62 0.30 -6.64 16 25 C -0.16 -7.30 9.41 30.62 0.29 -7.01 16 26 H 0.26 14.14 8.32 -92.71 -0.77 13.37 16 27 H 0.02 1.37 8.14 -2.39 -0.02 1.36 16 28 H 0.03 1.45 8.09 -2.39 -0.02 1.43 16 29 H 0.41 13.86 8.38 -92.71 -0.78 13.08 16 30 H 0.41 8.56 8.34 -92.71 -0.77 7.78 16 31 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.05 1.40 8.10 -2.39 -0.02 1.38 16 33 H 0.07 1.12 8.02 -2.39 -0.02 1.11 16 34 H 0.08 1.08 8.14 -2.39 -0.02 1.07 16 35 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.08 0.94 8.08 -2.39 -0.02 0.92 16 37 H 0.39 2.34 9.10 -74.05 -0.67 1.66 16 38 H 0.07 1.30 7.95 -2.39 -0.02 1.28 16 39 H 0.08 1.25 7.84 -2.38 -0.02 1.23 16 40 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 41 H 0.09 3.30 8.14 -2.38 -0.02 3.28 16 42 H 0.06 3.16 8.14 -2.38 -0.02 3.14 16 43 H 0.07 3.07 8.14 -2.38 -0.02 3.05 16 Total: -1.00 -68.21 355.42 -1.81 -70.02 By element: Atomic # 1 Polarization: 32.79 SS G_CDS: -1.21 Total: 31.58 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: 4.33 Total: 0.19 kcal Atomic # 7 Polarization: -99.34 SS G_CDS: -4.93 Total: -104.27 kcal Atomic # 8 Polarization: -39.49 SS G_CDS: -2.03 Total: -41.52 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 44.00 kcal Total: -68.21 -1.81 -70.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331550521.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.851 kcal (2) G-P(sol) polarization free energy of solvation -68.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds